Ss1.1-Spl1-SPL010003A04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGCGCCGGGGCTGCCGGGGGAGGCCCCTGTGGTTTCTGAGGAGATAGTTTTTCGAGAAC TTTCTCCGGCAGGGGCTGTGAGATGCTTGGTGGAGAGCTGCCCTCGCTTTTGGCCCCAGC TCGCGTCCTCTAGGAGTCGCTCTTGCGGCCTTTCTGGCCGGCGTGGTGGTGGGAGAGTTT GGGGGCGACGAGGCGTGCGTGGTGGCTGTGGAGAACTCGGAAACCGGCGCGCCTCTCCCT GTTGGAAGGCTTCTAGCACCAGGATGAGTCTGCAGTGGACTGCAGTTGCCACCTTCCTCT ATGCGGAGGTCTTCGCTGTGCTGCTTCTCTGCATTCCCTTCATTTCTCCCAAAAGATGGC AGAAGATTTTCAAGTCCCGCCTTGTGGAGTTGGTAGTGACCTATGGCAACACCTTCTTTG TGGTTCTCATCGTCATCCTCGTGCTGCTGGTCATTGATGCTCTTCGGGAGATTCGCAAGT ACGACGATGTGACCGAGAAGGTGAACCTGCAGAACAATCCCGGGGCTGTGGAGCATTTCC ACATGAAGCTCTTCCGGGCCCAGAGGAACCTCTACATCGCCGGCTTCTCCTTGCTGCTGT CCTTCCTGCTTAGACGCCTGGTAACTCTCATCTCCCAGCAGGCCACGCTGCTGGCCTCCA ATGAAGCCTTTAAAAAGCAGGCAGAGAGCGCTAGTGAAGCAGCCAAGAAGTACATGGAAG AGAACGACCAGCTGAAGAAGGAAGCTGCTGTGGGCGGAGTCAAGTTAGATGGCGGCGACG CAGGAGGGAAGGTGGAGGAAGAGAACAGGAGCCTGAAGGCTGAGCTGAAGAGGCTGAAGG AAGAGCTGGCCGTCAGCAAGCAGAAGCTGGAGAAGGCTGAAAACGAGGCTCTGGCCATGC GGAAGCAGTCGGAGGGCCTCACCAAGGAGTACGACCGCCTGTTGGAGGAGCACACAAAGC TGCAGGCGGCGGTAGATGGCCCCACGGACAAGAAGGAGGAGTGAGGGCCCCTGTTCCCTG CCCGTGGCTGGCTGCTTCGCGAGAGCCCAGCCTCCCTCGGCACTTCGGCTCGCTCCCCTC CGCTGCTGTTTCCCCGCGCTGCTTGCAGTTCCACGCGCCCCCAGCATTCTGTAGGGGACC CAGTTCCCGTCCAGGATGAGCAGGGCTTGCTTTCCGCTGGATTGAGCCCCTTTGTGTTAC GTGTTGCTGTTCGCGCCTCCAAGGCCCCCTTTCTCTGGTCCTGCAGGAAGGCAGATGGAG CAGGAAGAGTAGAGGTTTCTCGGGGCAATAAAGGTTGTTGTGATGTGTTAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGCGCCGGGGCTGCCGGGGGAGGCCCCTGTGGTTTCTGAGGAGATAGTTTTTCGAGAAC TTTCTCCGGCAGGGGCTGTGAGATGCTTGGTGGAGAGCTGCCCTCGCTTTTGGCCCCAGC TCGCGTCCTCTAGGAGTCGCTCTTGCGGCCTTTCTGGCCGGCGTGGTGGTGGGAGAGTTT GGGGGCGACGAGGCGTGCGTGGTGGCTGTGGAGAACTCGGAAACCGGCGCGCCTCTCCCT GTTGGAAGGCTTCTAGCACCAGGATGAGTCTGCAGTGGACTGCAGTTGCCACCTTCCTCT ATGCGGAGGTCTTCGCTGTGCTGCTTCTCTGCATTCCCTTCATTTCTCCCAAAAGATGGC AGAAGATTTTCAAGTCCCGCCTTGTGGAGTTGGTAGTGACCTATGGCAACACCTTCTTTG TGGTTCTCATCGTCATCCTCGTGCTGCTGGTCATTGATGCTCTTCGGGAGATTCGCAAGT ACGACGATGTGACCGAGAAGGTGAACCTGCAGAACAATCCCGGGGCTGTGGAGCATTTCC ACATGAAGCTCTTCCGGGCCCAGAGGAACCTCTACATCGCCGGCTTCTCCTTGCTGCTGT CCTTCCTGCTTAGACGCCTGGTAACTCTCATCTCCCAGCAGGCCACGCTGCTGGCCTCCA ATGAAGCCTTTAAAAAGCAGGCAGAGAGCGCTAGTGAAGCAGCCAAGAAGTACATGGAAG AGAACGACCAGCTGAAGAAGGAAGCTGCTGTGGGCGGAGTCAAGTTAGATGGCGGCGACG CAGGAGGGAAGGTGGAGGAAGAGAACAGGAGCCTGAAGGCTGAGCTGAAGAGGCTGAAGG AAGAGCTGGCCGTCAGCAAGCAGAAGCTGGAGAAGGCTGAAAACGAGGCTCTGGCCATGC GGAAGCAGTCGGAGGGCCTCACCAAGGAGTACGACCGCCTGTTGGAGGAGCACACAAAGC TGCAGGCGGCGGTAGATGGCCCCACGGACAAGAAGGAGGAGTGAGGGCCCCTGTTCCCTG CCCGTGGCTGGCTGCTTCGCGAGAGCCCAGCCTCCCTCGGCACTTCGGCTCGCTCCCCTC CGCTGCTGTTTCCCCGCGCTGCTTGCAGTTCCACGCGCCCCCAGCATTCTGTAGGGGACC CAGTTCCCGTCCAGGATGAGCAGGGCTTGCTTTCCGCTGGATTGAGCCCCTTTGTGTTAC GTGTTGCTGTTCGCGCCTCCAAGGCCCCCTTTCTCTGGTCCTGCAGGAAGGCAGATGGAG CAGGAAGAGTAGAGGTTTCTCGGGGCAATAAAGGTTGTTGTGATGTGTTAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 66 entry(ies) | More info |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
