Ss1.1-Spl1-SPL010004B11.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
CTCGCGAAGGTTCCAGAGGCGCCGCGTGCCGGAGGCCGGCTGCTCTCCCGTTCAGAGTCG GGCGTGTTCTCAGGCCGCGGCCACGGCCACTGCGACTCGTGTCCGTGCGATCTGCGCTTG GAATCAGCGCGCTCGTTGCGGCGTTCCTGTTCTCGCCCTGTGCCGGTGGAGCTCGGGCCT TGCCTGACGCAGCTCGACCATGGCTTCAGCTTTGGAAGAGCTACAGAAAGATCTAGAAGA GGTGAAGGTGCTTCTGGAAAAGGCTACTAGAAAAAGAGTACGTGATACCCTGACCACTGA AAAGTCCAAGATTGAGACAGAAATCAAGAACAAGATGCAGCAGAAATCACAGAGGAAAGC AGAACTTCTGGAAAATGAAAAGCCGGCGGCTGTGGTTGCTCCTATTACAACAGGATATAC AGTAAAAATCAGTAATTATGGATGGGATCAGTCAGATAAGTTTGTGAAAATCTACATTAC CTTAACTGGAGTTCATCAAGTCCCCACTGAGAATGTGCAGGTGCATTTCACAGAGAGGTC ATTTGATCTTTTGGTAAAGAATCTAAATGGGAAGAATTACTCCATGATTGTGAACAATCT CTTGAAACCCATCTCCGTGGAGGGCAGTTCAAAAAAAGTCAAGACAGATACAGTTCTTAT CTTATGTAGGAAGAAAGCAGAAAACACACGGTGGGACTACCTGACTCAGGTTGAAAAAGA ATGCAAAGAGAAAGAAAAGCCTTCCTATGACACTGAAACAGATCCTAGTGAGGGATTAAT GAATGTTCTAAAGAAAATTTATGAAGATGGAGATGATGATATGAAGCGAACCATTAATAA AGCCTGGGTGGAATCAAGAGAGAAGCAAGCCAAAGGAGATACAGAATTCTGAGACTTCAA AGCCTTTGGGGAACTGTGATGTGGAAACATTGTTTCCAGTAAGGAAAAGTTGGTGAGCTG CACAGATAAACTTGACAGATAAGTATTTACACAGCAAAGAATTCTCCATTTCCTATTGGA AAATTTATTTTAAAATAACACTTATTAAACACTTCCTCCAAAGATGGTTTTCCTTAGTAA GTGGGTCATTTCCTTCAAGAAAGGGTAATGTTGCAGTCCAGTGTGAAATGTAAAAAAGCA AGCGTTGCCTAATGAAAATGCCATATTGTGTGTATTTCTGTTCAGCTAAGAGGTAGAAAA TAAGTCATTGCTTGCCTTTCAGTTCCTGACTCAGCTCCTGACGTCAGCTACCACCAATGT AAGAATAAATAAAAATAAAACGTGAATTTTTTGCATAAAAAAAAAAAAAAAAAAAAAAAA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
CTCGCGAAGGTTCCAGAGGCGCCGCGTGCCGGAGGCCGGCTGCTCTCCCGTTCAGAGTCG GGCGTGTTCTCAGGCCGCGGCCACGGCCACTGCGACTCGTGTCCGTGCGATCTGCGCTTG GAATCAGCGCGCTCGTTGCGGCGTTCCTGTTCTCGCCCTGTGCCGGTGGAGCTCGGGCCT TGCCTGACGCAGCTCGACCATGGCTTCAGCTTTGGAAGAGCTACAGAAAGATCTAGAAGA GGTGAAGGTGCTTCTGGAAAAGGCTACTAGAAAAAGAGTACGTGATACCCTGACCACTGA AAAGTCCAAGATTGAGACAGAAATCAAGAACAAGATGCAGCAGAAATCACAGAGGAAAGC AGAACTTCTGGAAAATGAAAAGCCGGCGGCTGTGGTTGCTCCTATTACAACAGGATATAC AGTAAAAATCAGTAATTATGGATGGGATCAGTCAGATAAGTTTGTGAAAATCTACATTAC CTTAACTGGAGTTCATCAAGTCCCCACTGAGAATGTGCAGGTGCATTTCACAGAGAGGTC ATTTGATCTTTTGGTAAAGAATCTAAATGGGAAGAATTACTCCATGATTGTGAACAATCT CTTGAAACCCATCTCCGTGGAGGGCAGTTCAAAAAAAGTCAAGACAGATACAGTTCTTAT CTTATGTAGGAAGAAAGCAGAAAACACACGGTGGGACTACCTGACTCAGGTTGAAAAAGA ATGCAAAGAGAAAGAAAAGCCTTCCTATGACACTGAAACAGATCCTAGTGAGGGATTAAT GAATGTTCTAAAGAAAATTTATGAAGATGGAGATGATGATATGAAGCGAACCATTAATAA