Non-Coding RNA Search

Ss1.1-Spl1-SPL010003C03.5

Sequence:


               
               GTCTGTTCTGCCTCGCGGCAGCCGCCCCCTTTACGCCACGCTGAGCCAGCGCCCGGGCCT
GGAATCGGGCCACAGCCACCGCCGAGCCCGCCGCCTCCCGCCGCGCCCGGACCATGGACC
CCCGCAAAGTGAGCGAACTTCGAGCCTTCGTGAAAATGTGTAAGCAGGACCCGAGCGTTC
TGCACACCGAGGAAATGCGCTTCCTGAGGGAGTGGGTGGAGAGCATGGGGGGTAAAATAC
CACCTGCTACTCATAAAACTAAATCAGAAGAAAATACCAAGGAAGAAAAAACAGATAGTA
AGAAGGTGGAGGAAAACATAAAGACAGATGAACCGTCAAGTGAGGAAAGTGATCTGGAAA
TTGACAATGAAGGTGTGATTGAACCAGACACTGATGCTCCTCAGGAAATGGGAGATGAAA
ATGTAGAGATAACCGAGGAGATGATGGATCAGGCAAATGATAAAAAAGTGGCTGCCATCG
ATGCCCTAAATAATGGTGAACTGCAGAAAGCCATTGACTTGTTCACAGATGCCATCAAGC
TAAATCCTCGTTTGGCCATTCTGTATGCCAAGAGAGCCAGTGTCTTCATCAAATTACAGA
AGCCAAATGCTGCCATCCGAGACTGTGACAGAGCTATTGAAATAAATCCTGATTCAGCTC
AGCCATACAAGTGGCGAGGGAAAGCACACAGACTTTTGGGCCATTGGGAAGAAGCAGCCC
ATGATCTTGCCCTTGCCTGTAAGCTGGATTATGATGAAGATGCTAGTGCAATGCTGAAAG
AAGTTCAACCAAGGGCCCAAAAAATTGCTGAACATCGGCGCAAGTATGAGCGAAAACGTG
AAGAGCGAGAGATAAAAGAAAGAATAGAAAGGGTTAAGAAGGCTCGGGAAGAACATGAGA
GAGCCCAGAGGGAGGAAGAAGCCAGACGGCAATCAGGAGCTCAGTATGGCTCTTTTCCAG
GTGGTTTTCCTGGGGGAATGCCTGGTAATTTTCCTGGAGGAATGCCTGGAATGGGAGGGA
GCATGCCTGGAATGGCAGGAATGCCTGGGCTCAATGAAATTCTTAGTGATCCCGAGGTTC
TTGCAGCCATGCAGGATCCAGAAGTTATGGTGGCCTTCCAGGATGTGGCGCAGAACCCAG
CAAATATGTCGAAATATCAGAGCAACCCAAAGGTTATGAATCTCATCAGTAAATTGTCAG
CCAAATTTGGAGGTCAAGCGTAATGCCCTTCTGATAAATAAAGCCCTTGCTTAAGGAAAA
GCAACTTGGATCACCTAACGGATGTCGCAATAATACAAACCAGTGTACCTCTGACCTTCT
CATGAAGAAAGCTGGGGTGCTTTGAAGATAATCCCTACCCCTTTGCCCCAAGTGCAGCTG
AAACATTTTACAGTGGTTTGCCATTAGGTAGTCATTCATTCAGATAATGTTTTCCTACTA
GAAATTAAAAACTTTAAACACTTTTTAAACCTTAAAAATATTTAAGACAAATTAAAAGGT
TGTGTTAATCCCTACTTTTTTCTTTACTAATCATTTTAGTTTTTTCCTTTGAATTAATTA
GGCAAGGAAAATACTTCAGTATGGAAGATTTATTGTTCACATTTGAGTGAAATAAAGATT
TATTAATGAGGAGCAAATACAGCATTTAAATAGATAAAATTTAAGTTGGATATTTGGCTA
CTGAGGCATTTTGATTTGTCTTTTTAATTGCTTTGTTACTGTTATTTTTTAATGATTTGC
TTCCGTAAAAGTATTGGGACCACTGGTATTGCAGTAGGACCTGGGTAGGGACTGGAAGTA
CTTGGCAGGGCAGCAGCAATCTTACTACAGTTTCTATAATACGTACCCTTGTGCAGATGC
GTTTAAATCTTACACTGTGGTGAAGGGATGATTTTTATAATGCTGCAGTAGAATTGGGTT
ACATAGCTCTGTTCTTGTCTGATATCTAAAATAAATGTTTCATTTTATTTCCACATATGG
GAAATAAGGGAATATTTTTCTCTTTATGTTTCTATGTTTAAAATGTGCTATTCAGATCAG
AAAATGCCCAGACTCTTTAAAGTGTACTTTCTACTTGTTTTCACATTTTTTTCCTCTTCT
TGGGCTAAAGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTGTTCTGCCTCGCGGCAGCCGCCCCCTTTACGCCACGCTGAGCCAGCGCCCGGGCCT
