Ss1.1-Spl1-SPL010004E05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTTCCGCCGAGTCCCTGACCTGCTGCTAGGATCGCGACGGGAACTGGATCCCGAGATCC CCGCGCGGCCCGGGCCTGGCGCCCTGAGGGGAAGAGCGGCCCGGCCCGAGGGCGCTGGGG TGGAGACTTTGACTCCAGTCCCTTCGCTCGCCATGACGGACGGGATCCTAGGGAAGGCAG CCACAATGGAGATCCCCATCCACGGGAATGGTGACGCGGGGCAGCTTCCTGAGGATGATG GGCTGGAGCAGGACCTCCAGCAGGTGATGGTGTCAGGACCCAACCTCAATGAAACCAGCA TTGTGTCTGGTGGCTATGGGGGCTCTGGTGATGGACTCATCCCCACAGGGTCTGGCCGCC ATCCATCTCACAGCGCCCCTCCTGCTGGCCCCGGGGATGAGGTGGCCCGGGGCATCGCTG GAGAGAAGTTCGACATCGTCAAGAAATGGGGCATCAACACGTATAAGTGCACAAAGCAGC TGTTATCAGAGCGGTTTGGCCGAGGCTCCCGGACTGTGGACCTGGAGCTAGAGCTGCAAA TTGAGCTGCTGCGTGAGACGAAGCGCAAGTATGAGAGTGTCCTGCAGCTGGGCCGGGCCC TGACAGCCCACCTCTACAGCCTGCTGCAGACCCAGCATGCACTGGGGGATGCCTTTGCTG ACCTCAGCCAGAAGTCCCCAGAGCTTCAGGAGGAATTTGGCTACAACGCCGAGACGCAGA AGCTGCTGTGCAAAAACGGGGAGACACTGCTGGGGGCCGTGAACTTCTTTGTCTCCAGCA TCAACACGTTGGTGACCAAGACCATGGAAGACACGCTCATGACTGTCAAACAGTATGAGG CTGCCAGGCTGGAATACGATGCCTACCGGACAGACCTAGAGGAGCTGAGCCTAGGCCCCC GCGATGCAGGGACGCGTGGTCGACTCGAGAGTGCCCAGGCCACTTTCCAGGCCCATCGGG ACAAATACGAGAAGCTGCGGGGAGATGTGGCCATCAAGCTCAAGTTCCTGGAAGAAAACA AGATCAAGGTGATGCACAAGCAGCTGCTGCTCTTCCACAACGCTGTGTCGGCCTACTTTG CGGGGAACCAGAAACAGCTGGAGCAGACCCTGCAGCAGTTCAACATCAAGCTGCGGCCTC CGGGCGCTGAGAAGCCCTCCTGGCTAGAGGAGCAGTGAGCCGCTCCAGCCCAGCCTGGCC ATCAAGAAGGACATTGAGGGGGCAGGCCCAGGGTGGGGGAGATTTGGACCTGGGACATCC CTTGCCACCTGCCCTCTGGCTTGGGTTCCCTTTCCCTGGCTGGGGCCTGACGCCAGTTTT ACCCACACTGCTGTGGGTAGGGAGGGGCTTGCAGGCCCAGCGGCTGCTACCCTGTTCTGT ACTTCCTGGCCCCTGGGCTTCATTCCCAGATCTTTTCCTTCCACTCCACAGCCAAAGGCT GTGACAAAACCACTCCCTGGCCAACGGCATCACTCCTCAGGCCGATCCCCAGCTCCTGGG GGGTGCCCCCTGACCAATGGCAGGGCCTCAAAAGGCCCTGTCAGCCAATGGCAGCTCTTC TCAGGCTCCCCTGGGCCAATGATGTTGCCTCCAGTACCCTTTGTCCCTCCTCGATGCGTG CCCATTGCAGAGAAGGGGACTGGGACCAAAGGGGTGGGGATGGGGGAGCCCTCTTTCCGG CCCTGTATCTGAATGGGTCTCCCCTCACCTCCCCACCCAGTTTAATTGTGCTTAGAGCCC TGGAAGATGGGGACCTAGCACTAGGAATAAACCTTTCATAAAAGCAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTTCCGCCGAGTCCCTGACCTGCTGCTAGGATCGCGACGGGAACTGGATCCCGAGATCC CCGCGCGGCCCGGGCCTGGCGCCCTGAGGGGAAGAGCGGCCCGGCCCGAGGGCGCTGGGG TGGAGACTTTGACTCCAGTCCCTTCGCTCGCCATGACGGACGGGATCCTAGGGAAGGCAG CCACAATGGAGATCCCCATCCACGGGAATGGTGACGCGGGGCAGCTTCCTGAGGATGATG GGCTGGAGCAGGACCTCCAGCAGGTGATGGTGTCAGGACCCAACCTCAATGAAACCAGCA TTGTGTCTGGTGGCTATGGGGGCTCTGGTGATGGACTCATCCCCACAGGGTCTGGCCGCC