Ss1.1-Spl1-SPL010002G05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAAGACAAGCACATTCTTGCAAAGATTCGGTGGAAATATATGATAGTGGACGAGGGCCA CCGAATGAAGAATCACCACTGCAAGCTGACTCAGGTCTTGAACACTCACTACGTGGCCCC CAGGAGGATCCTCTTGACCGGGACCCCACTGCAGAATAAGCTGCCGGAACTCTGGGCCCT CCTCAACTTCCTCCTCCCCACGATTTTTAAGAGTTGCAGCACATTTGAACAGTGGTTTAA TGCTCCATTTGCCATGACTGGAGAGAGGGTGGACTTAAATGAAGAAGAAACTATATTGAT CATCAGGCGTCTACATAAGGTGTTGAGACCATTTTTACTGAGGAGACTGAAGAAAGAAGT TGAATCCCAGCTTCCAGAAAAAGTTGAATATGTGATCAAGTGTGACATGTCAGCTTTGCA GAAGATTCTGTATCGTCATATGCAAGCCAAAGGCATCCTCCTCACAGATGGTTCTGAGAA AGATAAGAAGGGGAAAGGAGGTGCTAAGACACTTATGAACACTATCATGCAATTGAGAAA AATCTGCAATCACCCCTATATGTTTCAGCACATTGAGGAATCCTTTGCAGAACACCTGGG CTATTCAAATGGGGTCATCAATGGGGCCGAGCTGTATCGGGCCTCAGGAAAGTTTGAGCT ACTTGATCGTATTCTGCCAAAATTGAGAGCGACTAATCACCGCGTGCTGCTTTTCTGCCA GATGACGTCTCTCATGACCATCATGGAGGATTACTTTGCTTTTCGGAACTTCCTTTACCT GCGCCTTGATGGCACCACCAAGTCTGAAGATCGTGCTGCTCTGCTGAAGAAATTCAATGA ACCCGGGTCCCAGTATTTCATCTTCTTGCTGAGCACGAGAGCTGGAGGCCTGGGCCTAAA CCTCCAGGCAGCTGATACTGTGGTCATCTTTGACAGCGACTGGAATCCTCACCAGGACCT GCAAGCACAGGACCGTGCTCACCGCATTGGCCAGCAGAACGAGGTCCGCGTACTGAGACT CTGTACCGTGAACAGCGTGGAGGAAAAGATTCTCGCAGCCGCCAAGTACAAGCTGAATGT GGATCAGAAAGTGATCCAGGCGGGCATGTTTGATCAAAAGTCTTCAAGCCATGAGCGGAG GGCATTCCTGCAGGCCATACTGGAGCATGAAGAGGAAAATGAGGAAGAAGATGAAGTGCC CGACGATGAGAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAAGACAAGCACATTCTTGCAAAGATTCGGTGGAAATATATGATAGTGGACGAGGGCCA CCGAATGAAGAATCACCACTGCAAGCTGACTCAGGTCTTGAACACTCACTACGTGGCCCC CAGGAGGATCCTCTTGACCGGGACCCCACTGCAGAATAAGCTGCCGGAACTCTGGGCCCT CCTCAACTTCCTCCTCCCCACGATTTTTAAGAGTTGCAGCACATTTGAACAGTGGTTTAA TGCTCCATTTGCCATGACTGGAGAGAGGGTGGACTTAAATGAAGAAGAAACTATATTGAT CATCAGGCGTCTACATAAGGTGTTGAGACCATTTTTACTGAGGAGACTGAAGAAAGAAGT TGAATCCCAGCTTCCAGAAAAAGTTGAATATGTGATCAAGTGTGACATGTCAGCTTTGCA GAAGATTCTGTATCGTCATATGCAAGCCAAAGGCATCCTCCTCACAGATGGTTCTGAGAA AGATAAGAAGGGGAAAGGAGGTGCTAAGACACTTATGAACACTATCATGCAATTGAGAAA AATCTGCAATCACCCCTATATGTTTCAGCACATTGAGGAATCCTTTGCAGAACACCTGGG CTATTCAAATGGGGTCATCAATGGGGCCGAGCTGTATCGGGCCTCAGGAAAGTTTGAGCT ACTTGATCGTATTCTGCCAAAATTGAGAGCGACTAATCACCGCGTGCTGCTTTTCTGCCA GATGACGTCTCTCATGACCATCATGGAGGATTACTTTGCTTTTCGGAACTTCCTTTACCT GCGCCTTGATGGCACCACCAAGTCTGAAGATCGTGCTGCTCTGCTGAAGAAATTCAATGA ACCCGGGTCCCAGTATTTCATCTTCTTGCTGAGCACGAGAGCTGGAGGCCTGGGCCTAAA CCTCCAGGCAGCTGATACTGTGGTCATCTTTGACAGCGACTGGAATCCTCACCAGGACCT GCAAGCACAGGACCGTGCTCACCGCATTGGCCAGCAGAACGAGGTCCGCGTACTGAGACT CTGTACCGTGAACAGCGTGGAGGAAAAGATTCTCGCAGCCGCCAAGTACAAGCTGAATGT GGATCAGAAAGTGATCCAGGCGGGCATGTTTGATCAAAAGTCTTCAAGCCATGAGCGGAG GGCATTCCTGCAGGCCATACTGGAGCATGAAGAGGAAAATGAGGAAGAAGATGAAGTGCC CGACGATGAGAC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 24-272, gnl|bosTau2|chr7 (10137737-10137985) | |
| 24-272, gnl|canFam2|chr20 (53216137-53215890) | |
| 24-272, gnl|danRer3|chr3 (9924640-9924378) | |
| 24-272, gnl|dasNov1|scaffold_25676 (69648-69402) | |
| 24-272, gnl|echTel1|scaffold_287419 (27713-27459) | |
| 24-272, gnl|fr1|chrUn (91992366-91992613) | |