AGCCTGGGTGGAATCAAGAGAGAAGCAAGCCAAAGGAGATACAGAATTCTGAGACTTCAA AGCCTTTGGGGAACTGTGATGTGGAAACATTGTTTCCAGTAAGGAAAAGTTGGTGAGCTG CACAGATAAACTTGACAGATAAGTATTTACACAGCAAAGAATTCTCCATTTCCTATTGGA AAATTTATTTTAAAATAACACTTATTAAACACTTCCTCCAAAGATGGTTTTCCTTAGTAA GTGGGTCATTTCCTTCAAGAAAGGGTAATGTTGCAGTCCAGTGTGAAATGTAAAAAAGCA AGCGTTGCCTAATGAAAATGCCATATTGTGTGTATTTCTGTTCAGCTAAGAGGTAGAAAA TAAGTCATTGCTTGCCTTTCAGTTCCTGACTCAGCTCCTGACGTCAGCTACCACCAATGT AAGAATAAATAAAAATAAAACGTGAATTTTTTGCATAAAAAAAAAAAAAAAAAAAAAAAA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
986-1085, - strand, RNAz p=0.940051 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
986-1085, - strand, RNAz p=0.940051 |
Aligned organism(s): 38 entry(ies) | More info |
Aligned organism(s): 38 entry(ies) | Help | Less info |
219-441, gnl|bosTau2|chr16 (44653271-44653493) | |
219-441, gnl|canFam2|chr7 (27347632-27347425) | |
219-441, gnl|danRer3|chr2 (28517701-28517902) | |
219-441, gnl|dasNov1|scaffold_4312 (16954-16750) | |
219-441, gnl|echTel1|scaffold_161499 (4562-4369) | |
219-441, gnl|galGal2|chr8 (7109796-7109619) | |
219-441, gnl|hg17|chr1 (171705367-171705574) | |
219-441, gnl|Hg17|chr1 (171705405-171705627) | |
219-441, gnl|loxAfr1|scaffold_14610 (30674-30481) | |
219-441, gnl|mm7|chr1 (160170695-160170516) | |
219-441, gnl|Mm7|chr1 (160170679-160170461) | |
219-441, gnl|monDom2|scaffold_16 (26205507-26205719) | |
219-441, gnl|oryCun1|scaffold_170818 (9616-9796) | |
219-441, gnl|panTro1|chr1 (154101657-154101864) | |
219-441, gnl|rheMac2|chr1 (204614624-204614831) | |
219-441, gnl|rn3|chr13 (75643647-75643452) | |
219-441, gnl|tetNig1|chr15 (5921756-5921988) | |
536-639, gnl|bosTau2|chr16 (44656357-44656460) | |
536-639, gnl|canFam2|chr7 (27343753-27343645) | |
536-639, gnl|danRer3|chr2 (28519477-28519581) | |
536-639, gnl|dasNov1|scaffold_4312 (14763-14674) | |
536-639, gnl|echTel1|scaffold_161499 (4220-4120) | |
536-639, gnl|galGal2|chr8 (7108233-7108125) | |
536-639, gnl|hg17|chr1 (171707890-171707998) | |
536-639, gnl|Hg17|chr1 (171707889-171707992) | |
536-639, gnl|loxAfr1|scaffold_21726 (40182-40074) | |
536-639, gnl|mm7|chr1 (160168281-160168171) | |
536-639, gnl|Mm7|chr1 (160168280-160168177) | |
536-639, gnl|monDom2|scaffold_16 (26208481-26208593) | |
536-639, gnl|oryCun1|scaffold_179373 (34683-34795) | |
536-639, gnl|panTro1|chr1 (154104181-154104289) | |
