Non-Coding RNA Search

Ss1.1-Spl1-SPL010003H04.5

Sequence:


               
               TTGGAGGGTCGGCAGTGATCACACGTCGGCTGCTGGAAAGAACTGGATTCTCGTTTCAGG
CTACCATCAAAAAAGCTAAGTTTGCTGTATAGTAAGGATCAGAAGATCTGATCCTGATTG
CAGAACATTGCTGATTACAGAATCTTGGGTTGTGTCTCCCACCTCATCTTTCCCTACCAT
CCCAGAAGATCTATAAGGTTCCATCTGGGAAAACACTAGAAGTTCTTGGAAGGGAAAGAA
GGAAGAGGATTACTGGTTGGAATAAAAACAGGGTTGAATGAGTTCCAGAAAGCAGGGTTC
TCAAACTCGTGGACAACAATCTGCAGAAGAAGACAACTTCAAAAAACCAACTAGAAGCAA
TATGCAGAGAAGTAAGATGAGAGGAGCCTCCTCAGGAAAGAAGACCGCTGGTCCACAGCA
GAAGAATCTGGAAGCAGCACTCCCCGGCAGGTGGGGGGGTCGCTCTGCAGAGACCCCCCC
TTCGGGGTCCGTGAGGAAGACCAGAAAGAACAAACAGAAGACCCCTGGAAATGGAGATGG
TGGCAGTACCAGCGAAGCACCTCAGCCACCTCGGAAGAAAAGGGCCCGGGCTGACCCCAC
TGTGGAAAGTGAGGAGGCATTTAAGAATAGAATGGAAGTGAAAGTGAAGATTCCTGAAGA
ATTAAAACCATGGCTAGTTGAGGACTGGGACTTAGTTACCAGGCAGAAGCAGCTCTTTCA
ACTCCCTGCTAAGAAAAATGTAGATGCCATTCTGGAAGAGTACGCAAATTGCAAGAAATC
ACAGGGAAATGTTGATAATAAGGAGTATGCGGTTAATGAAGTTGTGGCAGGAATAAAAGA
GTATTTCAATGTGATGTTGGGCACTCAGCTGCTCTATAAATTTGAGAGGCCCCAGTATGC
CGAAATCCTCTTGGCTCACCCTGATGCGCCCATGTCCCAGGTTTATGGGGCACCACACCT
ACTGAGATTATTTGTGAGAATTGGAGCAATGTTGGCATATACGCCCCTTGATGAGAAGAG
CCTTGCATTATTGTTGGGCTATCTGCATGATTTCCTAAAATACCTGGCAAAGAATGCTGC
GTCTCTGTTTACTGCCAGTGATTATAAAGTGGCTTCTGCTGAGTACCACCGCAAAGCCCT
GTGAGGGTCTCCTGACCGCTCGCTGTTATGTCTGGTATCTGTAAACACTCTTTTTGTTCT
TAGTCTTTTTCTTGTATAATTGATGTTCTTTAAAATTGTTCATGTATAACAGGGCTTATG
TTTCAGTTTGTTTTCTGTTTTATTCTAAACAGAAAATAAAAGGAGTGCAAGCTCCTTTTC
TCATTTCAAAGTTGCTACCAGTGTACACAGTAATTAGACAAAGAAGAAACATTCAGTAGA
ACATTTTATTGCCTAGTTGACAACATTGCTTGAATGCTGGTGGTTCTATCCCTTTGACAC
TACACAATTTTCTAATATGTGTTAATGCTATGTGGAAAAATGCCCTGATTCCTAGTGCCA
AAGGTTCAACTTAATGTATATACCTGAAAACCCATGCATTTGTGCTCTTTTTTTTTTATG
GTGCTTGAAGTAAAACAGCCCATCCTCTGCAAGTCCATCTCTGTTGTTCCTTAGGCATTC
TATCTTTGCTCAAATTGTTGAAGGATGGTGGTTTGTTTCATGGTTTTTGTATTTGAGTCT
AATGCACGTTCTAACATGATAGGGGCAATGCATTATTGTGTAGCCACGGTTTTCTGGAGA
AGTTGATATTTTAGGAATTGTATTTCAGATCTTAAATAAAATTTGTTTCTAAATTTCAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGCGTTTTAAAATTTCCCT
GGGGGGGGCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGAGGGTCGGCAGTGATCACACGTCGGCTGCTGGAAAGAACTGGATTCTCGTTTCAGG
