Ss1.1-Spl1-SPL010003F07.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
CTGTCCTTCACTCCTCCATTGTCTGCCGCCACCACTACCGCCGCTGCCACCGTCGCTGCC GGAGTTGCCGCAGCCCCCAGCCTCGCGCGTCGCCGCTACCTCCTCGGACAGAAATTTTAT GAATAAGCATCAGAAGCCAGTGCTAACAGGCCAGCGGTTCAAAACTCGGAAAAGGGATGA AAAAGAGAAATTCGAACCCACAGTCTTCAGGGATACACTCGTCCAGGGGCTTAATGAAGC TGGTGATGACCTTGAAGCTGTAGCCAAGTTTCTGGACTCCACAGGCTCAAGATTAGATTA TCGTCGCTATGCAGACACACTCTTCGATATCCTGGTGGCTGGCAGTATGCTTGCCCCTGG AGGAACACGCATAGATGATGGTGACAAGACCAAGATGACCAACCACTGTGTGTTTTCAGC AAATGAAGATCATGAAACCATCCGAAACTATGCTCAGGTCTTCAATAAGCTCATCAGGAG ATACAAATATTTGGAAAAGGCATTTGAGGATGAAATGAAAAAGCTTCTCCTCTTCCTTAA AGCCTTTTCCGAAACAGAGCAGACAAAGTTGGCAATGCTATCGGGGATTCTGCTGGGCAA CGGCACCCTTCCTGCCACCATCCTCACCAGTCTTTTCACTGACAGCTTAGTCAAAGAAGG CATTGCAGCCTCATTTGCTGTCAAGCTTTTTAAAGCATGGATGGCAGAAAAAGATGCCAA CTCTGTTACCTCCTCTTTGAGAAAAGCCAACTTAGACAAGAGGCTGCTTGAACTCTTTCC AGTTAACAGGCAGAGTGTGGATCATTTTGCTAAATACTTCACTGACGCAGGTCTGAAGGA GCTTTCTGACTTCCTCAGAGTCCAGCAGTCCCTGGGCACCAGGAAGGAGCTGCAGAAGGA GCTCCAAGAGCGTCTTTCTCAGGAATGCCCCATCAAGGAGGTGGTGCTCTACGTTAAAGA AGAAATGAAGAGGAATGATCTTCCGGAGACAGCGGTGATTGGACTCCTATGGACCTGTAT CATGAACGCTGTGGAGTGGAACAAGAAGGAGGAACTTGTTGCCGAGCAGGCCCTCAAGCA CCTGAAGCAATACGCTCCACTCCTGGCTGTATTCAGCTCCCAAGGCCAGTCAGAGCTGAT CCTCCTCCAGAAGGTTCAAGAATACTGTTATGACAACATCCATTTTATGAAAGCCTTTCA GAAGATCGTGGTTCTCTTTTATAAAGCTGATGTGCTGAGTGAAGAAGCGATATTGAAATG GTACAAAGAAGCACATGTCGCCAAAGGCAAGAGTGTTTTTCTTGACCAGATGAAGAAATT CGTTGAATGGTTACAAAATGCAGAAGAAGAATCTGAATCGGAAGGTGAAGAAAATTAGGT GGTTCTAGAAGCACAATACCTAGGTTGCCACACAACACTCTTACTGGGAATGCTGAACCA TTTGAGAAGAGAAACTTGGCTTCTGTTTTCACAAAGGAGGAAAAAAAAATAGGCTAGGCT TCCCTTGTGCAAGAGGGAAATGGTTTTTGTTTTTGTTTTGTTTTTAAATGGAGCCCTGAG GCATCAGCTGTTTTACTTGGGACTCTACCTCTCACTCACTATCTGCTAACTTAAAGCCAT TCAACTGGGAGTCCAGTAGGTATCTGAAATTAAATACTCCAGAGACTCCTCTTTTTTAGC TGTATTTTTCAGGTACTGTGTGGTGAACGCCCCACTGGTGTCTATTACAGGGCCACTTTG GTAGTTGTGTATCTGCTCGTGTATGTGATTTGACAAACCAGTTTTTTAAAATAAATGGCT TTTTAAAAAAAAAAAAAAAAAAAA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
CTGTCCTTCACTCCTCCATTGTCTGCCGCCACCACTACCGCCGCTGCCACCGTCGCTGCC GGAGTTGCCGCAGCCCCCAGCCTCGCGCGTCGCCGCTACCTCCTCGGACAGAAATTTTAT GAATAAGCATCAGAAGCCAGTGCTAACAGGCCAGCGGTTCAAAACTCGGAAAAGGGATGA AAAAGAGAAATTCGAACCCACAGTCTTCAGGGATACACTCGTCCAGGGGCTTAATGAAGC TGGTGATGACCTTGAAGCTGTAGCCAAGTTTCTGGACTCCACAGGCTCAAGATTAGATTA TCGTCGCTATGCAGACACACTCTTCGATATCCTGGTGGCTGGCAGTATGCTTGCCCCTGG AGGAACACGCATAGATGATGGTGACAAGACCAAGATGACCAACCACTGTGTGTTTTCAGC AAATGAAGATCATGAAACCATCCGAAACTATGCTCAGGTCTTCAATAAGCTCATCAGGAG