| 6-154, gnl|bosTau2|chrX (13546178-13546325) | |
| 6-154, gnl|canFam2|chrX (124587982-124588137) | |
| 6-154, gnl|dasNov1|scaffold_21882 (8321-8195) | |
| 6-154, gnl|echTel1|scaffold_258963 (10578-10714) | |
| 6-154, gnl|hg17|chrX (152510187-152510331) | |
| 6-154, gnl|Hg17|chrX (152510328-152510185) | |
| 6-154, gnl|loxAfr1|scaffold_26735 (12311-12161) | |
| 6-154, gnl|mm7|chrX (69102314-69102466) | |
| 6-154, gnl|Mm7|chrX (69102463-69102310) | |
| 6-154, gnl|oryCun1|scaffold_71666 (1944-1790) | |
| 6-154, gnl|rheMac2|chrX (151837488-151837631) | |
| 6-154, gnl|rn3|chrX (159688090-159688238) | |
| 217-355, gnl|bosTau2|chrX (13546746-13546883) | |
| 217-355, gnl|canFam2|chrX (124587228-124587374) | |
| 217-355, gnl|danRer3|chr11 (8420847-8420715) | |
| 217-355, gnl|dasNov1|scaffold_21882 (9089-8943) | |
| 217-355, gnl|echTel1|scaffold_258963 (10373-10474) | |
| 217-355, gnl|fr1|chrUn (208545045-208544936) | |
| 217-355, gnl|hg17|chrX (152509431-152509577) | |
| 217-355, gnl|Hg17|chrX (152509594-152509455) | |
| 217-355, gnl|loxAfr1|scaffold_26735 (13429-13313) | |
| 217-355, gnl|mm7|chrX (69101418-69101564) | |
| 217-355, gnl|Mm7|chrX (69101581-69101442) | |
| 217-355, gnl|monDom2|scaffold_178 (1207881-1207999) | |
| 217-355, gnl|oryCun1|scaffold_213385 (17275-17132) | |
| 217-355, gnl|panTro1|chrX (157795010-157795156) | |
| 217-355, gnl|rheMac2|chrX (151836732-151836878) | |
| 217-355, gnl|rn3|chrX (159687191-159687337) | |
| 217-355, gnl|tetNig1|chrUn_random (100837734-100837637) | |
| 217-355, gnl|xenTro1|scaffold_82 (1306070-1306199) | |
| 456-604, gnl|bosTau2|chrX (13552023-13552171) | |
| 456-604, gnl|canFam2|chrX (124578366-124578541) | |
| 456-604, gnl|danRer3|chr11 (8424156-8423997) | |
| 456-604, gnl|dasNov1|scaffold_158080 (2074-1894) | |
| 456-604, gnl|echTel1|scaffold_258963 (6049-6222) | |
| 456-604, gnl|fr1|chrUn (208547142-208546987) | |
| 456-604, gnl|hg17|chrX (152501838-152502016) | |
| 456-604, gnl|Hg17|chrX (152501992-152501844) | |
| 456-604, gnl|loxAfr1|scaffold_26735 (19015-18841) | |
| 456-604, gnl|mm7|chrX (69093640-69093813) | |
| 456-604, gnl|Mm7|chrX (69093794-69093646) | |
| 456-604, gnl|monDom2|scaffold_178 (1204629-1204820) | |
| 456-604, gnl|oryCun1|scaffold_213385 (25159-24984) | |
| 456-604, gnl|panTro1|chrX (157787328-157787506) | |
| 456-604, gnl|rheMac2|chrX (151828079-151828257) | |
| 456-604, gnl|rn3|chrX (159679830-159680003) | |
| 456-604, gnl|tetNig1|chrUn_random (100838631-100838464) | |
| 456-604, gnl|xenTro1|scaffold_82 (1302730-1302894) | |
| 606-741, gnl|bosTau2|chrX (13571660-13571795) | |
| 606-741, gnl|Hg17|chrX (152490395-152490260) | |
| 606-741, gnl|Mm7|chrX (69076330-69076195) | |
| 761-862, gnl|bosTau2|chrX (13572667-13572768) | |
| 761-862, gnl|canFam2|chrX (124561057-124561126) | |
| 761-862, gnl|echTel1|scaffold_189097 (3341-3272) | |
| 761-862, gnl|hg17|chrX (152489238-152489307) | |