CTACCATCAAAAAAGCTAAGTTTGCTGTATAGTAAGGATCAGAAGATCTGATCCTGATTG
CAGAACATTGCTGATTACAGAATCTTGGGTTGTGTCTCCCACCTCATCTTTCCCTACCAT
CCCAGAAGATCTATAAGGTTCCATCTGGGAAAACACTAGAAGTTCTTGGAAGGGAAAGAA
GGAAGAGGATTACTGGTTGGAATAAAAACAGGGTTGAATGAGTTCCAGAAAGCAGGGTTC
TCAAACTCGTGGACAACAATCTGCAGAAGAAGACAACTTCAAAAAACCAACTAGAAGCAA
TATGCAGAGAAGTAAGATGAGAGGAGCCTCCTCAGGAAAGAAGACCGCTGGTCCACAGCA
GAAGAATCTGGAAGCAGCACTCCCCGGCAGGTGGGGGGGTCGCTCTGCAGAGACCCCCCC
TTCGGGGTCCGTGAGGAAGACCAGAAAGAACAAACAGAAGACCCCTGGAAATGGAGATGG
TGGCAGTACCAGCGAAGCACCTCAGCCACCTCGGAAGAAAAGGGCCCGGGCTGACCCCAC
TGTGGAAAGTGAGGAGGCATTTAAGAATAGAATGGAAGTGAAAGTGAAGATTCCTGAAGA
ATTAAAACCATGGCTAGTTGAGGACTGGGACTTAGTTACCAGGCAGAAGCAGCTCTTTCA
ACTCCCTGCTAAGAAAAATGTAGATGCCATTCTGGAAGAGTACGCAAATTGCAAGAAATC
ACAGGGAAATGTTGATAATAAGGAGTATGCGGTTAATGAAGTTGTGGCAGGAATAAAAGA
GTATTTCAATGTGATGTTGGGCACTCAGCTGCTCTATAAATTTGAGAGGCCCCAGTATGC
CGAAATCCTCTTGGCTCACCCTGATGCGCCCATGTCCCAGGTTTATGGGGCACCACACCT
ACTGAGATTATTTGTGAGAATTGGAGCAATGTTGGCATATACGCCCCTTGATGAGAAGAG
CCTTGCATTATTGTTGGGCTATCTGCATGATTTCCTAAAATACCTGGCAAAGAATGCTGC
GTCTCTGTTTACTGCCAGTGATTATAAAGTGGCTTCTGCTGAGTACCACCGCAAAGCCCT
GTGAGGGTCTCCTGACCGCTCGCTGTTATGTCTGGTATCTGTAAACACTCTTTTTGTTCT
TAGTCTTTTTCTTGTATAATTGATGTTCTTTAAAATTGTTCATGTATAACAGGGCTTATG
TTTCAGTTTGTTTTCTGTTTTATTCTAAACAGAAAATAAAAGGAGTGCAAGCTCCTTTTC
TCATTTCAAAGTTGCTACCAGTGTACACAGTAATTAGACAAAGAAGAAACATTCAGTAGA
ACATTTTATTGCCTAGTTGACAACATTGCTTGAATGCTGGTGGTTCTATCCCTTTGACAC
TACACAATTTTCTAATATGTGTTAATGCTATGTGGAAAAATGCCCTGATTCCTAGTGCCA
AAGGTTCAACTTAATGTATATACCTGAAAACCCATGCATTTGTGCTCTTTTTTTTTTATG
GTGCTTGAAGTAAAACAGCCCATCCTCTGCAAGTCCATCTCTGTTGTTCCTTAGGCATTC
TATCTTTGCTCAAATTGTTGAAGGATGGTGGTTTGTTTCATGGTTTTTGTATTTGAGTCT
AATGCACGTTCTAACATGATAGGGGCAATGCATTATTGTGTAGCCACGGTTTTCTGGAGA
AGTTGATATTTTAGGAATTGTATTTCAGATCTTAAATAAAATTTGTTTCTAAATTTCAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGCGTTTTAAAATTTCCCT
GGGGGGGGCCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57112289|ref|XP_538122.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57112289|ref|XP_538122.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               20-127, + strand, RNAz p=0.762809
               

