Non-Coding RNA Search

Ss1.1-Spl1-SPL010003C07.5

Sequence:


               
               TGTGCACGCGGCCCATGGTGCTGTTATAGATCCCGTCGCACACGAACTCCAGCACCGAGC
TGGCTATGATGAGGATGGACATGAGAGTTAGGTTCTGCGTGAAGGCAGCACCTGCCCCAT
CTCGTAGAATCCAGTCAGTGAGCCGGCCTGTGAAGAACGGAATGGCCATCTCCCCAAGGC
TGGAGAGGACCACCAGGGTCAGAAGGAGCCAGAGGTGGCGGATCTCTGAGCCCAGGCAGC
CGAGAAGCCGGCTCACTGTCACTCCAGAGCCTCTGTGACTTCCTTGCACCCAAAGGCTGC
TAAGCTTATGCCACAGGGCGGCCGCGGGCAATGCCGCCGCATAGCTGAGGGCGAAGGCAT
CGAGGCGACTCCCCCAGTGCAGTAGCCGCGTGCTGTCAGCCGCTCCCGAGCCCAACTCTC
GGAACAAGGCAAGTCCCGGCAGAGCCAAGCCCAGAGCCGCCGCCAGCGGCTCCAAAGCTG
CCAGCCATCCCCGAAGTCCTGTGCTTTTCTCCCGGAAGCCAACCGTCGCCCTGAGGACGC
TGCGGGCCCCCAACCACAGCACAGCCCAACGGCTCAGGCCCACCACCCAGACCCGGAGCA
GCGGCAGCGCTGGGGGCAGCAGCAGGGAGGATATCCGGGGCAGCGCCGGCCGGAGCAGCA
CCCAGTCGGCGAGAAGCAGCAGCGCTGCCCCCAGCCAAGGGAGGGAAGCTCGGGAGACGC
AGAGACACCCGCAGGGAGCGGAGGACCCCGAGCTGGCCATTGGCCGTACGAGGTCGACCC
CCGGCCTGGGGCTCTCGCTATCCCTGCTGGGCTGGATTCTCTGGATGCTGTCGGAGTGGG
TGCCCGAGCAGGCCCGGACCCGCAGCGGGGAGGGTCCAGGGGCGGGCCGGGGCGGGGATC
TCGGAAAGTCCCGGGAACCGACCTGGACCGCCTCAGCGAGCTGGAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGCACGCGGCCCATGGTGCTGTTATAGATCCCGTCGCACACGAACTCCAGCACCGAGC
TGGCTATGATGAGGATGGACATGAGAGTTAGGTTCTGCGTGAAGGCAGCACCTGCCCCAT
CTCGTAGAATCCAGTCAGTGAGCCGGCCTGTGAAGAACGGAATGGCCATCTCCCCAAGGC
TGGAGAGGACCACCAGGGTCAGAAGGAGCCAGAGGTGGCGGATCTCTGAGCCCAGGCAGC
CGAGAAGCCGGCTCACTGTCACTCCAGAGCCTCTGTGACTTCCTTGCACCCAAAGGCTGC
TAAGCTTATGCCACAGGGCGGCCGCGGGCAATGCCGCCGCATAGCTGAGGGCGAAGGCAT
CGAGGCGACTCCCCCAGTGCAGTAGCCGCGTGCTGTCAGCCGCTCCCGAGCCCAACTCTC
GGAACAAGGCAAGTCCCGGCAGAGCCAAGCCCAGAGCCGCCGCCAGCGGCTCCAAAGCTG
CCAGCCATCCCCGAAGTCCTGTGCTTTTCTCCCGGAAGCCAACCGTCGCCCTGAGGACGC
TGCGGGCCCCCAACCACAGCACAGCCCAACGGCTCAGGCCCACCACCCAGACCCGGAGCA
GCGGCAGCGCTGGGGGCAGCAGCAGGGAGGATATCCGGGGCAGCGCCGGCCGGAGCAGCA
CCCAGTCGGCGAGAAGCAGCAGCGCTGCCCCCAGCCAAGGGAGGGAAGCTCGGGAGACGC
AGAGACACCCGCAGGGAGCGGAGGACCCCGAGCTGGCCATTGGCCGTACGAGGTCGACCC
CCGGCCTGGGGCTCTCGCTATCCCTGCTGGGCTGGATTCTCTGGATGCTGTCGGAGTGGG
TGCCCGAGCAGGCCCGGACCCGCAGCGGGGAGGGTCCAGGGGCGGGCCGGGGCGGGGATC
TCGGAAAGTCCCGGGAACCGACCTGGACCGCCTCAGCGAGCTGGAAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               O94774_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               O94774_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               809-921, - strand, RNAz p=0.986383

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               809-921, - strand, RNAz p=0.986383

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC014081, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC014081, -

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               52-175, gnl|bosTau2|chr23 (5534578-5534701)
               

               
               52-175, gnl|Hg17|chr6 (32928135-32928258)
               

               
               52-175, gnl|Mm7|chr17 (32269141-32269018)
               


               
               182-931, gnl|bosTau2|chr23 (5535137-5535872)
               

               
               182-931, gnl|Hg17|chr6 (32928801-32929548)
               

               
               182-931, gnl|Mm7|chr17 (32268316-32267662)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               52-175, gnl|bosTau2|chr23 (5534578-5534701)
               

               
               52-175, gnl|Hg17|chr6 (32928135-32928258)
               

               
               52-175, gnl|Mm7|chr17 (32269141-32269018)
               


               
               182-931, gnl|bosTau2|chr23 (5535137-5535872)
               

               
               182-931, gnl|Hg17|chr6 (32928801-32929548)
               

               
               182-931, gnl|Mm7|chr17 (32268316-32267662)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               clu (0.717875)
               

               
               col (0.195008)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.717875)
               

               
               col (0.195008)

	52-175, gnl\|bosTau2\|chr23 (5534578-5534701)
	52-175, gnl\|Hg17\|chr6 (32928135-32928258)
	52-175, gnl\|Mm7\|chr17 (32269141-32269018)

	182-931, gnl\|bosTau2\|chr23 (5535137-5535872)
	182-931, gnl\|Hg17\|chr6 (32928801-32929548)
	182-931, gnl\|Mm7\|chr17 (32268316-32267662)