Ss1.1-Spl1-SPL010005B04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACACCCATCAGCAGAAGAAATCTAAATCCCCTGTCATTTCTCCTCAACCTCAGAGCAAC CTGGGTTCAAGTCCCTGGGTCACCAGATTTTTGTTTGTGAGGAATCTCCCAGAAAGAAGC TTGCTGCCTCTTCCATTTTCTTTTGTTAACATGCTT------------GGCCCTGTGCTG GGGCTTCTGTTGGCCCAGGTTTGCTGTGTGAGAGGAGTGGATGTGGAGCAGAGTCCCCCA GCCCTGAGTCTCCAGGAGGGAGTCAGCTCCACGCTCTGGTGCAATTTT------------ ------------TGGTATCGTCAG------------------------TTGTTTTCCATT ------------------------AGATTAAACGCCACGACAGTCGCTACAGAACGCCGC AGCTCACTGTACATTTCCTCTGCCCAGATCACAGACTCAGCCACGTACCTCTGTGCTGGG ------------------------AAGCTCACATTTGGACAAGGCACCACACTGCTGGTC CATCCAAATATCAAGAACCCTGACCCCGCCGTGTACCAGCTGAAAGGCCCCAAATCTAAC AACATCAGTGTATGCCTATACACTGATTTTCAAATGAATACAACAAAAGACTCGGAGCCC GCGGTGTTCAGCTTGAGCAGGACTGTGTTCAACTCAAACACAACTGTGCTAGACATGGGG GCCGTGGGTTCCAAGAGCAACGGGCTCGTGGCTTGGAGCAAAAGCACCGATTTTGAATGT CAAAGCACCTTCCAGCAGGAATTCTATCCTAACTCAGGAATTTCCTGTGATGCCAAGTTG GTAGAGAAAAGCTTTGAAACGGATATGAACCTCAACCTCCAAAACCTGTCAGTGATGGGG TTCCGCATCATCCTCCTGAAAATGGTTGGGTTTAACCTGCTCATGACACTGCGGCTGTGG TCCAGCTGAGGTCACCAAGAGCAGGAGAGCCCCCCAATCCCTCGCTCCCTCGCTCCCTCA CCCCCTGCTCCTCCTCATGGCCCCTCCCCTCGGTCTCCAAGCAACAAGGTGCCTGCACTC TCTGCCCCACTGGAGCGAAGGCTCCCTCCACCGGTCTGGCCCCTCCACTGATACCACCGA CTGGATCCTACTGGATATTGGGATATTTATGAGCAAGATGCTGAAGAGCTTCCCAATGCT GCTGCCACCCCTTCTGCTCCCTCACTGCTGCTTGACACTGCCTGGCACTCCCGCCAAAGA TGACAGGGGCTGTTGTAGCCCCTCTGGGGCCGTGGGAGACTTCCCACTTCCCAGCAGTGC CTCTGCTGTCCCACTGGATGATCCCTGGGGGTTCTCTTGGGCCTTAGCCCCTGAGGAATG TTGTGCAGAGTTTATATTTTTTAAAATAGTGTTCATAAAGAAATACCTACCTATCATTCC TTTTTCCAAAGTAGTGGGAGAAATTATCTCATTGTCCAGGCCCTGCTCTGCTGTGTATCT GAGCTACATTGTATATTCTGCTGCCATGGCGTCAATGCGATTTGGAAGGAAGAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACACCCATCAGCAGAAGAAATCTAAATCCCCTGTCATTTCTCCTCAACCTCAGAGCAAC CTGGGTTCAAGTCCCTGGGTCACCAGATTTTTGTTTGTGAGGAATCTCCCAGAAAGAAGC TTGCTGCCTCTTCCATTTTCTTTTGTTAACATGCTT------------GGCCCTGTGCTG GGGCTTCTGTTGGCCCAGGTTTGCTGTGTGAGAGGAGTGGATGTGGAGCAGAGTCCCCCA GCCCTGAGTCTCCAGGAGGGAGTCAGCTCCACGCTCTGGTGCAATTTT------------ ------------TGGTATCGTCAG------------------------TTGTTTTCCATT ------------------------AGATTAAACGCCACGACAGTCGCTACAGAACGCCGC AGCTCACTGTACATTTCCTCTGCCCAGATCACAGACTCAGCCACGTACCTCTGTGCTGGG ------------------------AAGCTCACATTTGGACAAGGCACCACACTGCTGGTC CATCCAAATATCAAGAACCCTGACCCCGCCGTGTACCAGCTGAAAGGCCCCAAATCTAAC AACATCAGTGTATGCCTATACACTGATTTTCAAATGAATACAACAAAAGACTCGGAGCCC GCGGTGTTCAGCTTGAGCAGGACTGTGTTCAACTCAAACACAACTGTGCTAGACATGGGG GCCGTGGGTTCCAAGAGCAACGGGCTCGTGGCTTGGAGCAAAAGCACCGATTTTGAATGT CAAAGCACCTTCCAGCAGGAATTCTATCCTAACTCAGGAATTTCCTGTGATGCCAAGTTG GTAGAGAAAAGCTTTGAAACGGATATGAACCTCAACCTCCAAAACCTGTCAGTGATGGGG TTCCGCATCATCCTCCTGAAAATGGTTGGGTTTAACCTGCTCATGACACTGCGGCTGTGG TCCAGCTGAGGTCACCAAGAGCAGGAGAGCCCCCCAATCCCTCGCTCCCTCGCTCCCTCA CCCCCTGCTCCTCCTCATGGCCCCTCCCCTCGGTCTCCAAGCAACAAGGTGCCTGCACTC TCTGCCCCACTGGAGCGAAGGCTCCCTCCACCGGTCTGGCCCCTCCACTGATACCACCGA