               
               1075-1193, - strand, RNAz p=0.871875

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               20-127, + strand, RNAz p=0.762809
               

               
               1075-1193, - strand, RNAz p=0.871875

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_012286, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_012286, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-127, gnl|bosTau2|chr15 (39308725-39308599)
               

               
               1-127, gnl|Hg17|chrX (102747762-102746267)
               


               
               756-1816, gnl|bosTau2|chr19 (7424433-7423381)
               

               
               756-1816, gnl|Hg17|chrX (102737622-102736567)
               

               
               756-1816, gnl|Mm7|chr19 (61090101-61091159)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-127, gnl|bosTau2|chr15 (39308725-39308599)
               

               
               1-127, gnl|Hg17|chrX (102747762-102746267)
               


               
               756-1816, gnl|bosTau2|chr19 (7424433-7423381)
               

               
               756-1816, gnl|Hg17|chrX (102737622-102736567)
               

               
               756-1816, gnl|Mm7|chr19 (61090101-61091159)

Expressed library(ies): 61 entry(ies)

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Expressed library(ies): 61 entry(ies)

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               cbl (1.37757)
               

               
               kid (1.16762)
               

               
               ova (1.16219)
               

               
               cty (1.0408)
               

               
               lin (0.873617)
               

               
               sug (0.763747)
               

               
               lun (0.752445)
               

               
               fhi (0.678311)
               

               
               ste (0.676041)
               

               
               sme (0.610874)
               

               
               liv (0.585137)
               

               
               nlu (0.575043)
               

               
               spl (0.572738)
               

               
               cmu (0.55918)
               

               
               ret (0.514933)
               

               
               thg (0.507164)
               

               
               fco (0.471624)
               

               
               tbr (0.462535)
               

               
               ece (0.45861)
               

               
               hea (0.408998)
               

               
               lyg (0.399308)
               

               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               pgl (0.35545)
               

               
               sin (0.349895)
               

               
               eye (0.341006)
               

               
               spc (0.340097)
               

               
               vin (0.332557)
               

               
               bfe (0.299715)
               

               
               fat (0.294855)
               

               
               ssp (0.271039)
               

               
               tra (0.246184)
               

               
               eru (0.240096)
               

               
               ebs (0.236602)
               

               
               mgp (0.230681)
               

               
               jca (0.22792)
               

               
               fcc (0.197785)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 61 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (1.37757)
               

               
               kid (1.16762)
               

               
               ova (1.16219)
               

               
               cty (1.0408)
               

               
               lin (0.873617)
               

               
               sug (0.763747)
               

               
               lun (0.752445)
               

               
               fhi (0.678311)
               

               
               ste (0.676041)
               

               
               sme (0.610874)
               

               
               liv (0.585137)
               

               
               nlu (0.575043)
               

               
               spl (0.572738)
               

               
               cmu (0.55918)
               

               
               ret (0.514933)
               

               
               thg (0.507164)
               

               
               fco (0.471624)
               

               
               tbr (0.462535)
               

               
               ece (0.45861)
               

               
               hea (0.408998)
               

               
               lyg (0.399308)
               

               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               pgl (0.35545)
               

               
               sin (0.349895)
               

               
               eye (0.341006)
               

               
               spc (0.340097)
               

               
               vin (0.332557)
               

               
               bfe (0.299715)
               

               
               fat (0.294855)
               

               
               ssp (0.271039)
               

               
               tra (0.246184)
               

               
               eru (0.240096)
               

               
               ebs (0.236602)
               

               
               mgp (0.230681)
               

               
               jca (0.22792)
               

               
               fcc (0.197785)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	20-127, + strand, RNAz p=0.762809
	1075-1193, - strand, RNAz p=0.871875

	1-127, gnl\|bosTau2\|chr15 (39308725-39308599)
	1-127, gnl\|Hg17\|chrX (102747762-102746267)

	756-1816, gnl\|bosTau2\|chr19 (7424433-7423381)
	756-1816, gnl\|Hg17\|chrX (102737622-102736567)
	756-1816, gnl\|Mm7\|chr19 (61090101-61091159)

	cbl (1.37757)
	kid (1.16762)
	ova (1.16219)
	cty (1.0408)
	lin (0.873617)
	sug (0.763747)
	lun (0.752445)
	fhi (0.678311)
	ste (0.676041)
	sme (0.610874)
	liv (0.585137)
	nlu (0.575043)
	spl (0.572738)
	cmu (0.55918)
	ret (0.514933)
	thg (0.507164)
	fco (0.471624)
	tbr (0.462535)
	ece (0.45861)
	hea (0.408998)
	lyg (0.399308)
	aor (0.390549)
	elu (0.385356)
	pgl (0.35545)
	sin (0.349895)
	eye (0.341006)
	spc (0.340097)
	vin (0.332557)
	bfe (0.299715)
	fat (0.294855)
	ssp (0.271039)
	tra (0.246184)
	eru (0.240096)
	ebs (0.236602)
	mgp (0.230681)
	jca (0.22792)
	fcc (0.197785)
	ill (0.175593)
	ton (0.1755)
	rec (0.17307)
	duo (0.172801)
	cut (0.169924)
	cki (0.165235)
	nco (0.161734)
	mga (0.160205)
	eli (0.151814)
	cag (0.151194)
	hyp (0.142837)
	pty (0.142714)
	cst (0.140036)
	che (0.136314)
	pla (0.133672)
	nmm (0.132802)
	ute (0.132784)
	bla (0.124347)
	eep (0.122564)
	med (0.116252)
	ecc (0.115035)
	nbm (0.0993246)
	jej (0.0989218)
	eje (0.0988338)