| 24-272, gnl|galGal2|chrZ_random (665275-665522) | |
| 24-272, gnl|hg17|chr19 (10993399-10993657) | |
| 24-272, gnl|Hg17|chr19 (10993399-10993647) | |
| 24-272, gnl|loxAfr1|scaffold_25347 (20113-20367) | |
| 24-272, gnl|mm7|chr9 (21546363-21546617) | |
| 24-272, gnl|Mm7|chr9 (21546363-21546611) | |
| 24-272, gnl|monDom2|scaffold_106 (2994089-2994347) | |
| 24-272, gnl|oryCun1|scaffold_189208 (409-659) | |
| 24-272, gnl|panTro1|chr20 (11393338-11393596) | |
| 24-272, gnl|rheMac2|chr19 (10838514-10838772) | |
| 24-272, gnl|rn3|chr8 (20776737-20776991) | |
| 24-272, gnl|tetNig1|chr18 (3660768-3661015) | |
| 24-272, gnl|xenTro1|scaffold_1142 (96530-96274) | |
| 629-792, gnl|bosTau2|chr7 (10144105-10144268) | |
| 629-792, gnl|canFam2|chr20 (53209764-53209574) | |
| 629-792, gnl|danRer3|chr3 (9921482-9921305) | |
| 629-792, gnl|dasNov1|scaffold_294922 (578-388) | |
| 629-792, gnl|echTel1|scaffold_287419 (21796-21610) | |
| 629-792, gnl|fr1|chrUn (91993615-91993789) | |
| 629-792, gnl|galGal2|chrZ_random (673833-674010) | |
| 629-792, gnl|hg17|chr19 (10999454-10999644) | |
| 629-792, gnl|Hg17|chr19 (10999464-10999627) | |
| 629-792, gnl|loxAfr1|scaffold_11798 (25878-25699) | |
| 629-792, gnl|mm7|chr9 (21552363-21552552) | |
| 629-792, gnl|Mm7|chr9 (21552373-21552536) | |
| 629-792, gnl|monDom2|scaffold_106 (3002153-3002336) | |
| 629-792, gnl|oryCun1|scaffold_189208 (6080-6254) | |
| 629-792, gnl|panTro1|chr20 (11399395-11399585) | |
| 629-792, gnl|rheMac2|chr19 (10845825-10846019) | |
| 629-792, gnl|rn3|chr8 (20783058-20783248) | |
| 629-792, gnl|tetNig1|chr18 (3661987-3662163) | |
| 629-792, gnl|xenTro1|scaffold_1142 (92552-92372) | |
| 952-1184, gnl|bosTau2|chr7 (10149127-10149359) | |
| 952-1184, gnl|canFam2|chr1 (93873476-93873713) | |
| 952-1184, gnl|danRer3|chr5 (52120010-52120246) | |
| 952-1184, gnl|dasNov1|scaffold_25676 (37608-37372) | |
| 952-1184, gnl|echTel1|scaffold_288863 (50777-51011) | |
| 952-1184, gnl|fr1|chrUn (64384846-64385081) | |
| 952-1184, gnl|galGal2|chrZ_random (679079-679312) | |
| 952-1184, gnl|Hg17|chr19 (11004962-11005194) | |
| 952-1184, gnl|hg17|chr9 (2105818-2106055) | |
| 952-1184, gnl|loxAfr1|scaffold_11798 (5507-5271) | |
| 952-1184, gnl|mm7|chr19 (26410479-26410716) | |
| 952-1184, gnl|Mm7|chr9 (21556645-21556877) | |
| 952-1184, gnl|monDom2|scaffold_17 (24478430-24478664) | |
| 952-1184, gnl|oryCun1|scaffold_215417 (249716-249953) | |
| 952-1184, gnl|panTro1|chr11 (2066270-2066507) | |
| 952-1184, gnl|rheMac2|chr15 (75120692-75120455) | |
| 952-1184, gnl|rn3|chr1 (230282005-230282242) | |
| 952-1184, gnl|tetNig1|chr18 (3662593-3662832) | |
| 952-1184, gnl|xenTro1|scaffold_815 (431051-431288) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 24-272, gnl|bosTau2|chr7 (10137737-10137985) | |
| 24-272, gnl|canFam2|chr20 (53216137-53215890) | |
| 24-272, gnl|danRer3|chr3 (9924640-9924378) | |
| 24-272, gnl|dasNov1|scaffold_25676 (69648-69402) | |
| 24-272, gnl|echTel1|scaffold_287419 (27713-27459) | |