ATACAAATATTTGGAAAAGGCATTTGAGGATGAAATGAAAAAGCTTCTCCTCTTCCTTAA AGCCTTTTCCGAAACAGAGCAGACAAAGTTGGCAATGCTATCGGGGATTCTGCTGGGCAA CGGCACCCTTCCTGCCACCATCCTCACCAGTCTTTTCACTGACAGCTTAGTCAAAGAAGG CATTGCAGCCTCATTTGCTGTCAAGCTTTTTAAAGCATGGATGGCAGAAAAAGATGCCAA CTCTGTTACCTCCTCTTTGAGAAAAGCCAACTTAGACAAGAGGCTGCTTGAACTCTTTCC AGTTAACAGGCAGAGTGTGGATCATTTTGCTAAATACTTCACTGACGCAGGTCTGAAGGA GCTTTCTGACTTCCTCAGAGTCCAGCAGTCCCTGGGCACCAGGAAGGAGCTGCAGAAGGA GCTCCAAGAGCGTCTTTCTCAGGAATGCCCCATCAAGGAGGTGGTGCTCTACGTTAAAGA AGAAATGAAGAGGAATGATCTTCCGGAGACAGCGGTGATTGGACTCCTATGGACCTGTAT CATGAACGCTGTGGAGTGGAACAAGAAGGAGGAACTTGTTGCCGAGCAGGCCCTCAAGCA CCTGAAGCAATACGCTCCACTCCTGGCTGTATTCAGCTCCCAAGGCCAGTCAGAGCTGAT CCTCCTCCAGAAGGTTCAAGAATACTGTTATGACAACATCCATTTTATGAAAGCCTTTCA GAAGATCGTGGTTCTCTTTTATAAAGCTGATGTGCTGAGTGAAGAAGCGATATTGAAATG GTACAAAGAAGCACATGTCGCCAAAGGCAAGAGTGTTTTTCTTGACCAGATGAAGAAATT CGTTGAATGGTTACAAAATGCAGAAGAAGAATCTGAATCGGAAGGTGAAGAAAATTAGGT GGTTCTAGAAGCACAATACCTAGGTTGCCACACAACACTCTTACTGGGAATGCTGAACCA TTTGAGAAGAGAAACTTGGCTTCTGTTTTCACAAAGGAGGAAAAAAAAATAGGCTAGGCT TCCCTTGTGCAAGAGGGAAATGGTTTTTGTTTTTGTTTTGTTTTTAAATGGAGCCCTGAG GCATCAGCTGTTTTACTTGGGACTCTACCTCTCACTCACTATCTGCTAACTTAAAGCCAT TCAACTGGGAGTCCAGTAGGTATCTGAAATTAAATACTCCAGAGACTCCTCTTTTTTAGC TGTATTTTTCAGGTACTGTGTGGTGAACGCCCCACTGGTGTCTATTACAGGGCCACTTTG GTAGTTGTGTATCTGCTCGTGTATGTGATTTGACAAACCAGTTTTTTAAAATAAATGGCT TTTTAAAAAAAAAAAAAAAAAAAA |
Coded protein: 1 entry(ies) | More info |
Aligned organism(s): 91 entry(ies) | More info |
Aligned organism(s): 91 entry(ies) | Help | Less info |
1-111, gnl|bosTau2|chr4 (8041305-8041415) | |
1-111, gnl|canFam2|chr14 (34103185-34103522) | |
1-111, gnl|dasNov1|scaffold_7877 (85737-85417) | |
1-111, gnl|echTel1|scaffold_214668 (5810-5496) | |
1-111, gnl|galGal2|chr2 (27772831-27773048) | |
1-111, gnl|hg17|chr7 (16458923-16459254) | |
1-111, gnl|Hg17|chr7 (16459037-16459153) | |
1-111, gnl|mm7|chr12 (33996507-33996185) | |
1-111, gnl|Mm7|chr12 (33996390-33996283) | |
1-111, gnl|monDom2|scaffold_57 (9829705-9829321) | |
1-111, gnl|panTro1|chr6 (17343561-17343892) | |
1-111, gnl|rheMac2|chr3 (109466859-109466534) | |
1-111, gnl|rn3|chr6 (54884534-54884211) | |
176-353, gnl|bosTau2|chr4 (8069446-8069623) | |
176-353, gnl|canFam2|chr14 (34135322-34135516) | |
176-353, gnl|danRer3|chr19 (45446664-45446856) | |
176-353, gnl|dasNov1|scaffold_13227 (9948-9774) | |
176-353, gnl|echTel1|scaffold_284229 (31971-32159) | |
176-353, gnl|fr1|chrUn (161959552-161959734) | |
176-353, gnl|galGal2|chr2 (27799635-27799829) | |
