Ss1.1-Spl1-SPL010005A03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCCTGGAGGAGGAGTCTCTTCTTAAGTTGAGAGGTTTGGGGTGGGCCCCCCGCCCCCAA AGGCGGCTCCGGGGACACCTGGGACCACGGCTGAGACGTGTGGTGGCTGGAGGGAAGTGA GAGGTGGCCTCGGCCTGGGCCGGGCTGGGCGAGACCCTCCACCACCCACTCCCCTGGACC ACTGATGGCCATGGCCGTGGCCCAGCAGCTGCGGGCTGAGAGCGACTTCGCCCAGCTTCC TGACGACATTGCCGTCTCAGCCAACATCGCGGACATCGAGGAGAAGAGAGGCTTCACCAG CCACTTTGTTTTCGTCATCGAGGTGAAGACGAAAGGGGGGTGCAAGTACCTCATTTACCG TCGCTACCGCCAGTTCTACGCCTTGCAGAGCAAACTGGAGGAGCGCTTCGGGCCGGAGAG CAAGACCAGCCCCTTCACCTGCGTCCTGCCCACGCTCCCAGCCAAAGTCTACGTGGGTGT GAAACAGGAGATTGCCGAGATGCGGATACCCGCCCTCAACGCCTACATGAAGAACCTCCT CAGCCTGCCCATCTGTGTGCTGATGGATGAGGATGTCCGGATCTTCTTCTACCAGTCATC CTACGATGCGGAGCAGGTGCCCCAGGGGCTCCGCCGGCTCCGCCCGCGCACCCGGAAAGT GAAGAGCGAGTCCCCACAAGGTGCCAGCCTTGACCGCATGGCAGCTCCACGAGCAGAGGC CCTGTTTGATTTCACTGGGAACAGCAAACTGGAGCTGAATTTCAAAGTCGGAGATGTGAT CTTCCTTCTCAGTCGGATTAATAAAGACTGGTTGGAGGGCACTCTCCGCGGAACCACGGG CATCTTCCCAGCGTCCTTTGTGAAGATCCTCAAGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCCTGGAGGAGGAGTCTCTTCTTAAGTTGAGAGGTTTGGGGTGGGCCCCCCGCCCCCAA AGGCGGCTCCGGGGACACCTGGGACCACGGCTGAGACGTGTGGTGGCTGGAGGGAAGTGA GAGGTGGCCTCGGCCTGGGCCGGGCTGGGCGAGACCCTCCACCACCCACTCCCCTGGACC ACTGATGGCCATGGCCGTGGCCCAGCAGCTGCGGGCTGAGAGCGACTTCGCCCAGCTTCC TGACGACATTGCCGTCTCAGCCAACATCGCGGACATCGAGGAGAAGAGAGGCTTCACCAG CCACTTTGTTTTCGTCATCGAGGTGAAGACGAAAGGGGGGTGCAAGTACCTCATTTACCG TCGCTACCGCCAGTTCTACGCCTTGCAGAGCAAACTGGAGGAGCGCTTCGGGCCGGAGAG CAAGACCAGCCCCTTCACCTGCGTCCTGCCCACGCTCCCAGCCAAAGTCTACGTGGGTGT GAAACAGGAGATTGCCGAGATGCGGATACCCGCCCTCAACGCCTACATGAAGAACCTCCT CAGCCTGCCCATCTGTGTGCTGATGGATGAGGATGTCCGGATCTTCTTCTACCAGTCATC CTACGATGCGGAGCAGGTGCCCCAGGGGCTCCGCCGGCTCCGCCCGCGCACCCGGAAAGT GAAGAGCGAGTCCCCACAAGGTGCCAGCCTTGACCGCATGGCAGCTCCACGAGCAGAGGC CCTGTTTGATTTCACTGGGAACAGCAAACTGGAGCTGAATTTCAAAGTCGGAGATGTGAT CTTCCTTCTCAGTCGGATTAATAAAGACTGGTTGGAGGGCACTCTCCGCGGAACCACGGG CATCTTCCCAGCGTCCTTTGTGAAGATCCTCAAGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 5-95, - strand, RNAz p=0.755208 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 5-95, - strand, RNAz p=0.755208 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 2-222, gnl|bosTau2|chr5 (45040603-45040815) | |
| 2-222, gnl|canFam2|chr10 (30687656-30687396) | |
| 2-222, gnl|echTel1|scaffold_88398 (305-58) | |
| 2-222, gnl|hg17|chr22 (35581460-35581726) | |
| 2-222, gnl|Hg17|chr22 (35581526-35581745) | |
| 2-222, gnl|loxAfr1|scaffold_36820 (13370-13110) | |
| 2-222, gnl|mm7|chr15 (78327756-78328020) | |
| 2-222, gnl|Mm7|chr15 (78327817-78328039) | |
| 2-222, gnl|monDom2|scaffold_34 (1406246-1405960) | |
| 2-222, gnl|oryCun1|scaffold_141974 (638-409) | |
| 2-222, gnl|panTro1|chr23 (35748845-35749111) | |
| 2-222, gnl|rheMac2|chr10 (80758980-80759246) | |
| 2-222, gnl|rn3|chr7 (116201832-116202096) | |
| 531-661, gnl|bosTau2|chr5 (45053199-45053329) | |
| 531-661, gnl|canFam2|chr10 (30676181-30676027) | |
| 531-661, gnl|hg17|chr22 (35590955-35591109) | |
| 531-661, gnl|Hg17|chr22 (35590955-35591085) | |
| 531-661, gnl|loxAfr1|scaffold_36820 (4330-4179) | |