ATCCATCTCACAGCGCCCCTCCTGCTGGCCCCGGGGATGAGGTGGCCCGGGGCATCGCTG GAGAGAAGTTCGACATCGTCAAGAAATGGGGCATCAACACGTATAAGTGCACAAAGCAGC TGTTATCAGAGCGGTTTGGCCGAGGCTCCCGGACTGTGGACCTGGAGCTAGAGCTGCAAA TTGAGCTGCTGCGTGAGACGAAGCGCAAGTATGAGAGTGTCCTGCAGCTGGGCCGGGCCC TGACAGCCCACCTCTACAGCCTGCTGCAGACCCAGCATGCACTGGGGGATGCCTTTGCTG ACCTCAGCCAGAAGTCCCCAGAGCTTCAGGAGGAATTTGGCTACAACGCCGAGACGCAGA AGCTGCTGTGCAAAAACGGGGAGACACTGCTGGGGGCCGTGAACTTCTTTGTCTCCAGCA TCAACACGTTGGTGACCAAGACCATGGAAGACACGCTCATGACTGTCAAACAGTATGAGG CTGCCAGGCTGGAATACGATGCCTACCGGACAGACCTAGAGGAGCTGAGCCTAGGCCCCC GCGATGCAGGGACGCGTGGTCGACTCGAGAGTGCCCAGGCCACTTTCCAGGCCCATCGGG ACAAATACGAGAAGCTGCGGGGAGATGTGGCCATCAAGCTCAAGTTCCTGGAAGAAAACA AGATCAAGGTGATGCACAAGCAGCTGCTGCTCTTCCACAACGCTGTGTCGGCCTACTTTG CGGGGAACCAGAAACAGCTGGAGCAGACCCTGCAGCAGTTCAACATCAAGCTGCGGCCTC CGGGCGCTGAGAAGCCCTCCTGGCTAGAGGAGCAGTGAGCCGCTCCAGCCCAGCCTGGCC ATCAAGAAGGACATTGAGGGGGCAGGCCCAGGGTGGGGGAGATTTGGACCTGGGACATCC CTTGCCACCTGCCCTCTGGCTTGGGTTCCCTTTCCCTGGCTGGGGCCTGACGCCAGTTTT ACCCACACTGCTGTGGGTAGGGAGGGGCTTGCAGGCCCAGCGGCTGCTACCCTGTTCTGT ACTTCCTGGCCCCTGGGCTTCATTCCCAGATCTTTTCCTTCCACTCCACAGCCAAAGGCT GTGACAAAACCACTCCCTGGCCAACGGCATCACTCCTCAGGCCGATCCCCAGCTCCTGGG GGGTGCCCCCTGACCAATGGCAGGGCCTCAAAAGGCCCTGTCAGCCAATGGCAGCTCTTC TCAGGCTCCCCTGGGCCAATGATGTTGCCTCCAGTACCCTTTGTCCCTCCTCGATGCGTG CCCATTGCAGAGAAGGGGACTGGGACCAAAGGGGTGGGGATGGGGGAGCCCTCTTTCCGG CCCTGTATCTGAATGGGTCTCCCCTCACCTCCCCACCCAGTTTAATTGTGCTTAGAGCCC TGGAAGATGGGGACCTAGCACTAGGAATAAACCTTTCATAAAAGCAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 573-1786, - strand, RNAz p=0.997071 | |
| 1141-1258, - strand, RNAz p=0.836326 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 573-1786, - strand, RNAz p=0.997071 | |
| 1141-1258, - strand, RNAz p=0.836326 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 109-252, gnl|bosTau2|chr15 (28752607-28752464) | |
| 109-252, gnl|canFam2|chr21 (32984465-32984592) | |
| 109-252, gnl|danRer3|chr10 (18187889-18187764) | |
| 109-252, gnl|dasNov1|scaffold_126118 (3049-3176) | |
| 109-252, gnl|fr1|chrUn (296065300-296065178) | |
| 109-252, gnl|galGal2|chr1 (188028506-188028399) | |
| 109-252, gnl|hg17|chr11 (6458127-6458254) | |
| 109-252, gnl|Hg17|chr11 (6458271-6458128) | |
| 109-252, gnl|loxAfr1|scaffold_11211 (10209-10290) | |
| 109-252, gnl|mm7|chr7 (101695744-101695871) | |
