Ss1.1-Spl1-SPL010001H07.5.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
GTGGCGGGAGCGCGCGTGCGCGCGCCCAGGCAGCCCGGGCACCGGGTCCTGCCTTTGACG GGAGGAGGCGGCGGGTCCTCTCTGTGACGGCGGCGGTGCCTGCTCCAGACACCTGAGGCG GCGGCGGCAGCCCCGCGGCGGACGCGGAGATGTGGCCCTTGGTGGTGGTGGTGCTGCTGG GCTCGGCGTACTGCGGTTCAGCTCAGTTGATATTTAATATAACCAAATCTGTAGAATTCA CCGTTTGCAATACAACTGTTACCATCCCATGTTTTGTTAATAACATGGAGGCAAAGAACA TTTCTGAATTGTATGTCAAGTGGAAATTTAAAGGAAAAGACATTTTCATCTTTGATGGCG CTCAGCACATATCCAAGCCCAGTGAAGCCTTCCCTAGTTCAAAAATCTCACCATCAGAAT TACTACATGGCATTGCCTCTTTGAAGATGGATAAGCGTGATGCCGTCATAGGAAACTACA CTTGTGAAGTAACAGAATTAAGCAGAGAAGGCGAAACCATCATAGAACTAAAACGTCGTT TTGTTTCATGGTTTTCTCCAAATGAAAATATCCTCATTGTTATTTTCCCAATTTTGGCTA TACTTCTGTTCTGGGGACAGTTTGGTATTTTGACTCTTAAATATAAATCCAGTTATACGA AGGAGAAAACCATTTTTCTATTAGTTGCTGGACTAATGCTCACTATCATTGTCATTGTTG GAGCCATTCTTTTCATCCCAGGTGAATATTCAACAAAGAATGCTTGTGGACTTGGTTTAA TTGTAATCCCTACAGCAATATTAATATTACTTCAATACTGTGTGTTTATGATGGCTCTTG GAATGTCTTCCTTCACCATTGCCATATTGATCCTTCAGGTATTGGGCCATGTGCTCTCTG TGGTTGGACTTAGCCTCTGCGTCTCAGAGTGTACCCCAGTGCATGGCCCTCTTCTGATTT CAGGTTTGGGTATTATAGCTCTAGCAGAATTACTTGGACTAGTTTATATGAAATGTGTTG CTTCTGATCACAAGACTATACAACCTCCTAGGAATAACTGAAGTGAAGTGATGGACTCTG ATTTGGAGAGTACTAAGACGTGAAAGATACACACTTGTGTTTAAGCACCACGGCCTTGAT TCACTGTTTGGGAGAAGAAAATAAGAAGAGTAACTGGTTTCCATCTATGGGAGAAAGTAA ATCATTGACCTTTAAATTGTTACAGTTTAAGTTTTTATTCAAAGCATTTTTAATTTAGTT AATAAAATTACAATCTGTGTTGTG |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
GTGGCGGGAGCGCGCGTGCGCGCGCCCAGGCAGCCCGGGCACCGGGTCCTGCCTTTGACG GGAGGAGGCGGCGGGTCCTCTCTGTGACGGCGGCGGTGCCTGCTCCAGACACCTGAGGCG GCGGCGGCAGCCCCGCGGCGGACGCGGAGATGTGGCCCTTGGTGGTGGTGGTGCTGCTGG GCTCGGCGTACTGCGGTTCAGCTCAGTTGATATTTAATATAACCAAATCTGTAGAATTCA CCGTTTGCAATACAACTGTTACCATCCCATGTTTTGTTAATAACATGGAGGCAAAGAACA TTTCTGAATTGTATGTCAAGTGGAAATTTAAAGGAAAAGACATTTTCATCTTTGATGGCG CTCAGCACATATCCAAGCCCAGTGAAGCCTTCCCTAGTTCAAAAATCTCACCATCAGAAT TACTACATGGCATTGCCTCTTTGAAGATGGATAAGCGTGATGCCGTCATAGGAAACTACA CTTGTGAAGTAACAGAATTAAGCAGAGAAGGCGAAACCATCATAGAACTAAAACGTCGTT TTGTTTCATGGTTTTCTCCAAATGAAAATATCCTCATTGTTATTTTCCCAATTTTGGCTA TACTTCTGTTCTGGGGACAGTTTGGTATTTTGACTCTTAAATATAAATCCAGTTATACGA AGGAGAAAACCATTTTTCTATTAGTTGCTGGACTAATGCTCACTATCATTGTCATTGTTG GAGCCATTCTTTTCATCCCAGGTGAATATTCAACAAAGAATGCTTGTGGACTTGGTTTAA TTGTAATCCCTACAGCAATATTAATATTACTTCAATACTGTGTGTTTATGATGGCTCTTG GAATGTCTTCCTTCACCATTGCCATATTGATCCTTCAGGTATTGGGCCATGTGCTCTCTG TGGTTGGACTTAGCCTCTGCGTCTCAGAGTGTACCCCAGTGCATGGCCCTCTTCTGATTT CAGGTTTGGGTATTATAGCTCTAGCAGAATTACTTGGACTAGTTTATATGAAATGTGTTG CTTCTGATCACAAGACTATACAACCTCCTAGGAATAACTGAAGTGAAGTGATGGACTCTG ATTTGGAGAGTACTAAGACGTGAAAGATACACACTTGTGTTTAAGCACCACGGCCTTGAT TCACTGTTTGGGAGAAGAAAATAAGAAGAGTAACTGGTTTCCATCTATGGGAGAAAGTAA ATCATTGACCTTTAAATTGTTACAGTTTAAGTTTTTATTCAAAGCATTTTTAATTTAGTT AATAAAATTACAATCTGTGTTGTG |
Coded protein: 1 entry(ies) | More info |
Aligned organism(s): 28 entry(ies) | More info |
Aligned organism(s): 28 entry(ies) | Help | Less info |
195-543, gnl|bosTau2|chr1 (29018954-29019302) | |
195-543, gnl|canFam2|chr33 (16393724-16394011) | |
195-543, gnl|dasNov1|scaffold_63996 (6837-7121) | |
195-543, gnl|echTel1|scaffold_253228 (6972-7262) | |
195-543, gnl|hg17|chr3 (109281524-109281817) | |
195-543, gnl|Hg17|chr3 (109281882-109281528) | |
195-543, gnl|loxAfr1|scaffold_93499 (1351-1637) | |
195-543, gnl|mm7|chr16 (49628810-49628523) | |
195-543, gnl|Mm7|chr16 (49628456-49628804) | |
195-543, gnl|monDom2|scaffold_24 (437937-438224) | |
