Non-Coding RNA Search

Ss1.1-Spl1-SPL010002B08.5

Sequence:


               
               GGAGCTTGCGCTGTAGGGCTGCCGGGCTGCTGGGGCTGTGCAGCGTGTGCAGGCGCCGCC
GCCTCTAGCCTCCGCTGTCCTTCCTCGCCGCCACCGCCGCCGCCGCCGTTCTCCCGCCTC
CGACTCCCCCGCCCCGCCGACACCCGGCTCCGGCTCCAGCCGCACCGCCCTCCGCGGCCG
CCACCTGGGGATCCCGAGCGAGGGGTGGTTGTCCTTGCCGGAAGGAACCATGAATTGGCA
TTTTCCCTTCTTCCTCGTGGCCACCGTGACGCTGCCTTCCGTGTGCTCCCAGTTCAACCC
TCTGTCGCTGGAGGAACTCGGCTCCGACACAGGAATCCAGGTTTTCAATCAGATTGTCAA
GTCCCGGCCTCATGACAACATCGTCATTTCCCCCCACGGGATTGCGTCGGTGCTGGGGAT
GCTGCAGCTGGGAGCTGACGGCAGGACCAAGAAGCAGCTTACCACAGTGATGAGATACGG
CGTGAACGGAGTCGGTAAAGTGTTAAAGAAGATCAACAAGGCCATCGTCTCCAAGAAGAA
TAAAGATATTGTGACCGTGGCCAACGCCGTGTTTGTGAAGAATGGCTTCAAAATGGAAGT
GCCTTTCGTCACGAGGAACAAAGACGTGTTTCAGTGTGAGGTCCGGAACGCGGACTTTGA
GGATCCAGCCTCTGCCTGTGACTCCATCAACCTGTGGGTTCGAAACGAAACCCGGGGTAT
GATCGACAGCCTGCTGTCCCCAGATCTTCTCGACAGTGTCCTCACCAGACTGGTTCTGGT
CAATGCGGTGTATTTTAAGGGTTTGTGGAAATCGAGGTTTCAGCCAGAGAACACAAAGAA
GCGCACGTTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCTTGCGCTGTAGGGCTGCCGGGCTGCTGGGGCTGTGCAGCGTGTGCAGGCGCCGCC
GCCTCTAGCCTCCGCTGTCCTTCCTCGCCGCCACCGCCGCCGCCGCCGTTCTCCCGCCTC
CGACTCCCCCGCCCCGCCGACACCCGGCTCCGGCTCCAGCCGCACCGCCCTCCGCGGCCG
CCACCTGGGGATCCCGAGCGAGGGGTGGTTGTCCTTGCCGGAAGGAACCATGAATTGGCA
TTTTCCCTTCTTCCTCGTGGCCACCGTGACGCTGCCTTCCGTGTGCTCCCAGTTCAACCC
TCTGTCGCTGGAGGAACTCGGCTCCGACACAGGAATCCAGGTTTTCAATCAGATTGTCAA
GTCCCGGCCTCATGACAACATCGTCATTTCCCCCCACGGGATTGCGTCGGTGCTGGGGAT
GCTGCAGCTGGGAGCTGACGGCAGGACCAAGAAGCAGCTTACCACAGTGATGAGATACGG
CGTGAACGGAGTCGGTAAAGTGTTAAAGAAGATCAACAAGGCCATCGTCTCCAAGAAGAA
TAAAGATATTGTGACCGTGGCCAACGCCGTGTTTGTGAAGAATGGCTTCAAAATGGAAGT
GCCTTTCGTCACGAGGAACAAAGACGTGTTTCAGTGTGAGGTCCGGAACGCGGACTTTGA
GGATCCAGCCTCTGCCTGTGACTCCATCAACCTGTGGGTTCGAAACGAAACCCGGGGTAT
GATCGACAGCCTGCTGTCCCCAGATCTTCTCGACAGTGTCCTCACCAGACTGGTTCTGGT
CAATGCGGTGTATTTTAAGGGTTTGTGGAAATCGAGGTTTCAGCCAGAGAACACAAAGAA
GCGCACGTTTGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55616719|ref|XP_516123.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55616719|ref|XP_516123.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               207-489, gnl|bosTau2|chr2 (68277789-68277507)
               

               
               207-489, gnl|Hg17|chr2 (224692145-224691863)
               

               
               207-489, gnl|Mm7|chr1 (80036437-80036155)
               


               
               716-852, gnl|bosTau2|chr2 (68267101-68266965)
               

               
               716-852, gnl|Hg17|chr2 (224682223-224682087)
               

               
               716-852, gnl|Mm7|chr1 (80025631-80025495)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               207-489, gnl|bosTau2|chr2 (68277789-68277507)
               

               
               207-489, gnl|Hg17|chr2 (224692145-224691863)
               

               
               207-489, gnl|Mm7|chr1 (80036437-80036155)
               


               
               716-852, gnl|bosTau2|chr2 (68267101-68266965)
               

               
               716-852, gnl|Hg17|chr2 (224682223-224682087)
               

               
               716-852, gnl|Mm7|chr1 (80025631-80025495)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ece (0.229305)
               

               
               csp (0.161186)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               csp (0.161186)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

	207-489, gnl\|bosTau2\|chr2 (68277789-68277507)
	207-489, gnl\|Hg17\|chr2 (224692145-224691863)
	207-489, gnl\|Mm7\|chr1 (80036437-80036155)

	716-852, gnl\|bosTau2\|chr2 (68267101-68266965)
	716-852, gnl\|Hg17\|chr2 (224682223-224682087)
	716-852, gnl\|Mm7\|chr1 (80025631-80025495)

	ece (0.229305)
	csp (0.161186)
	ute (0.132784)
	cov (0.132153)
	eru (0.120048)
	ebs (0.118301)