176-353, gnl|hg17|chr7 (16487275-16487469) | |
176-353, gnl|Hg17|chr7 (16487276-16487453) | |
176-353, gnl|loxAfr1|scaffold_9362 (61980-62160) | |
176-353, gnl|mm7|chr12 (33969787-33969593) | |
176-353, gnl|Mm7|chr12 (33969784-33969607) | |
176-353, gnl|monDom2|scaffold_57 (9798992-9798802) | |
176-353, gnl|oryCun1|scaffold_179348 (122615-122809) | |
176-353, gnl|panTro1|chr6 (17371742-17371936) | |
176-353, gnl|rheMac2|chr3 (109438980-109438786) | |
176-353, gnl|rn3|chr6 (54858788-54858594) | |
176-353, gnl|tetNig1|chr3 (356680-356863) | |
176-353, gnl|xenTro1|scaffold_23 (2468118-2467924) | |
522-679, gnl|bosTau2|chr4 (8081094-8081250) | |
522-679, gnl|canFam2|chr14 (34145665-34145822) | |
522-679, gnl|danRer3|chr19 (45456146-45456287) | |
522-679, gnl|dasNov1|scaffold_7877 (46309-46160) | |
522-679, gnl|echTel1|scaffold_277931 (89710-89536) | |
522-679, gnl|fr1|chrUn (161960563-161960712) | |
522-679, gnl|galGal2|chr2 (27809567-27809715) | |
522-679, gnl|hg17|chr7 (16498750-16498911) | |
522-679, gnl|Hg17|chr7 (16498768-16498926) | |
522-679, gnl|loxAfr1|scaffold_9362 (75753-75902) | |
522-679, gnl|mm7|chr12 (33958752-33958598) | |
522-679, gnl|Mm7|chr12 (33958739-33958590) | |
522-679, gnl|monDom2|scaffold_57 (9781429-9781259) | |
522-679, gnl|oryCun1|scaffold_179348 (137752-137913) | |
522-679, gnl|panTro1|chr6 (17383474-17383634) | |
522-679, gnl|rheMac2|chr3 (109427168-109427010) | |
522-679, gnl|rn3|chr6 (54846368-54846214) | |
522-679, gnl|tetNig1|chr3 (357340-357487) | |
522-679, gnl|xenTro1|scaffold_23 (2461210-2461053) | |
770-943, gnl|bosTau2|chr4 (8089832-8090005) | |
770-943, gnl|canFam2|chr14 (34153871-34154063) | |
770-943, gnl|danRer3|chr19 (45459188-45459374) | |
770-943, gnl|dasNov1|scaffold_7877 (37424-37232) | |
770-943, gnl|echTel1|scaffold_235865 (1055-1242) | |
770-943, gnl|fr1|chrUn (161961481-161961678) | |
770-943, gnl|galGal2|chr2 (27814657-27814844) | |
770-943, gnl|hg17|chr7 (16507685-16507877) | |
770-943, gnl|Hg17|chr7 (16507699-16507872) | |
770-943, gnl|mm7|chr12 (33949506-33949314) | |
770-943, gnl|Mm7|chr12 (33949490-33949317) | |
770-943, gnl|monDom2|scaffold_57 (9774154-9773964) | |
770-943, gnl|oryCun1|scaffold_179348 (146655-146847) | |
770-943, gnl|panTro1|chr6 (17392591-17392783) | |
770-943, gnl|rheMac2|chr3 (109417982-109417790) | |
770-943, gnl|rn3|chr6 (54838122-54837930) | |
770-943, gnl|tetNig1|chr3 (357754-357944) | |
770-943, gnl|xenTro1|scaffold_23 (2457372-2457182) | |
1086-1233, gnl|bosTau2|chr4 (8093616-8093762) | |
