Non-Coding RNA Search

Ss1.1-Spl1-SPL010002C11.5

Sequence:


               
               GAGCGGGGGTGGGAGCCTACGGGAGTGACTTGCCCAAAAGGAAGCCCCGCGCCCCCCACC
GCCCTCCCCGCCTTTTCAAATCTCTGATTCTCGACTCGCGGGCGGAGTCTCTGTCCTCGT
GAAGTCCCGGGTTTGGGGTTTGGGGAAGTGAAAGTCAAAAGGGGCCGGGCTGGGCAGAGC
TCGTGACCCCCGCGCCTCGCTGTCCCAACACAGATTCCTAGACCTTTAGCTGTATGGCCA
CGCTGAGCCCCCTGCTATTGGCCGCGCTGCTCTGGGTCCCTGTGGGGACCCTGACCTGCT
ACGGAGACTCGGGGCAGCCTGTGGACTGGTTCGTTGTCTACAAGCTGCCGGCCCACAGCA
GTCCCGGAGATGTGGCTCAGAGCGGGCTCCGGTACAAGTACTTGGACGAGGAGTCAGGAG
GCTGGCGCGACGGCGCGGGGTCCATCAACAGCTCCACAGGCGCCTTGGGCCGCAGCCTGC
TGCCGCTGTACCGAAACACCAGCCAGCTAGCTTTCCTGCTCTACAATGATCAACCGCCTA
AATACAGAGGATCTCAGCACTCTTCCAACCGTGGGCACACGAAGGGTGTACTGCTCCTGG
ACCAAGAAGGGGGCTTCTGGCTAATCCACAGCGTTCCAAACTTCCCTCCACCTTCCTCCT
CTGCTGCATACAGCTGGCCTCCTAGCGCCCGAACCTATGGGCAGACACTGATCTGCGTAT
CTTTCCCTCTCACCCAGTTCCTGAATATCAGCAGACAGCTGACCTACACCTACCCCATGG
TGTATGATTACAAGCTGGAGGGAGACTTCGCCAGGAAATTCCCCTACCTGGAGGAGGTAG
TCAAGGGCCATCATGTTCTCCAGGAACCCTGGAACAGCAGTGTAACACTCACATCAAAAG
CAGGGGCCTCATTCCAGAGCTTTGCTAAGTGTGGAAACTTTGGAGACGACCTGTACTCTG
GCTGGTTGGCAGAAGCCCTTGGCAGCAACCTGCAGGTCCAATTCTGGCAAAGATCTGCTG
GAATCCTGCCCTCCAACTGCTCTGGGGTCCAGCACGTGCTGGATGTGACCCAGATAGCCT
TTCCTGGCCCAGCGGGGCCAAACTTCAATGCCACAGAAGACCACTCCAAGTGGTGTGTAG
CCCCAGAAAGGCCCTGGACCTGTGTGGGTGACATGAATCGGAACAAAAGAGAGGAGCATC
GGGGTGGGGGCACACTGTGTGCCCAGCTGCCTGCACTCTGGAAGGCCTTCAAGCCTCTGG
TGAAGGCCTGGGAGCCCTGTGAGAAGGAGAACAGGGCCTTCTCTCCAAGAAGCCCAGCAA
AGGATTAAGGCTCAGGGGCCAATTCAGACTTCAGTTTGAATCTGTTTAGTCCCCTCTCAA
CAGTTCAGCCTTAATTGTGTGCCTCTGTGACTCAGTCTACTCATCTGCAAAATGGGAATC
CTAACACCTGCCTCAGGATTGCTAAGGAATAAAAGTGAATTGGTGAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCGGGGGTGGGAGCCTACGGGAGTGACTTGCCCAAAAGGAAGCCCCGCGCCCCCCACC
GCCCTCCCCGCCTTTTCAAATCTCTGATTCTCGACTCGCGGGCGGAGTCTCTGTCCTCGT
GAAGTCCCGGGTTTGGGGTTTGGGGAAGTGAAAGTCAAAAGGGGCCGGGCTGGGCAGAGC
TCGTGACCCCCGCGCCTCGCTGTCCCAACACAGATTCCTAGACCTTTAGCTGTATGGCCA
CGCTGAGCCCCCTGCTATTGGCCGCGCTGCTCTGGGTCCCTGTGGGGACCCTGACCTGCT
ACGGAGACTCGGGGCAGCCTGTGGACTGGTTCGTTGTCTACAAGCTGCCGGCCCACAGCA
GTCCCGGAGATGTGGCTCAGAGCGGGCTCCGGTACAAGTACTTGGACGAGGAGTCAGGAG
GCTGGCGCGACGGCGCGGGGTCCATCAACAGCTCCACAGGCGCCTTGGGCCGCAGCCTGC
TGCCGCTGTACCGAAACACCAGCCAGCTAGCTTTCCTGCTCTACAATGATCAACCGCCTA
AATACAGAGGATCTCAGCACTCTTCCAACCGTGGGCACACGAAGGGTGTACTGCTCCTGG
ACCAAGAAGGGGGCTTCTGGCTAATCCACAGCGTTCCAAACTTCCCTCCACCTTCCTCCT
CTGCTGCATACAGCTGGCCTCCTAGCGCCCGAACCTATGGGCAGACACTGATCTGCGTAT
CTTTCCCTCTCACCCAGTTCCTGAATATCAGCAGACAGCTGACCTACACCTACCCCATGG
TGTATGATTACAAGCTGGAGGGAGACTTCGCCAGGAAATTCCCCTACCTGGAGGAGGTAG
TCAAGGGCCATCATGTTCTCCAGGAACCCTGGAACAGCAGTGTAACACTCACATCAAAAG
CAGGGGCCTCATTCCAGAGCTTTGCTAAGTGTGGAAACTTTGGAGACGACCTGTACTCTG
GCTGGTTGGCAGAAGCCCTTGGCAGCAACCTGCAGGTCCAATTCTGGCAAAGATCTGCTG
GAATCCTGCCCTCCAACTGCTCTGGGGTCCAGCACGTGCTGGATGTGACCCAGATAGCCT
TTCCTGGCCCAGCGGGGCCAAACTTCAATGCCACAGAAGACCACTCCAAGTGGTGTGTAG
CCCCAGAAAGGCCCTGGACCTGTGTGGGTGACATGAATCGGAACAAAAGAGAGGAGCATC
GGGGTGGGGGCACACTGTGTGCCCAGCTGCCTGCACTCTGGAAGGCCTTCAAGCCTCTGG
TGAAGGCCTGGGAGCCCTGTGAGAAGGAGAACAGGGCCTTCTCTCCAAGAAGCCCAGCAA
AGGATTAAGGCTCAGGGGCCAATTCAGACTTCAGTTTGAATCTGTTTAGTCCCCTCTCAA
CAGTTCAGCCTTAATTGTGTGCCTCTGTGACTCAGTCTACTCATCTGCAAAATGGGAATC
CTAACACCTGCCTCAGGATTGCTAAGGAATAAAAGTGAATTGGTGAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|47523470|ref|NP_999361.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|47523470|ref|NP_999361.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               213-330, + strand, RNAz p=0.581605
               