| 109-252, gnl|Mm7|chr7 (101695888-101695745) | |
| 109-252, gnl|panTro1|chr9 (6601019-6601146) | |
| 109-252, gnl|rheMac2|chr14 (65723953-65723826) | |
| 109-252, gnl|rn3|chr1 (163464018-163464145) | |
| 109-252, gnl|tetNig1|chr16 (4969484-4969581) | |
| 463-690, gnl|bosTau2|chr15 (28750829-28750602) | |
| 463-690, gnl|Hg17|chr11 (6456771-6456543) | |
| 463-690, gnl|Mm7|chr7 (101694466-101694239) | |
| 1021-1311, gnl|bosTau2|chr15 (28749143-28748852) | |
| 1021-1311, gnl|Hg17|chr11 (6455076-6454786) | |
| 1021-1311, gnl|Mm7|chr7 (101692816-101692525) | |
| 1344-1786, gnl|bosTau2|chr15 (28748849-28748405) | |
| 1344-1786, gnl|Hg17|chr11 (6454753-6454325) | |
| 1344-1786, gnl|Mm7|chr7 (101692487-101692042) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 109-252, gnl|bosTau2|chr15 (28752607-28752464) | |
| 109-252, gnl|canFam2|chr21 (32984465-32984592) | |
| 109-252, gnl|danRer3|chr10 (18187889-18187764) | |
| 109-252, gnl|dasNov1|scaffold_126118 (3049-3176) | |
| 109-252, gnl|fr1|chrUn (296065300-296065178) | |
| 109-252, gnl|galGal2|chr1 (188028506-188028399) | |
| 109-252, gnl|hg17|chr11 (6458127-6458254) | |
| 109-252, gnl|Hg17|chr11 (6458271-6458128) | |
| 109-252, gnl|loxAfr1|scaffold_11211 (10209-10290) | |
| 109-252, gnl|mm7|chr7 (101695744-101695871) | |
| 109-252, gnl|Mm7|chr7 (101695888-101695745) | |
| 109-252, gnl|panTro1|chr9 (6601019-6601146) | |
| 109-252, gnl|rheMac2|chr14 (65723953-65723826) | |
| 109-252, gnl|rn3|chr1 (163464018-163464145) | |
| 109-252, gnl|tetNig1|chr16 (4969484-4969581) | |
| 463-690, gnl|bosTau2|chr15 (28750829-28750602) | |
| 463-690, gnl|Hg17|chr11 (6456771-6456543) | |
| 463-690, gnl|Mm7|chr7 (101694466-101694239) | |
| 1021-1311, gnl|bosTau2|chr15 (28749143-28748852) | |
| 1021-1311, gnl|Hg17|chr11 (6455076-6454786) | |
| 1021-1311, gnl|Mm7|chr7 (101692816-101692525) | |
| 1344-1786, gnl|bosTau2|chr15 (28748849-28748405) | |
| 1344-1786, gnl|Hg17|chr11 (6454753-6454325) | |
| 1344-1786, gnl|Mm7|chr7 (101692487-101692042) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| fce (0.271592) | |
| ill (0.175593) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| cty (0.10408) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.271592) | |
| ill (0.175593) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| cty (0.10408) |