| 761-862, gnl|Hg17|chrX (152489340-152489239) | |
| 761-862, gnl|mm7|chrX (69075310-69075376) | |
| 761-862, gnl|Mm7|chrX (69075409-69075311) | |
| 761-862, gnl|monDom2|scaffold_178 (1182753-1182816) | |
| 761-862, gnl|panTro1|chrX_random (29297259-29297330) | |
| 761-862, gnl|rheMac2|chrX (151811860-151811929) | |
| 761-862, gnl|rn3|chrX (159660738-159660804) | |
| 761-862, gnl|xenTro1|scaffold_82 (1298473-1298542) | |
| 960-1308, gnl|bosTau2|chrX (13574527-13574889) | |
| 960-1308, gnl|Hg17|chrX (152487282-152486800) | |
| 960-1308, gnl|Mm7|chrX (69073250-69072827) |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-154, gnl|bosTau2|chrX (13546178-13546325) | |
| 6-154, gnl|canFam2|chrX (124587982-124588137) | |
| 6-154, gnl|dasNov1|scaffold_21882 (8321-8195) | |
| 6-154, gnl|echTel1|scaffold_258963 (10578-10714) | |
| 6-154, gnl|hg17|chrX (152510187-152510331) | |
| 6-154, gnl|Hg17|chrX (152510328-152510185) | |
| 6-154, gnl|loxAfr1|scaffold_26735 (12311-12161) | |
| 6-154, gnl|mm7|chrX (69102314-69102466) | |
| 6-154, gnl|Mm7|chrX (69102463-69102310) | |
| 6-154, gnl|oryCun1|scaffold_71666 (1944-1790) | |
| 6-154, gnl|rheMac2|chrX (151837488-151837631) | |
| 6-154, gnl|rn3|chrX (159688090-159688238) | |
| 217-355, gnl|bosTau2|chrX (13546746-13546883) | |
| 217-355, gnl|canFam2|chrX (124587228-124587374) | |
| 217-355, gnl|danRer3|chr11 (8420847-8420715) | |
| 217-355, gnl|dasNov1|scaffold_21882 (9089-8943) | |
| 217-355, gnl|echTel1|scaffold_258963 (10373-10474) | |
| 217-355, gnl|fr1|chrUn (208545045-208544936) | |
| 217-355, gnl|hg17|chrX (152509431-152509577) | |
| 217-355, gnl|Hg17|chrX (152509594-152509455) | |
| 217-355, gnl|loxAfr1|scaffold_26735 (13429-13313) | |
| 217-355, gnl|mm7|chrX (69101418-69101564) | |
| 217-355, gnl|Mm7|chrX (69101581-69101442) | |
| 217-355, gnl|monDom2|scaffold_178 (1207881-1207999) | |
| 217-355, gnl|oryCun1|scaffold_213385 (17275-17132) | |
| 217-355, gnl|panTro1|chrX (157795010-157795156) | |
| 217-355, gnl|rheMac2|chrX (151836732-151836878) | |
| 217-355, gnl|rn3|chrX (159687191-159687337) | |
| 217-355, gnl|tetNig1|chrUn_random (100837734-100837637) | |
| 217-355, gnl|xenTro1|scaffold_82 (1306070-1306199) | |
| 456-604, gnl|bosTau2|chrX (13552023-13552171) | |
| 456-604, gnl|canFam2|chrX (124578366-124578541) | |
| 456-604, gnl|danRer3|chr11 (8424156-8423997) | |
| 456-604, gnl|dasNov1|scaffold_158080 (2074-1894) | |
| 456-604, gnl|echTel1|scaffold_258963 (6049-6222) | |
| 456-604, gnl|fr1|chrUn (208547142-208546987) | |
| 456-604, gnl|hg17|chrX (152501838-152502016) | |
| 456-604, gnl|Hg17|chrX (152501992-152501844) | |
| 456-604, gnl|loxAfr1|scaffold_26735 (19015-18841) | |
| 456-604, gnl|mm7|chrX (69093640-69093813) | |
| 456-604, gnl|Mm7|chrX (69093794-69093646) | |
| 456-604, gnl|monDom2|scaffold_178 (1204629-1204820) | |
| 456-604, gnl|oryCun1|scaffold_213385 (25159-24984) | |