1086-1233, gnl|canFam2|chr14 (34157779-34157961) | |
1086-1233, gnl|danRer3|chr19 (45462761-45462923) | |
1086-1233, gnl|dasNov1|scaffold_7877 (34995-34804) | |
1086-1233, gnl|echTel1|scaffold_235865 (4430-4613) | |
1086-1233, gnl|fr1|chrUn (161962534-161962707) | |
1086-1233, gnl|galGal2|chr2 (27817703-27817883) | |
1086-1233, gnl|hg17|chr7 (16510890-16511072) | |
1086-1233, gnl|Hg17|chr7 (16510911-16511057) | |
1086-1233, gnl|loxAfr1|scaffold_216620 (371-561) | |
1086-1233, gnl|mm7|chr12 (33944037-33943859) | |
1086-1233, gnl|Mm7|chr12 (33944017-33943870) | |
1086-1233, gnl|monDom2|scaffold_57 (9770059-9769887) | |
1086-1233, gnl|oryCun1|scaffold_179348 (149371-149543) | |
1086-1233, gnl|panTro1|chr6 (17395824-17396007) | |
1086-1233, gnl|rheMac2|chr3 (109414740-109414558) | |
1086-1233, gnl|rn3|chr6 (54834347-54834169) | |
1086-1233, gnl|tetNig1|chr3 (358203-358368) | |
1086-1233, gnl|xenTro1|scaffold_23 (2454916-2454749) | |
1348-1809, gnl|bosTau2|chr4 (8103770-8104237) | |
1348-1809, gnl|Hg17|chr7 (16518923-16519382) | |
1348-1809, gnl|Mm7|chr12 (33931926-33931456) |
Aligned organism(s): 91 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
1-111, gnl|bosTau2|chr4 (8041305-8041415) | |
1-111, gnl|canFam2|chr14 (34103185-34103522) | |
1-111, gnl|dasNov1|scaffold_7877 (85737-85417) | |
1-111, gnl|echTel1|scaffold_214668 (5810-5496) | |
1-111, gnl|galGal2|chr2 (27772831-27773048) | |
1-111, gnl|hg17|chr7 (16458923-16459254) | |
1-111, gnl|Hg17|chr7 (16459037-16459153) | |
1-111, gnl|mm7|chr12 (33996507-33996185) | |
1-111, gnl|Mm7|chr12 (33996390-33996283) | |
1-111, gnl|monDom2|scaffold_57 (9829705-9829321) | |
1-111, gnl|panTro1|chr6 (17343561-17343892) | |
1-111, gnl|rheMac2|chr3 (109466859-109466534) | |
1-111, gnl|rn3|chr6 (54884534-54884211) | |
176-353, gnl|bosTau2|chr4 (8069446-8069623) | |
176-353, gnl|canFam2|chr14 (34135322-34135516) | |
176-353, gnl|danRer3|chr19 (45446664-45446856) | |
176-353, gnl|dasNov1|scaffold_13227 (9948-9774) | |
176-353, gnl|echTel1|scaffold_284229 (31971-32159) | |
176-353, gnl|fr1|chrUn (161959552-161959734) | |
176-353, gnl|galGal2|chr2 (27799635-27799829) | |
176-353, gnl|hg17|chr7 (16487275-16487469) | |
176-353, gnl|Hg17|chr7 (16487276-16487453) | |
176-353, gnl|loxAfr1|scaffold_9362 (61980-62160) | |
176-353, gnl|mm7|chr12 (33969787-33969593) | |
176-353, gnl|Mm7|chr12 (33969784-33969607) | |
176-353, gnl|monDom2|scaffold_57 (9798992-9798802) | |
176-353, gnl|oryCun1|scaffold_179348 (122615-122809) | |