536-639, gnl|rheMac2|chr1 (204617463-204617569) | |
536-639, gnl|rn3|chr13 (75641160-75641047) | |
536-639, gnl|tetNig1|chr15 (5922289-5922400) | |
536-639, gnl|xenTro1|scaffold_197 (1606463-1606571) | |
736-1238, gnl|bosTau2|chr16 (44659270-44659791) | |
736-1238, gnl|Hg17|chr1 (171710716-171711241) | |
736-1238, gnl|Mm7|chr1 (160165806-160165284) |
Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
219-441, gnl|bosTau2|chr16 (44653271-44653493) | |
219-441, gnl|canFam2|chr7 (27347632-27347425) | |
219-441, gnl|danRer3|chr2 (28517701-28517902) | |
219-441, gnl|dasNov1|scaffold_4312 (16954-16750) | |
219-441, gnl|echTel1|scaffold_161499 (4562-4369) | |
219-441, gnl|galGal2|chr8 (7109796-7109619) | |
219-441, gnl|hg17|chr1 (171705367-171705574) | |
219-441, gnl|Hg17|chr1 (171705405-171705627) | |
219-441, gnl|loxAfr1|scaffold_14610 (30674-30481) | |
219-441, gnl|mm7|chr1 (160170695-160170516) | |
219-441, gnl|Mm7|chr1 (160170679-160170461) | |
219-441, gnl|monDom2|scaffold_16 (26205507-26205719) | |
219-441, gnl|oryCun1|scaffold_170818 (9616-9796) | |
219-441, gnl|panTro1|chr1 (154101657-154101864) | |
219-441, gnl|rheMac2|chr1 (204614624-204614831) | |
219-441, gnl|rn3|chr13 (75643647-75643452) | |
219-441, gnl|tetNig1|chr15 (5921756-5921988) | |
536-639, gnl|bosTau2|chr16 (44656357-44656460) | |
536-639, gnl|canFam2|chr7 (27343753-27343645) | |
536-639, gnl|danRer3|chr2 (28519477-28519581) | |
536-639, gnl|dasNov1|scaffold_4312 (14763-14674) | |
536-639, gnl|echTel1|scaffold_161499 (4220-4120) | |
536-639, gnl|galGal2|chr8 (7108233-7108125) | |
536-639, gnl|hg17|chr1 (171707890-171707998) | |
536-639, gnl|Hg17|chr1 (171707889-171707992) | |
536-639, gnl|loxAfr1|scaffold_21726 (40182-40074) | |
536-639, gnl|mm7|chr1 (160168281-160168171) | |
536-639, gnl|Mm7|chr1 (160168280-160168177) | |
536-639, gnl|monDom2|scaffold_16 (26208481-26208593) | |
536-639, gnl|oryCun1|scaffold_179373 (34683-34795) | |
536-639, gnl|panTro1|chr1 (154104181-154104289) | |
536-639, gnl|rheMac2|chr1 (204617463-204617569) | |
536-639, gnl|rn3|chr13 (75641160-75641047) | |
536-639, gnl|tetNig1|chr15 (5922289-5922400) | |
536-639, gnl|xenTro1|scaffold_197 (1606463-1606571) | |
736-1238, gnl|bosTau2|chr16 (44659270-44659791) | |
736-1238, gnl|Hg17|chr1 (171710716-171711241) | |
736-1238, gnl|Mm7|chr1 (160165806-160165284) |
Expressed library(ies): 58 entry(ies) | More info |
