Non-Coding RNA Search

Ss1.1-Spl1-SPL010004A08.5

Sequence:


               
               AAGCGCTTCTTCGAGACTGCCGGCTGGTGCGGCTCCACGCCGGCGGCGGAGGGCAGCGCG
GGCCAGCAGCGGCTGCCTGAGCCCGGAGGCCGGCCGCGCTCAGCCGTGCAGGGCCGGTGC
CCGGTGCTGGCCCGCGCCCCGCCGCCTATCGCGCCATCGTTGCTGGAGCAGGAGGTGCGC
GAGGCGAATGAGCGCGAGCGGGAGCTGCAGCGCCAGCGGCTCAGTGTCTACGGCACCGCC
GAGTTCAAGGAGCCCGCGCCCAGCCTCACCGAGAGCAGGGGCGACGGAAAGCTGGCGGTG
ATCTGGCCTCCCCGCAGAAAGGCTTCGGAGAACGGTCTGGAGCAGGAGGAGCGGAAGCCT
TGAGGTTCGAACAGGCTGTGATCCCCGGACAAAAGTAACATGCTCATCAGAGGACCGAGG
CAGGGGCGCCCAGGAGTGCCCTCCCGATCGTCAGGAAGCCTGGAGAGCTGCCAGAGGTCT
GCGCCAGGGAAGATGAAATCGATCAGCCTACCCATCCTTGAACCTGACTTTGTAAAATTG
ACCTGTATCTTCTATAAAACTGTTAGGCTCGGTTGGGAAACACCACCGCCATAATCCCCG
CCAGGAAAACTGTTCAGCCCTTATCCGTCTAATTGGAAACGGAACTAGCCTCTCCTTCCT
TGACTGTTAGAGGACCGGGGTCACCTCCCCCGCCGCCCCCCTCCCCAATAAAGCCCTTCT
CTCTGGGCAAAAAAAAAAAAAAAATTCCGAGTCCTCTTCGTCTGGGGTGAGGCGGGAGCG
CATCGGAGGAAGGCCTGAAAAAGCTGCTACTGGCGCCGGCCGGAATGCGGAATGTCCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCGCTTCTTCGAGACTGCCGGCTGGTGCGGCTCCACGCCGGCGGCGGAGGGCAGCGCG
GGCCAGCAGCGGCTGCCTGAGCCCGGAGGCCGGCCGCGCTCAGCCGTGCAGGGCCGGTGC
CCGGTGCTGGCCCGCGCCCCGCCGCCTATCGCGCCATCGTTGCTGGAGCAGGAGGTGCGC
GAGGCGAATGAGCGCGAGCGGGAGCTGCAGCGCCAGCGGCTCAGTGTCTACGGCACCGCC
GAGTTCAAGGAGCCCGCGCCCAGCCTCACCGAGAGCAGGGGCGACGGAAAGCTGGCGGTG
ATCTGGCCTCCCCGCAGAAAGGCTTCGGAGAACGGTCTGGAGCAGGAGGAGCGGAAGCCT
TGAGGTTCGAACAGGCTGTGATCCCCGGACAAAAGTAACATGCTCATCAGAGGACCGAGG
CAGGGGCGCCCAGGAGTGCCCTCCCGATCGTCAGGAAGCCTGGAGAGCTGCCAGAGGTCT
GCGCCAGGGAAGATGAAATCGATCAGCCTACCCATCCTTGAACCTGACTTTGTAAAATTG
ACCTGTATCTTCTATAAAACTGTTAGGCTCGGTTGGGAAACACCACCGCCATAATCCCCG
CCAGGAAAACTGTTCAGCCCTTATCCGTCTAATTGGAAACGGAACTAGCCTCTCCTTCCT
TGACTGTTAGAGGACCGGGGTCACCTCCCCCGCCGCCCCCCTCCCCAATAAAGCCCTTCT
CTCTGGGCAAAAAAAAAAAAAAAATTCCGAGTCCTCTTCGTCTGGGGTGAGGCGGGAGCG
CATCGGAGGAAGGCCTGAAAAAGCTGCTACTGGCGCCGGCCGGAATGCGGAATGTCCCCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9CVC4_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CVC4_MOUSE

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-311, gnl|bosTau2|chr7 (7741315-7741003)
               

               
               1-311, gnl|Hg17|chr19 (14045419-14045730)
               

               
               1-311, gnl|Mm7|chr8 (82589155-82588879)
               


               
               356-840, gnl|bosTau2|chr7 (7740189-7739725)
               

               
               356-840, gnl|Hg17|chr19 (14046522-14046990)
               

               
               356-840, gnl|Mm7|chr8 (82588246-82587858)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-311, gnl|bosTau2|chr7 (7741315-7741003)
               

               
               1-311, gnl|Hg17|chr19 (14045419-14045730)
               

               
               1-311, gnl|Mm7|chr8 (82589155-82588879)
               


               
               356-840, gnl|bosTau2|chr7 (7740189-7739725)
               

               
               356-840, gnl|Hg17|chr19 (14046522-14046990)
               

               
               356-840, gnl|Mm7|chr8 (82588246-82587858)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               csp (0.483559)
               

               
               fli (0.202881)
               

               
               mgm (0.180343)
               

               
               ton (0.1755)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.483559)
               

               
               fli (0.202881)
               

               
               mgm (0.180343)
               

               
               ton (0.1755)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)

	1-311, gnl\|bosTau2\|chr7 (7741315-7741003)
	1-311, gnl\|Hg17\|chr19 (14045419-14045730)
	1-311, gnl\|Mm7\|chr8 (82589155-82588879)

	356-840, gnl\|bosTau2\|chr7 (7740189-7739725)
	356-840, gnl\|Hg17\|chr19 (14046522-14046990)
	356-840, gnl\|Mm7\|chr8 (82588246-82587858)

	csp (0.483559)
	fli (0.202881)
	mgm (0.180343)
	ton (0.1755)
	cst (0.140036)
	che (0.136314)
	ute (0.132784)
	cov (0.132153)
	eep (0.122564)
	cly (0.120642)
	eru (0.120048)
	nbm (0.0993246)