176-353, gnl|panTro1|chr6 (17371742-17371936) | |
176-353, gnl|rheMac2|chr3 (109438980-109438786) | |
176-353, gnl|rn3|chr6 (54858788-54858594) | |
176-353, gnl|tetNig1|chr3 (356680-356863) | |
176-353, gnl|xenTro1|scaffold_23 (2468118-2467924) | |
522-679, gnl|bosTau2|chr4 (8081094-8081250) | |
522-679, gnl|canFam2|chr14 (34145665-34145822) | |
522-679, gnl|danRer3|chr19 (45456146-45456287) | |
522-679, gnl|dasNov1|scaffold_7877 (46309-46160) | |
522-679, gnl|echTel1|scaffold_277931 (89710-89536) | |
522-679, gnl|fr1|chrUn (161960563-161960712) | |
522-679, gnl|galGal2|chr2 (27809567-27809715) | |
522-679, gnl|hg17|chr7 (16498750-16498911) | |
522-679, gnl|Hg17|chr7 (16498768-16498926) | |
522-679, gnl|loxAfr1|scaffold_9362 (75753-75902) | |
522-679, gnl|mm7|chr12 (33958752-33958598) | |
522-679, gnl|Mm7|chr12 (33958739-33958590) | |
522-679, gnl|monDom2|scaffold_57 (9781429-9781259) | |
522-679, gnl|oryCun1|scaffold_179348 (137752-137913) | |
522-679, gnl|panTro1|chr6 (17383474-17383634) | |
522-679, gnl|rheMac2|chr3 (109427168-109427010) | |
522-679, gnl|rn3|chr6 (54846368-54846214) | |
522-679, gnl|tetNig1|chr3 (357340-357487) | |
522-679, gnl|xenTro1|scaffold_23 (2461210-2461053) | |
770-943, gnl|bosTau2|chr4 (8089832-8090005) | |
770-943, gnl|canFam2|chr14 (34153871-34154063) | |
770-943, gnl|danRer3|chr19 (45459188-45459374) | |
770-943, gnl|dasNov1|scaffold_7877 (37424-37232) | |
770-943, gnl|echTel1|scaffold_235865 (1055-1242) | |
770-943, gnl|fr1|chrUn (161961481-161961678) | |
770-943, gnl|galGal2|chr2 (27814657-27814844) | |
770-943, gnl|hg17|chr7 (16507685-16507877) | |
770-943, gnl|Hg17|chr7 (16507699-16507872) | |
770-943, gnl|mm7|chr12 (33949506-33949314) | |
770-943, gnl|Mm7|chr12 (33949490-33949317) | |
770-943, gnl|monDom2|scaffold_57 (9774154-9773964) | |
770-943, gnl|oryCun1|scaffold_179348 (146655-146847) | |
770-943, gnl|panTro1|chr6 (17392591-17392783) | |
770-943, gnl|rheMac2|chr3 (109417982-109417790) | |
770-943, gnl|rn3|chr6 (54838122-54837930) | |
770-943, gnl|tetNig1|chr3 (357754-357944) | |
770-943, gnl|xenTro1|scaffold_23 (2457372-2457182) | |
1086-1233, gnl|bosTau2|chr4 (8093616-8093762) | |
1086-1233, gnl|canFam2|chr14 (34157779-34157961) | |
1086-1233, gnl|danRer3|chr19 (45462761-45462923) | |
1086-1233, gnl|dasNov1|scaffold_7877 (34995-34804) | |
1086-1233, gnl|echTel1|scaffold_235865 (4430-4613) | |
1086-1233, gnl|fr1|chrUn (161962534-161962707) | |
1086-1233, gnl|galGal2|chr2 (27817703-27817883) | |