Expressed library(ies): 58 entry(ies) | Help | Less info |
fcc (1.18671) | |
liv (0.877706) | |
spl (0.859107) | |
vin (0.665115) | |
kid (0.648677) | |
fco (0.628832) | |
fty (0.527519) | |
rec (0.519211) | |
pro (0.512033) | |
tra (0.492368) | |
mgp (0.461361) | |
amn (0.417711) | |
ssp (0.406559) | |
ste (0.405625) | |
ova (0.387397) | |
bla (0.373042) | |
duo (0.345602) | |
cty (0.31224) | |
tbr (0.308356) | |
sme (0.305437) | |
lin (0.291206) | |
pty (0.285429) | |
lnt (0.284616) | |
lyg (0.266205) | |
ret (0.257467) | |
sug (0.254582) | |
thg (0.253582) | |
cbe (0.239234) | |
pan (0.23596) | |
ece (0.229305) | |
tes (0.207814) | |
hea (0.204499) | |
nbm (0.198649) | |
ldo (0.194005) | |
nlu (0.191681) | |
cmu (0.186393) | |
gul (0.177588) | |
ill (0.175593) | |
fbs (0.175346) | |
sin (0.174948) | |
cut (0.169924) | |
nje (0.16592) | |
cje (0.165235) | |
mga (0.160205) | |
eli (0.151814) | |
lun (0.150489) | |
isp (0.150376) | |
bfe (0.149858) | |
ski (0.146735) | |
cst (0.140036) | |
hlv (0.139256) | |
che (0.136314) | |
nmm (0.132802) | |
clu (0.119646) | |
ebs (0.118301) | |
med (0.116252) | |
cbl (0.114797) | |
eje (0.0988338) |
Expressed library(ies): 58 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
fcc (1.18671) | |
liv (0.877706) | |
spl (0.859107) | |
vin (0.665115) | |
kid (0.648677) | |
fco (0.628832) | |
fty (0.527519) | |
rec (0.519211) | |
pro (0.512033) | |
tra (0.492368) | |
mgp (0.461361) | |
amn (0.417711) | |
ssp (0.406559) | |
ste (0.405625) | |
ova (0.387397) | |
bla (0.373042) | |
duo (0.345602) | |
cty (0.31224) | |
tbr (0.308356) | |
sme (0.305437) | |
lin (0.291206) | |
pty (0.285429) | |
lnt (0.284616) | |
lyg (0.266205) | |
ret (0.257467) | |
sug (0.254582) | |
thg (0.253582) | |
cbe (0.239234) | |
pan (0.23596) | |
ece (0.229305) | |
tes (0.207814) | |
hea (0.204499) | |
nbm (0.198649) | |
ldo (0.194005) | |
nlu (0.191681) | |
cmu (0.186393) | |
gul (0.177588) | |
ill (0.175593) | |
fbs (0.175346) | |
sin (0.174948) | |
cut (0.169924) | |
nje (0.16592) | |
cje (0.165235) | |
mga (0.160205) | |
eli (0.151814) | |
lun (0.150489) | |
isp (0.150376) | |
bfe (0.149858) | |
ski (0.146735) | |
cst (0.140036) | |
hlv (0.139256) | |
che (0.136314) | |
nmm (0.132802) | |
clu (0.119646) | |
ebs (0.118301) | |
med (0.116252) | |
cbl (0.114797) | |
eje (0.0988338) |