| 24-272, gnl|fr1|chrUn (91992366-91992613) | |
| 24-272, gnl|galGal2|chrZ_random (665275-665522) | |
| 24-272, gnl|hg17|chr19 (10993399-10993657) | |
| 24-272, gnl|Hg17|chr19 (10993399-10993647) | |
| 24-272, gnl|loxAfr1|scaffold_25347 (20113-20367) | |
| 24-272, gnl|mm7|chr9 (21546363-21546617) | |
| 24-272, gnl|Mm7|chr9 (21546363-21546611) | |
| 24-272, gnl|monDom2|scaffold_106 (2994089-2994347) | |
| 24-272, gnl|oryCun1|scaffold_189208 (409-659) | |
| 24-272, gnl|panTro1|chr20 (11393338-11393596) | |
| 24-272, gnl|rheMac2|chr19 (10838514-10838772) | |
| 24-272, gnl|rn3|chr8 (20776737-20776991) | |
| 24-272, gnl|tetNig1|chr18 (3660768-3661015) | |
| 24-272, gnl|xenTro1|scaffold_1142 (96530-96274) | |
| 629-792, gnl|bosTau2|chr7 (10144105-10144268) | |
| 629-792, gnl|canFam2|chr20 (53209764-53209574) | |
| 629-792, gnl|danRer3|chr3 (9921482-9921305) | |
| 629-792, gnl|dasNov1|scaffold_294922 (578-388) | |
| 629-792, gnl|echTel1|scaffold_287419 (21796-21610) | |
| 629-792, gnl|fr1|chrUn (91993615-91993789) | |
| 629-792, gnl|galGal2|chrZ_random (673833-674010) | |
| 629-792, gnl|hg17|chr19 (10999454-10999644) | |
| 629-792, gnl|Hg17|chr19 (10999464-10999627) | |
| 629-792, gnl|loxAfr1|scaffold_11798 (25878-25699) | |
| 629-792, gnl|mm7|chr9 (21552363-21552552) | |
| 629-792, gnl|Mm7|chr9 (21552373-21552536) | |
| 629-792, gnl|monDom2|scaffold_106 (3002153-3002336) | |
| 629-792, gnl|oryCun1|scaffold_189208 (6080-6254) | |
| 629-792, gnl|panTro1|chr20 (11399395-11399585) | |
| 629-792, gnl|rheMac2|chr19 (10845825-10846019) | |
| 629-792, gnl|rn3|chr8 (20783058-20783248) | |
| 629-792, gnl|tetNig1|chr18 (3661987-3662163) | |
| 629-792, gnl|xenTro1|scaffold_1142 (92552-92372) | |
| 952-1184, gnl|bosTau2|chr7 (10149127-10149359) | |
| 952-1184, gnl|canFam2|chr1 (93873476-93873713) | |
| 952-1184, gnl|danRer3|chr5 (52120010-52120246) | |
| 952-1184, gnl|dasNov1|scaffold_25676 (37608-37372) | |
| 952-1184, gnl|echTel1|scaffold_288863 (50777-51011) | |
| 952-1184, gnl|fr1|chrUn (64384846-64385081) | |
| 952-1184, gnl|galGal2|chrZ_random (679079-679312) | |
| 952-1184, gnl|Hg17|chr19 (11004962-11005194) | |
| 952-1184, gnl|hg17|chr9 (2105818-2106055) | |
| 952-1184, gnl|loxAfr1|scaffold_11798 (5507-5271) | |
| 952-1184, gnl|mm7|chr19 (26410479-26410716) | |
| 952-1184, gnl|Mm7|chr9 (21556645-21556877) | |
| 952-1184, gnl|monDom2|scaffold_17 (24478430-24478664) | |
| 952-1184, gnl|oryCun1|scaffold_215417 (249716-249953) | |
| 952-1184, gnl|panTro1|chr11 (2066270-2066507) | |
| 952-1184, gnl|rheMac2|chr15 (75120692-75120455) | |
| 952-1184, gnl|rn3|chr1 (230282005-230282242) | |
| 952-1184, gnl|tetNig1|chr18 (3662593-3662832) | |
| 952-1184, gnl|xenTro1|scaffold_815 (431051-431288) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ssp (0.13552) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ecc (0.115035) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ssp (0.13552) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ecc (0.115035) |