Non-Coding RNA Search

Ss1.1-Spl1-SPL010004F08.5

Sequence:


               
               CTGTCGCGTGTGGAGATTGCGTTTGAAACGGGGACCTAAGGAGGGTTGGGGAGGACTGCT
GTCGCGTGTGGAGATTGCGTTTACCTGGCCTCATGGCGGTCCGAGCGTCGTTCGAGAACA
ACTGTGAGATCGGCTGCTTTGCCAAACTTACTAACACCTACTGCCTGGTGGCCATCGGAG
GATCAGAGAACTTCTACAGTGTATTCGAGGGAGAGCTGGCCGATACCATTCCCGTGGTTC
ACGCGTCCATCGCCGGCTGCCGCATCATCGGCCGCATGTGTGTGGGGAACAGGCATGGTC
TCCTGGTGCCCAACAACACCACCGATCAGGAGCTGCAACACATTCGCAATTGCCTCCCGG
ATTCAGTGCAGATCCGGCGGGTAGAAGAACGGCTCTCAGCCCTGGGCAATGTCACCACCT
GCAACGACTACGTGGCCTTAGTCCACCCAGACTTGGACAGGGAAACAGAAGAAATCCTGG
CTGATGTGCTCAGGGTTGAAGTCTTCAGGCAGACAGTGGCTGATCAGGTGCTGGTAGGAA
GCTACTGTGTCTTCAGCAATCAGGGCGGGCTGGTGCATCCCAAGACTTCAATCGAAGACC
AGGATGAGCTGTCCTCTCTCCTTCAGGTCCCCCTTGTGGCGGGCACTGTGAACCGAGGCA
GCGAGGTGATCGCTGCTGGGATGGTGGTGAATGACTGGTGTGCCTTCTGTGGCCTGGACA
CAACCAGCACAGAGCTGTCAGTGGTGGAGAGTGTCTTCAAGCTGAACGAAGCCCAGCCTA
GCACAATTGCTACCAGCATGCGGGATTCCCTCATTGACAGCCTCACCTGAGTCACCTTCC
ATGCTGTTCCCTGGCTCCAGGCCCTGGACTTGGGCTCCTTCTTCACGTCCCACCCAGTCT
GTCTTGGATGCTGGCAGGGCAGTGGCAGAGAGCTCACTTGGACTCGTGGCTGGATGCCCA
GCCCTTCACCTGTGCCCATCTCTTGAATCTATAGCTAATGTAAAAATCTGCCACATCATG
CTGGCTGGCAGGTCCTGTGGCTTCTGGTTGAGAGCTCTTTTGTCCTGTGCCACCCCATTA
AAGGGCAGTTTCCTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTCGCGTGTGGAGATTGCGTTTGAAACGGGGACCTAAGGAGGGTTGGGGAGGACTGCT
GTCGCGTGTGGAGATTGCGTTTACCTGGCCTCATGGCGGTCCGAGCGTCGTTCGAGAACA
ACTGTGAGATCGGCTGCTTTGCCAAACTTACTAACACCTACTGCCTGGTGGCCATCGGAG
GATCAGAGAACTTCTACAGTGTATTCGAGGGAGAGCTGGCCGATACCATTCCCGTGGTTC
ACGCGTCCATCGCCGGCTGCCGCATCATCGGCCGCATGTGTGTGGGGAACAGGCATGGTC
TCCTGGTGCCCAACAACACCACCGATCAGGAGCTGCAACACATTCGCAATTGCCTCCCGG
ATTCAGTGCAGATCCGGCGGGTAGAAGAACGGCTCTCAGCCCTGGGCAATGTCACCACCT
GCAACGACTACGTGGCCTTAGTCCACCCAGACTTGGACAGGGAAACAGAAGAAATCCTGG
CTGATGTGCTCAGGGTTGAAGTCTTCAGGCAGACAGTGGCTGATCAGGTGCTGGTAGGAA
GCTACTGTGTCTTCAGCAATCAGGGCGGGCTGGTGCATCCCAAGACTTCAATCGAAGACC
AGGATGAGCTGTCCTCTCTCCTTCAGGTCCCCCTTGTGGCGGGCACTGTGAACCGAGGCA
GCGAGGTGATCGCTGCTGGGATGGTGGTGAATGACTGGTGTGCCTTCTGTGGCCTGGACA
CAACCAGCACAGAGCTGTCAGTGGTGGAGAGTGTCTTCAAGCTGAACGAAGCCCAGCCTA
GCACAATTGCTACCAGCATGCGGGATTCCCTCATTGACAGCCTCACCTGAGTCACCTTCC
ATGCTGTTCCCTGGCTCCAGGCCCTGGACTTGGGCTCCTTCTTCACGTCCCACCCAGTCT
GTCTTGGATGCTGGCAGGGCAGTGGCAGAGAGCTCACTTGGACTCGTGGCTGGATGCCCA
GCCCTTCACCTGTGCCCATCTCTTGAATCTATAGCTAATGTAAAAATCTGCCACATCATG
CTGGCTGGCAGGTCCTGTGGCTTCTGGTTGAGAGCTCTTTTGTCCTGTGCCACCCCATTA
AAGGGCAGTTTCCTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57104176|ref|XP_534401.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57104176|ref|XP_534401.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               500-619, + strand, RNAz p=0.978417