| 456-604, gnl|panTro1|chrX (157787328-157787506) | |
| 456-604, gnl|rheMac2|chrX (151828079-151828257) | |
| 456-604, gnl|rn3|chrX (159679830-159680003) | |
| 456-604, gnl|tetNig1|chrUn_random (100838631-100838464) | |
| 456-604, gnl|xenTro1|scaffold_82 (1302730-1302894) | |
| 606-741, gnl|bosTau2|chrX (13571660-13571795) | |
| 606-741, gnl|Hg17|chrX (152490395-152490260) | |
| 606-741, gnl|Mm7|chrX (69076330-69076195) | |
| 761-862, gnl|bosTau2|chrX (13572667-13572768) | |
| 761-862, gnl|canFam2|chrX (124561057-124561126) | |
| 761-862, gnl|echTel1|scaffold_189097 (3341-3272) | |
| 761-862, gnl|hg17|chrX (152489238-152489307) | |
| 761-862, gnl|Hg17|chrX (152489340-152489239) | |
| 761-862, gnl|mm7|chrX (69075310-69075376) | |
| 761-862, gnl|Mm7|chrX (69075409-69075311) | |
| 761-862, gnl|monDom2|scaffold_178 (1182753-1182816) | |
| 761-862, gnl|panTro1|chrX_random (29297259-29297330) | |
| 761-862, gnl|rheMac2|chrX (151811860-151811929) | |
| 761-862, gnl|rn3|chrX (159660738-159660804) | |
| 761-862, gnl|xenTro1|scaffold_82 (1298473-1298542) | |
| 960-1308, gnl|bosTau2|chrX (13574527-13574889) | |
| 960-1308, gnl|Hg17|chrX (152487282-152486800) | |
| 960-1308, gnl|Mm7|chrX (69073250-69072827) |
| Expressed library(ies): 43 entry(ies) | More info |
| Expressed library(ies): 43 entry(ies) | Help | Less info |
| cov (1.18937) | |
| csp (0.805932) | |
| nep (0.7357) | |
| jej (0.692452) | |
| fcc (0.593354) | |
| nje (0.49776) | |
| pgl (0.473934) | |
| jca (0.45584) | |
| hyp (0.42851) | |
| nca (0.410621) | |
| hea (0.408998) | |
| ute (0.398353) | |
| nlu (0.383362) | |
| nco (0.323468) | |
| ldo (0.291008) | |
| pty (0.285429) | |
| che (0.272628) | |
| fce (0.271592) | |
| ste (0.270416) | |
| cly (0.241284) | |
| ece (0.229305) | |
| nms (0.213858) | |
| mas (0.210305) | |
| fli (0.202881) | |
| fty (0.17584) | |
| ill (0.175593) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| cki (0.165235) | |
| eli (0.151814) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| cbr (0.127975) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 43 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (1.18937) | |
| csp (0.805932) | |
| nep (0.7357) | |
| jej (0.692452) | |
| fcc (0.593354) | |
| nje (0.49776) | |
| pgl (0.473934) | |
| jca (0.45584) | |
| hyp (0.42851) | |
| nca (0.410621) | |
| hea (0.408998) | |
| ute (0.398353) | |
| nlu (0.383362) | |
| nco (0.323468) | |
| ldo (0.291008) | |
| pty (0.285429) | |
| che (0.272628) | |
| fce (0.271592) | |
| ste (0.270416) | |
| cly (0.241284) | |
| ece (0.229305) | |
| nms (0.213858) | |
| mas (0.210305) | |
| fli (0.202881) | |
| fty (0.17584) | |
| ill (0.175593) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| cki (0.165235) | |
| eli (0.151814) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| cbr (0.127975) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| eje (0.0988338) |