CTGGATCCTACTGGATATTGGGATATTTATGAGCAAGATGCTGAAGAGCTTCCCAATGCT GCTGCCACCCCTTCTGCTCCCTCACTGCTGCTTGACACTGCCTGGCACTCCCGCCAAAGA TGACAGGGGCTGTTGTAGCCCCTCTGGGGCCGTGGGAGACTTCCCACTTCCCAGCAGTGC CTCTGCTGTCCCACTGGATGATCCCTGGGGGTTCTCTTGGGCCTTAGCCCCTGAGGAATG TTGTGCAGAGTTTATATTTTTTAAAATAGTGTTCATAAAGAAATACCTACCTATCATTCC TTTTTCCAAAGTAGTGGGAGAAATTATCTCATTGTCCAGGCCCTGCTCTGCTGTGTATCT GAGCTACATTGTATATTCTGCTGCCATGGCGTCAATGCGATTTGGAAGGAAGAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1304-1440, - strand, RNAz p=0.99846 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1304-1440, - strand, RNAz p=0.99846 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 301-403, gnl|bosTau2|chr10 (15480576-15480678) | |
| 301-403, gnl|Hg17|chr14 (21609212-21609315) | |
| 301-403, gnl|Mm7|chr14 (48199483-48199586) | |
| 428-684, gnl|bosTau2|chr10 (14466034-14465783) | |
| 428-684, gnl|canFam2|chr8 (5951843-5952428) | |
| 428-684, gnl|dasNov1|scaffold_523 (102505-103099) | |
| 428-684, gnl|echTel1|scaffold_324100 (26274-25697) | |
| 428-684, gnl|hg17|chr14 (22086188-22086811) | |
| 428-684, gnl|Hg17|chr14 (22086277-22086516) | |
| 428-684, gnl|loxAfr1|scaffold_39946 (531-1146) | |
| 428-684, gnl|mm7|chr14 (49090415-49090950) | |
| 428-684, gnl|Mm7|chr14 (49090495-49090734) | |
| 428-684, gnl|monDom2|scaffold_12 (27477216-27476549) | |
| 428-684, gnl|oryCun1|scaffold_177867 (13425-14046) | |
| 428-684, gnl|panTro1|chr15 (21027235-21027858) | |
| 428-684, gnl|rheMac2|chr7 (85355054-85355677) | |
| 428-684, gnl|rn3|chr15 (32285864-32286397) | |
| 754-864, gnl|bosTau2|chr10 (14462379-14462269) | |
| 754-864, gnl|canFam2|chr8 (5954448-5955027) | |
| 754-864, gnl|echTel1|scaffold_324100 (24465-23868) | |
| 754-864, gnl|hg17|chr14 (22089189-22089750) | |
| 754-864, gnl|Hg17|chr14 (22089340-22089450) | |
| 754-864, gnl|loxAfr1|scaffold_39946 (3241-3828) | |
| 754-864, gnl|mm7|chr14 (49092802-49093399) | |
| 754-864, gnl|Mm7|chr14 (49092952-49093062) | |
| 754-864, gnl|monDom2|scaffold_12 (27475028-27474446) | |
| 754-864, gnl|oryCun1|scaffold_177867 (15978-16518) | |
| 754-864, gnl|panTro1|chr15 (21030231-21030792) | |
| 754-864, gnl|rheMac2|chr7 (85358047-85358606) | |
| 754-864, gnl|rn3|chr15 (32288283-32288862) | |
| 899-1440, gnl|bosTau2|chr10 (14461593-14461051) | |
| 899-1440, gnl|canFam2|chr8 (5955273-5955721) | |
| 899-1440, gnl|dasNov1|scaffold_523 (108179-108631) | |
| 899-1440, gnl|hg17|chr14 (22090286-22090737) | |
| 899-1440, gnl|Hg17|chr14 (22090411-22090933) | |
| 899-1440, gnl|loxAfr1|scaffold_39946 (4088-4519) | |
| 899-1440, gnl|mm7|chr14 (49093558-49093943) | |
| 899-1440, gnl|Mm7|chr14 (49093666-49094160) | |
| 899-1440, gnl|monDom2|scaffold_12 (27473801-27473331) | |
| 899-1440, gnl|oryCun1|scaffold_177867 (16693-17139) | |
| 899-1440, gnl|panTro1|chr15 (21031326-21031777) | |
| 899-1440, gnl|rheMac2|chr7 (85359075-85359527) | |