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               500-619, + strand, RNAz p=0.978417

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               25-289, gnl|bosTau2|chr13 (45182347-45182607)
               


               
               461-639, gnl|bosTau2|chr13 (45184847-45185025)
               

               
               461-639, gnl|Hg17|chr20 (33331336-33331158)
               

               
               461-639, gnl|Mm7|chr2 (155564227-155564049)
               


               
               818-1097, gnl|bosTau2|chr13 (45187602-45187873)
               

               
               818-1097, gnl|Hg17|chr20 (33330426-33330140)
               

               
               818-1097, gnl|Mm7|chr2 (155560972-155560699)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-289, gnl|bosTau2|chr13 (45182347-45182607)
               


               
               461-639, gnl|bosTau2|chr13 (45184847-45185025)
               

               
               461-639, gnl|Hg17|chr20 (33331336-33331158)
               

               
               461-639, gnl|Mm7|chr2 (155564227-155564049)
               


               
               818-1097, gnl|bosTau2|chr13 (45187602-45187873)
               

               
               818-1097, gnl|Hg17|chr20 (33330426-33330140)
               

               
               818-1097, gnl|Mm7|chr2 (155560972-155560699)

Expressed library(ies): 31 entry(ies)

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Expressed library(ies): 31 entry(ies)

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               csp (0.805932)
               

               
               nlu (0.766724)
               

               
               ton (0.702001)
               

               
               cag (0.453583)
               

               
               fcc (0.39557)
               

               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               fty (0.351679)
               

               
               duo (0.345602)
               

               
               jej (0.296765)
               

               
               cst (0.280073)
               

               
               cly (0.241284)
               

               
               pgl (0.236967)
               

               
               ecc (0.23007)
               

               
               jca (0.22792)
               

               
               cty (0.20816)
               

               
               fli (0.202881)
               

               
               ill (0.175593)
               

               
               ctl (0.153069)
               

               
               cli (0.152812)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 31 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.805932)
               

               
               nlu (0.766724)
               

               
               ton (0.702001)
               

               
               cag (0.453583)
               

               
               fcc (0.39557)
               

               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               fty (0.351679)
               

               
               duo (0.345602)
               

               
               jej (0.296765)
               

               
               cst (0.280073)
               

               
               cly (0.241284)
               

               
               pgl (0.236967)
               

               
               ecc (0.23007)
               

               
               jca (0.22792)
               

               
               cty (0.20816)
               

               
               fli (0.202881)
               

               
               ill (0.175593)
               

               
               ctl (0.153069)
               

               
               cli (0.152812)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	25-289, gnl\|bosTau2\|chr13 (45182347-45182607)

	461-639, gnl\|bosTau2\|chr13 (45184847-45185025)
	461-639, gnl\|Hg17\|chr20 (33331336-33331158)
	461-639, gnl\|Mm7\|chr2 (155564227-155564049)

	818-1097, gnl\|bosTau2\|chr13 (45187602-45187873)
	818-1097, gnl\|Hg17\|chr20 (33330426-33330140)
	818-1097, gnl\|Mm7\|chr2 (155560972-155560699)

	csp (0.805932)
	nlu (0.766724)
	ton (0.702001)
	cag (0.453583)
	fcc (0.39557)
	col (0.390016)
	elu (0.385356)
	fty (0.351679)
	duo (0.345602)
	jej (0.296765)
	cst (0.280073)
	cly (0.241284)
	pgl (0.236967)
	ecc (0.23007)
	jca (0.22792)
	cty (0.20816)
	fli (0.202881)
	ill (0.175593)
	ctl (0.153069)
	cli (0.152812)
	pty (0.142714)
	lnt (0.142308)
	nca (0.136874)
	ssp (0.13552)
	ute (0.132784)
	ese (0.126502)
	eep (0.122564)
	clu (0.119646)
	ebs (0.118301)
	nbm (0.0993246)
	eje (0.0988338)