195-543, gnl|oryCun1|scaffold_202088 (146547-146262) | |
195-543, gnl|rheMac2|chr2 (28173337-28173630) | |
195-543, gnl|rn3|chr11 (52202988-52203275) | |
623-752, gnl|bosTau2|chr1 (29053484-29053615) | |
623-752, gnl|Hg17|chr3 (109262404-109262270) | |
623-752, gnl|Mm7|chr16 (49654855-49654988) | |
1052-1284, gnl|bosTau2|chr1 (29069352-29069590) | |
1052-1284, gnl|canFam2|chr33 (16361010-16362514) | |
1052-1284, gnl|dasNov1|scaffold_4658 (8370-6904) | |
1052-1284, gnl|echTel1|scaffold_307122 (71844-70420) | |
1052-1284, gnl|hg17|chr3 (109247418-109248887) | |
1052-1284, gnl|Hg17|chr3 (109248830-109248609) | |
1052-1284, gnl|mm7|chr16 (49672985-49671505) | |
1052-1284, gnl|Mm7|chr16 (49671560-49671770) | |
1052-1284, gnl|monDom2|scaffold_24 (364205-365764) | |
1052-1284, gnl|panTro1|chr2 (110753781-110755251) | |
1052-1284, gnl|rheMac2|chr2 (28138565-28140036) | |
1052-1284, gnl|rn3|chr11 (52155410-52156925) |
Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
195-543, gnl|bosTau2|chr1 (29018954-29019302) | |
195-543, gnl|canFam2|chr33 (16393724-16394011) | |
195-543, gnl|dasNov1|scaffold_63996 (6837-7121) | |
195-543, gnl|echTel1|scaffold_253228 (6972-7262) | |
195-543, gnl|hg17|chr3 (109281524-109281817) | |
195-543, gnl|Hg17|chr3 (109281882-109281528) | |
195-543, gnl|loxAfr1|scaffold_93499 (1351-1637) | |
195-543, gnl|mm7|chr16 (49628810-49628523) | |
195-543, gnl|Mm7|chr16 (49628456-49628804) | |
195-543, gnl|monDom2|scaffold_24 (437937-438224) | |
195-543, gnl|oryCun1|scaffold_202088 (146547-146262) | |
195-543, gnl|rheMac2|chr2 (28173337-28173630) | |
195-543, gnl|rn3|chr11 (52202988-52203275) | |
623-752, gnl|bosTau2|chr1 (29053484-29053615) | |
623-752, gnl|Hg17|chr3 (109262404-109262270) | |
623-752, gnl|Mm7|chr16 (49654855-49654988) | |
1052-1284, gnl|bosTau2|chr1 (29069352-29069590) | |
1052-1284, gnl|canFam2|chr33 (16361010-16362514) | |
1052-1284, gnl|dasNov1|scaffold_4658 (8370-6904) | |
1052-1284, gnl|echTel1|scaffold_307122 (71844-70420) | |
1052-1284, gnl|hg17|chr3 (109247418-109248887) | |
1052-1284, gnl|Hg17|chr3 (109248830-109248609) | |
1052-1284, gnl|mm7|chr16 (49672985-49671505) | |
1052-1284, gnl|Mm7|chr16 (49671560-49671770) | |
1052-1284, gnl|monDom2|scaffold_24 (364205-365764) | |
1052-1284, gnl|panTro1|chr2 (110753781-110755251) | |
1052-1284, gnl|rheMac2|chr2 (28138565-28140036) | |
1052-1284, gnl|rn3|chr11 (52155410-52156925) |
Expressed library(ies): 21 entry(ies) | More info |
Expressed library(ies): 21 entry(ies) | Help | Less info |
cbl (0.573987) | |
tes (0.415628) | |
spl (0.286369) | |
lnt (0.284616) | |
fce (0.271592) | |
sug (0.254582) | |
cbe (0.239234) | |
mgp (0.230681) | |
cty (0.20816) | |
fli (0.202881) | |
fcc (0.197785) | |
col (0.195008) | |
nlu (0.191681) | |
sin (0.174948) | |
cut (0.169924) | |
nco (0.161734) | |
fat (0.147427) | |
nmm (0.132802) | |
kid (0.129735) | |
eep (0.122564) | |
cly (0.120642) |
Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
cbl (0.573987) | |
tes (0.415628) | |
spl (0.286369) | |
lnt (0.284616) | |
fce (0.271592) | |
sug (0.254582) | |
cbe (0.239234) | |
mgp (0.230681) | |
cty (0.20816) | |
fli (0.202881) | |
fcc (0.197785) | |
col (0.195008) | |
nlu (0.191681) | |
sin (0.174948) | |
cut (0.169924) | |
nco (0.161734) | |
fat (0.147427) | |
nmm (0.132802) | |
kid (0.129735) | |
eep (0.122564) | |
cly (0.120642) |