GGAATCGGGCCACAGCCACCGCCGAGCCCGCCGCCTCCCGCCGCGCCCGGACCATGGACC
CCCGCAAAGTGAGCGAACTTCGAGCCTTCGTGAAAATGTGTAAGCAGGACCCGAGCGTTC
TGCACACCGAGGAAATGCGCTTCCTGAGGGAGTGGGTGGAGAGCATGGGGGGTAAAATAC
CACCTGCTACTCATAAAACTAAATCAGAAGAAAATACCAAGGAAGAAAAAACAGATAGTA
AGAAGGTGGAGGAAAACATAAAGACAGATGAACCGTCAAGTGAGGAAAGTGATCTGGAAA
TTGACAATGAAGGTGTGATTGAACCAGACACTGATGCTCCTCAGGAAATGGGAGATGAAA
ATGTAGAGATAACCGAGGAGATGATGGATCAGGCAAATGATAAAAAAGTGGCTGCCATCG
ATGCCCTAAATAATGGTGAACTGCAGAAAGCCATTGACTTGTTCACAGATGCCATCAAGC
TAAATCCTCGTTTGGCCATTCTGTATGCCAAGAGAGCCAGTGTCTTCATCAAATTACAGA
AGCCAAATGCTGCCATCCGAGACTGTGACAGAGCTATTGAAATAAATCCTGATTCAGCTC
AGCCATACAAGTGGCGAGGGAAAGCACACAGACTTTTGGGCCATTGGGAAGAAGCAGCCC
ATGATCTTGCCCTTGCCTGTAAGCTGGATTATGATGAAGATGCTAGTGCAATGCTGAAAG
AAGTTCAACCAAGGGCCCAAAAAATTGCTGAACATCGGCGCAAGTATGAGCGAAAACGTG
AAGAGCGAGAGATAAAAGAAAGAATAGAAAGGGTTAAGAAGGCTCGGGAAGAACATGAGA
GAGCCCAGAGGGAGGAAGAAGCCAGACGGCAATCAGGAGCTCAGTATGGCTCTTTTCCAG
GTGGTTTTCCTGGGGGAATGCCTGGTAATTTTCCTGGAGGAATGCCTGGAATGGGAGGGA
GCATGCCTGGAATGGCAGGAATGCCTGGGCTCAATGAAATTCTTAGTGATCCCGAGGTTC
TTGCAGCCATGCAGGATCCAGAAGTTATGGTGGCCTTCCAGGATGTGGCGCAGAACCCAG
CAAATATGTCGAAATATCAGAGCAACCCAAAGGTTATGAATCTCATCAGTAAATTGTCAG
CCAAATTTGGAGGTCAAGCGTAATGCCCTTCTGATAAATAAAGCCCTTGCTTAAGGAAAA
GCAACTTGGATCACCTAACGGATGTCGCAATAATACAAACCAGTGTACCTCTGACCTTCT
CATGAAGAAAGCTGGGGTGCTTTGAAGATAATCCCTACCCCTTTGCCCCAAGTGCAGCTG
AAACATTTTACAGTGGTTTGCCATTAGGTAGTCATTCATTCAGATAATGTTTTCCTACTA
GAAATTAAAAACTTTAAACACTTTTTAAACCTTAAAAATATTTAAGACAAATTAAAAGGT
TGTGTTAATCCCTACTTTTTTCTTTACTAATCATTTTAGTTTTTTCCTTTGAATTAATTA
GGCAAGGAAAATACTTCAGTATGGAAGATTTATTGTTCACATTTGAGTGAAATAAAGATT
TATTAATGAGGAGCAAATACAGCATTTAAATAGATAAAATTTAAGTTGGATATTTGGCTA
CTGAGGCATTTTGATTTGTCTTTTTAATTGCTTTGTTACTGTTATTTTTTAATGATTTGC
TTCCGTAAAAGTATTGGGACCACTGGTATTGCAGTAGGACCTGGGTAGGGACTGGAAGTA
CTTGGCAGGGCAGCAGCAATCTTACTACAGTTTCTATAATACGTACCCTTGTGCAGATGC
GTTTAAATCTTACACTGTGGTGAAGGGATGATTTTTATAATGCTGCAGTAGAATTGGGTT
ACATAGCTCTGTTCTTGTCTGATATCTAAAATAAATGTTTCATTTTATTTCCACATATGG
GAAATAAGGGAATATTTTTCTCTTTATGTTTCTATGTTTAAAATGTGCTATTCAGATCAG
AAAATGCCCAGACTCTTTAAAGTGTACTTTCTACTTGTTTTCACATTTTTTTCCTCTTCT
TGGGCTAAAGAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               ST13_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               ST13_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               150-1122, - strand, RNAz p=0.99915