               
               1107-1299, + strand, RNAz p=0.993305

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               213-330, + strand, RNAz p=0.581605
               

               
               1107-1299, + strand, RNAz p=0.993305

Homologous human UTR: 2 entry(ies)

More info

Homologous human UTR: 2 entry(ies)

Help | Less info


               
               3' of NM_001375, +
               

               
               5' of NM_001375, +

Homologous human UTR: 2 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001375, +
               

               
               5' of NM_001375, +

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

Help | Less info


               
               6-330, gnl|bosTau2|chr7 (8542942-8542609)
               

               
               6-330, gnl|Hg17|chr19 (12853371-12853102)
               


               
               751-946, gnl|bosTau2|chr7 (8541558-8541363)
               

               
               751-946, gnl|Hg17|chr19 (12850393-12850198)
               

               
               751-946, gnl|Mm7|chr8 (83495882-83496077)
               


               
               948-1487, gnl|bosTau2|chr7 (8540938-8540429)
               

               
               948-1487, gnl|Hg17|chr19 (12848178-12847023)
               

               
               948-1487, gnl|Mm7|chr8 (83496795-83497814)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-330, gnl|bosTau2|chr7 (8542942-8542609)
               

               
               6-330, gnl|Hg17|chr19 (12853371-12853102)
               


               
               751-946, gnl|bosTau2|chr7 (8541558-8541363)
               

               
               751-946, gnl|Hg17|chr19 (12850393-12850198)
               

               
               751-946, gnl|Mm7|chr8 (83495882-83496077)
               


               
               948-1487, gnl|bosTau2|chr7 (8540938-8540429)
               

               
               948-1487, gnl|Hg17|chr19 (12848178-12847023)
               

               
               948-1487, gnl|Mm7|chr8 (83496795-83497814)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

Help | Less info


               
               ute (0.663922)
               

               
               mas (0.42061)
               

               
               col (0.390016)
               

               
               lnt (0.284616)
               

               
               med (0.232504)
               

               
               jca (0.22792)
               

               
               fli (0.202881)
               

               
               nlu (0.191681)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.663922)
               

               
               mas (0.42061)
               

               
               col (0.390016)
               

               
               lnt (0.284616)
               

               
               med (0.232504)
               

               
               jca (0.22792)
               

               
               fli (0.202881)
               

               
               nlu (0.191681)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

	213-330, + strand, RNAz p=0.581605
	1107-1299, + strand, RNAz p=0.993305

	6-330, gnl\|bosTau2\|chr7 (8542942-8542609)
	6-330, gnl\|Hg17\|chr19 (12853371-12853102)

	751-946, gnl\|bosTau2\|chr7 (8541558-8541363)
	751-946, gnl\|Hg17\|chr19 (12850393-12850198)
	751-946, gnl\|Mm7\|chr8 (83495882-83496077)

	948-1487, gnl\|bosTau2\|chr7 (8540938-8540429)
	948-1487, gnl\|Hg17\|chr19 (12848178-12847023)
	948-1487, gnl\|Mm7\|chr8 (83496795-83497814)

	ute (0.663922)
	mas (0.42061)
	col (0.390016)
	lnt (0.284616)
	med (0.232504)
	jca (0.22792)
	fli (0.202881)
	nlu (0.191681)
	nco (0.161734)
	csp (0.161186)
	liv (0.146284)
	hyp (0.142837)
	pty (0.142714)
	pla (0.133672)
	clu (0.119646)
	cty (0.10408)