1086-1233, gnl|hg17|chr7 (16510890-16511072) | |
1086-1233, gnl|Hg17|chr7 (16510911-16511057) | |
1086-1233, gnl|loxAfr1|scaffold_216620 (371-561) | |
1086-1233, gnl|mm7|chr12 (33944037-33943859) | |
1086-1233, gnl|Mm7|chr12 (33944017-33943870) | |
1086-1233, gnl|monDom2|scaffold_57 (9770059-9769887) | |
1086-1233, gnl|oryCun1|scaffold_179348 (149371-149543) | |
1086-1233, gnl|panTro1|chr6 (17395824-17396007) | |
1086-1233, gnl|rheMac2|chr3 (109414740-109414558) | |
1086-1233, gnl|rn3|chr6 (54834347-54834169) | |
1086-1233, gnl|tetNig1|chr3 (358203-358368) | |
1086-1233, gnl|xenTro1|scaffold_23 (2454916-2454749) | |
1348-1809, gnl|bosTau2|chr4 (8103770-8104237) | |
1348-1809, gnl|Hg17|chr7 (16518923-16519382) | |
1348-1809, gnl|Mm7|chr12 (33931926-33931456) |
Expressed library(ies): 41 entry(ies) | More info |
Expressed library(ies): 41 entry(ies) | Help | Less info |
ssp (0.813118) | |
tbr (0.770891) | |
vin (0.665115) | |
fty (0.527519) | |
ldo (0.485013) | |
isp (0.451128) | |
hea (0.408998) | |
ste (0.405625) | |
pgl (0.35545) | |
med (0.348756) | |
cbl (0.344392) | |
sme (0.305437) | |
fat (0.294855) | |
lin (0.291206) | |
fce (0.271592) | |
pla (0.267344) | |
thg (0.253582) | |
tra (0.246184) | |
ebs (0.236602) | |
ecc (0.23007) | |
ece (0.229305) | |
nbm (0.198649) | |
fcc (0.197785) | |
col (0.195008) | |
nlu (0.191681) | |
rec (0.17307) | |
eye (0.170503) | |
csp (0.161186) | |
csk (0.140746) | |
hlv (0.139256) | |
nca (0.136874) | |
nmm (0.132802) | |
ute (0.132784) | |
ese (0.126502) | |
bla (0.124347) | |
cly (0.120642) | |
jca (0.11396) | |
spc (0.113366) | |
cty (0.10408) | |
jej (0.0989218) | |
eje (0.0988338) |
Expressed library(ies): 41 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
ssp (0.813118) | |
tbr (0.770891) | |
vin (0.665115) | |
fty (0.527519) | |
ldo (0.485013) | |
isp (0.451128) | |
hea (0.408998) | |
ste (0.405625) | |
pgl (0.35545) | |
med (0.348756) | |
cbl (0.344392) | |
sme (0.305437) | |
fat (0.294855) | |
lin (0.291206) | |
fce (0.271592) | |
pla (0.267344) | |
thg (0.253582) | |
tra (0.246184) | |
ebs (0.236602) | |
ecc (0.23007) | |
ece (0.229305) | |
nbm (0.198649) | |
fcc (0.197785) | |
col (0.195008) | |
nlu (0.191681) | |
rec (0.17307) | |
eye (0.170503) | |
csp (0.161186) | |
csk (0.140746) | |
hlv (0.139256) | |
nca (0.136874) | |
nmm (0.132802) | |
ute (0.132784) | |
ese (0.126502) | |
bla (0.124347) | |
cly (0.120642) | |
jca (0.11396) | |
spc (0.113366) | |
cty (0.10408) | |
jej (0.0989218) | |
eje (0.0988338) |