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               150-1122, - strand, RNAz p=0.99915

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               90-570, gnl|bosTau2|chr5 (15530774-15531253)
               

               
               90-570, gnl|Hg17|chr2 (188515537-188516029)
               

               
               90-570, gnl|Mm7|chr7 (11738167-11737642)
               


               
               586-1975, gnl|bosTau2|chr5 (15531251-15532625)
               

               
               586-1975, gnl|Hg17|chr2 (188516027-188517430)
               


               
               886-1237, gnl|bosTau2|chr19 (48753702-48753348)
               

               
               886-1237, gnl|Hg17|chr13 (49644986-49645325)
               


               
               1466-1813, gnl|bosTau2|chr1 (22792600-22792939)
               

               
               1466-1813, gnl|Hg17|chr7 (132311172-132310839)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               90-570, gnl|bosTau2|chr5 (15530774-15531253)
               

               
               90-570, gnl|Hg17|chr2 (188515537-188516029)
               

               
               90-570, gnl|Mm7|chr7 (11738167-11737642)
               


               
               586-1975, gnl|bosTau2|chr5 (15531251-15532625)
               

               
               586-1975, gnl|Hg17|chr2 (188516027-188517430)
               


               
               886-1237, gnl|bosTau2|chr19 (48753702-48753348)
               

               
               886-1237, gnl|Hg17|chr13 (49644986-49645325)
               


               
               1466-1813, gnl|bosTau2|chr1 (22792600-22792939)
               

               
               1466-1813, gnl|Hg17|chr7 (132311172-132310839)

Expressed library(ies): 64 entry(ies)

More info

Expressed library(ies): 64 entry(ies)

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               csk (1.12597)
               

               
               ste (1.08167)
               

               
               lyg (0.931718)
               

               
               sme (0.91631)
               

               
               kid (0.908147)
               

               
               bla (0.87043)
               

               
               cty (0.832639)
               

               
               ldo (0.776021)
               

               
               cmu (0.745573)
               

               
               tra (0.738552)
               

               
               ill (0.702371)
               

               
               eje (0.593003)
               

               
               sin (0.524843)
               

               
               ova (0.516529)
               

               
               ret (0.514933)
               

               
               sug (0.509165)
               

               
               cki (0.495704)
               

               
               spc (0.453463)
               

               
               liv (0.438853)
               