| 899-1440, gnl|rn3|chr15 (32289038-32289372) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 301-403, gnl|bosTau2|chr10 (15480576-15480678) | |
| 301-403, gnl|Hg17|chr14 (21609212-21609315) | |
| 301-403, gnl|Mm7|chr14 (48199483-48199586) | |
| 428-684, gnl|bosTau2|chr10 (14466034-14465783) | |
| 428-684, gnl|canFam2|chr8 (5951843-5952428) | |
| 428-684, gnl|dasNov1|scaffold_523 (102505-103099) | |
| 428-684, gnl|echTel1|scaffold_324100 (26274-25697) | |
| 428-684, gnl|hg17|chr14 (22086188-22086811) | |
| 428-684, gnl|Hg17|chr14 (22086277-22086516) | |
| 428-684, gnl|loxAfr1|scaffold_39946 (531-1146) | |
| 428-684, gnl|mm7|chr14 (49090415-49090950) | |
| 428-684, gnl|Mm7|chr14 (49090495-49090734) | |
| 428-684, gnl|monDom2|scaffold_12 (27477216-27476549) | |
| 428-684, gnl|oryCun1|scaffold_177867 (13425-14046) | |
| 428-684, gnl|panTro1|chr15 (21027235-21027858) | |
| 428-684, gnl|rheMac2|chr7 (85355054-85355677) | |
| 428-684, gnl|rn3|chr15 (32285864-32286397) | |
| 754-864, gnl|bosTau2|chr10 (14462379-14462269) | |
| 754-864, gnl|canFam2|chr8 (5954448-5955027) | |
| 754-864, gnl|echTel1|scaffold_324100 (24465-23868) | |
| 754-864, gnl|hg17|chr14 (22089189-22089750) | |
| 754-864, gnl|Hg17|chr14 (22089340-22089450) | |
| 754-864, gnl|loxAfr1|scaffold_39946 (3241-3828) | |
| 754-864, gnl|mm7|chr14 (49092802-49093399) | |
| 754-864, gnl|Mm7|chr14 (49092952-49093062) | |
| 754-864, gnl|monDom2|scaffold_12 (27475028-27474446) | |
| 754-864, gnl|oryCun1|scaffold_177867 (15978-16518) | |
| 754-864, gnl|panTro1|chr15 (21030231-21030792) | |
| 754-864, gnl|rheMac2|chr7 (85358047-85358606) | |
| 754-864, gnl|rn3|chr15 (32288283-32288862) | |
| 899-1440, gnl|bosTau2|chr10 (14461593-14461051) | |
| 899-1440, gnl|canFam2|chr8 (5955273-5955721) | |
| 899-1440, gnl|dasNov1|scaffold_523 (108179-108631) | |
| 899-1440, gnl|hg17|chr14 (22090286-22090737) | |
| 899-1440, gnl|Hg17|chr14 (22090411-22090933) | |
| 899-1440, gnl|loxAfr1|scaffold_39946 (4088-4519) | |
| 899-1440, gnl|mm7|chr14 (49093558-49093943) | |
| 899-1440, gnl|Mm7|chr14 (49093666-49094160) | |
| 899-1440, gnl|monDom2|scaffold_12 (27473801-27473331) | |
| 899-1440, gnl|oryCun1|scaffold_177867 (16693-17139) | |
| 899-1440, gnl|panTro1|chr15 (21031326-21031777) | |
| 899-1440, gnl|rheMac2|chr7 (85359075-85359527) | |
| 899-1440, gnl|rn3|chr15 (32289038-32289372) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| ill (0.702371) | |
| cty (0.62448) | |
| med (0.465008) | |
| lnt (0.426925) | |
| fty (0.351679) | |
| csp (0.322373) | |
| cly (0.241284) | |
| jej (0.197844) | |
| sin (0.174948) | |
| fat (0.147427) | |
| clu (0.119646) | |
| cbl (0.114797) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.702371) | |
| cty (0.62448) | |
| med (0.465008) | |
| lnt (0.426925) | |
| fty (0.351679) | |
| csp (0.322373) | |
| cly (0.241284) | |
| jej (0.197844) | |
| sin (0.174948) | |
| fat (0.147427) | |
| clu (0.119646) | |
| cbl (0.114797) |