| 531-661, gnl|mm7|chr15 (78337737-78337890) | |
| 531-661, gnl|Mm7|chr15 (78337737-78337867) | |
| 531-661, gnl|rheMac2|chr10 (80770609-80770763) | |
| 531-661, gnl|rn3|chr7 (116212894-116213053) | |
| 531-661, gnl|tetNig1|chr18 (9326138-9326288) | |
| 717-818, gnl|bosTau2|chr5 (45055108-45055209) | |
| 717-818, gnl|canFam2|chr10 (30673996-30673885) | |
| 717-818, gnl|dasNov1|scaffold_103095 (1746-1636) | |
| 717-818, gnl|echTel1|scaffold_272778 (3043-2932) | |
| 717-818, gnl|galGal2|chr1 (48285157-48285066) | |
| 717-818, gnl|hg17|chr22 (35592861-35592973) | |
| 717-818, gnl|Hg17|chr22 (35592867-35592968) | |
| 717-818, gnl|loxAfr1|scaffold_36820 (2244-2145) | |
| 717-818, gnl|mm7|chr15 (78338875-78338987) | |
| 717-818, gnl|Mm7|chr15 (78338881-78338982) | |
| 717-818, gnl|monDom2|scaffold_34 (1381643-1381531) | |
| 717-818, gnl|panTro1|chr23 (35763418-35763530) | |
| 717-818, gnl|rheMac2|chr10 (80772510-80772622) | |
| 717-818, gnl|rn3|chr7 (116214396-116214508) | |
| 717-818, gnl|tetNig1|chr18 (9330709-9330796) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-222, gnl|bosTau2|chr5 (45040603-45040815) | |
| 2-222, gnl|canFam2|chr10 (30687656-30687396) | |
| 2-222, gnl|echTel1|scaffold_88398 (305-58) | |
| 2-222, gnl|hg17|chr22 (35581460-35581726) | |
| 2-222, gnl|Hg17|chr22 (35581526-35581745) | |
| 2-222, gnl|loxAfr1|scaffold_36820 (13370-13110) | |
| 2-222, gnl|mm7|chr15 (78327756-78328020) | |
| 2-222, gnl|Mm7|chr15 (78327817-78328039) | |
| 2-222, gnl|monDom2|scaffold_34 (1406246-1405960) | |
| 2-222, gnl|oryCun1|scaffold_141974 (638-409) | |
| 2-222, gnl|panTro1|chr23 (35748845-35749111) | |
| 2-222, gnl|rheMac2|chr10 (80758980-80759246) | |
| 2-222, gnl|rn3|chr7 (116201832-116202096) | |
| 531-661, gnl|bosTau2|chr5 (45053199-45053329) | |
| 531-661, gnl|canFam2|chr10 (30676181-30676027) | |
| 531-661, gnl|hg17|chr22 (35590955-35591109) | |
| 531-661, gnl|Hg17|chr22 (35590955-35591085) | |
| 531-661, gnl|loxAfr1|scaffold_36820 (4330-4179) | |
| 531-661, gnl|mm7|chr15 (78337737-78337890) | |
| 531-661, gnl|Mm7|chr15 (78337737-78337867) | |
| 531-661, gnl|rheMac2|chr10 (80770609-80770763) | |
| 531-661, gnl|rn3|chr7 (116212894-116213053) | |
| 531-661, gnl|tetNig1|chr18 (9326138-9326288) | |
| 717-818, gnl|bosTau2|chr5 (45055108-45055209) | |
| 717-818, gnl|canFam2|chr10 (30673996-30673885) | |
| 717-818, gnl|dasNov1|scaffold_103095 (1746-1636) | |
| 717-818, gnl|echTel1|scaffold_272778 (3043-2932) | |
| 717-818, gnl|galGal2|chr1 (48285157-48285066) | |
| 717-818, gnl|hg17|chr22 (35592861-35592973) | |
| 717-818, gnl|Hg17|chr22 (35592867-35592968) | |
| 717-818, gnl|loxAfr1|scaffold_36820 (2244-2145) | |
| 717-818, gnl|mm7|chr15 (78338875-78338987) | |
| 717-818, gnl|Mm7|chr15 (78338881-78338982) | |
| 717-818, gnl|monDom2|scaffold_34 (1381643-1381531) | |
| 717-818, gnl|panTro1|chr23 (35763418-35763530) | |
| 717-818, gnl|rheMac2|chr10 (80772510-80772622) | |
| 717-818, gnl|rn3|chr7 (116214396-116214508) | |
| 717-818, gnl|tetNig1|chr18 (9330709-9330796) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.114797) |