               
               che (0.408942)
               

               
               fli (0.405762)
               

               
               jej (0.395687)
               

               
               col (0.390016)
               

               
               sag (0.36543)
               

               
               med (0.348756)
               

               
               mcp (0.341297)
               

               
               vin (0.332557)
               

               
               nje (0.33184)
               

               
               tbr (0.308356)
               

               
               lun (0.300978)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               fat (0.294855)
               

               
               ski (0.29347)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               nca (0.273748)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               nbm (0.198649)
               

               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

Expressed library(ies): 64 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (1.12597)
               

               
               ste (1.08167)
               

               
               lyg (0.931718)
               

               
               sme (0.91631)
               

               
               kid (0.908147)
               

               
               bla (0.87043)
               

               
               cty (0.832639)
               

               
               ldo (0.776021)
               

               
               cmu (0.745573)
               

               
               tra (0.738552)
               

               
               ill (0.702371)
               

               
               eje (0.593003)
               

               
               sin (0.524843)
               

               
               ova (0.516529)
               

               
               ret (0.514933)
               

               
               sug (0.509165)
               

               
               cki (0.495704)
               

               
               spc (0.453463)
               

               
               liv (0.438853)
               

               
               che (0.408942)
               

               
               fli (0.405762)
               

               
               jej (0.395687)
               

               
               col (0.390016)
               

               
               sag (0.36543)
               

               
               med (0.348756)
               

               
               mcp (0.341297)
               

               
               vin (0.332557)
               

               
               nje (0.33184)
               

               
               tbr (0.308356)
               

               
               lun (0.300978)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               fat (0.294855)
               

               
               ski (0.29347)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               nca (0.273748)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               nbm (0.198649)
               

               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

	90-570, gnl\|bosTau2\|chr5 (15530774-15531253)
	90-570, gnl\|Hg17\|chr2 (188515537-188516029)
	90-570, gnl\|Mm7\|chr7 (11738167-11737642)

	586-1975, gnl\|bosTau2\|chr5 (15531251-15532625)
	586-1975, gnl\|Hg17\|chr2 (188516027-188517430)

	886-1237, gnl\|bosTau2\|chr19 (48753702-48753348)
	886-1237, gnl\|Hg17\|chr13 (49644986-49645325)

	1466-1813, gnl\|bosTau2\|chr1 (22792600-22792939)
	1466-1813, gnl\|Hg17\|chr7 (132311172-132310839)

	csk (1.12597)
	ste (1.08167)
	lyg (0.931718)
	sme (0.91631)
	kid (0.908147)
	bla (0.87043)
	cty (0.832639)
	ldo (0.776021)
	cmu (0.745573)
	tra (0.738552)
	ill (0.702371)
	eje (0.593003)
	sin (0.524843)
	ova (0.516529)
	ret (0.514933)
	sug (0.509165)
	cki (0.495704)
	spc (0.453463)
	liv (0.438853)
	che (0.408942)
	fli (0.405762)
	jej (0.395687)
	col (0.390016)
	sag (0.36543)
	med (0.348756)
	mcp (0.341297)
	vin (0.332557)
	nje (0.33184)
	tbr (0.308356)
	lun (0.300978)
	isp (0.300752)
	bfe (0.299715)
	fat (0.294855)
	ski (0.29347)
	lin (0.291206)
	spl (0.286369)
	nca (0.273748)
	thg (0.253582)
	cbe (0.239234)
	pgl (0.236967)
	mgp (0.230681)
	ece (0.229305)
	jca (0.22792)
	nbm (0.198649)
	nep (0.183925)
	sto (0.179824)
	gul (0.177588)
	fbs (0.175346)
	duo (0.172801)
	cut (0.169924)
	fhi (0.169578)
	nco (0.161734)
	csp (0.161186)
	fco (0.157208)
	cag (0.151194)
	pty (0.142714)
	lnt (0.142308)
	cst (0.140036)
	ssp (0.13552)
	nmm (0.132802)
	ese (0.126502)
	eep (0.122564)
	eru (0.120048)
	ebs (0.118301)