Non-Coding RNA Search

Ss1.1-Spl1-SPL010005D11.5

Sequence:


               
               TCCAGCCTGTCTGTCGCTGGCCTTGGGGACAGAAGAGATGAGAGGGGAAGGAGGAGATGA
TGCCAGGTGCCTGGGGTCCTCCAGGTTCCCAGGAAACACCCTTGATGGGTGCCCCTCTTC
TTGCCAGGCAACCATCGGCCTGATCAGGAATCTGGCCCTGTGCCCAGCCAACCACGCCCC
ACTGCAGGAGGCATCTGTCATCCCCCGCCTCGTCCAGCTGCTGGTCAAGGCCCATCAGGA
TGCCCAGCGCCATGTGGCTGCAGGCACACAGCAGCCCTACACGGATGGCGTGAGGATGGA
GGAGATTGTGGAGGGCTGCACCGGAGCCCTGCACATCCTCGCCCGGGATCCCATGAACCG
CATGGAGATCTTCCGACTCAACACCATCCCCCTGTTTGTGCAGGTGAGTCTGGGACAGGT
GGGCAGGAGAGGGTCCCTCCGAAAAATCCCTGCTTATCCCCACTGCCGAAAGGGGGAGGT
GGGCAGCCATGGGTTTGAGGGATGGGCCAGGCATCGAGAGGTCTAGGAAGAGTCTGGAGA
AAAGTGACCACACCAGGCGTGACCACGCAGCAAACCCCAGCCTGGGAAAGGCATTCCAAT
CCAAGCTCAAGCGCCAAGGAAGGGGCCACAAATGGAAACAAAAACTGTGTTAATGGCAGC
AACAACCTAAAAGCATTAAAAAGTAAACCGCAGACTGGGAAAATATTTGCAAGCATCAAA
ACAGACAAGAGTTTAACATCTTTCATATAAAAGAAGTCATTAGTGCAGGTCCTAGTTATG
TAAGAGGCACATATAATTCCCCAATGGCTCATAAACAAACAATGCTTAACCCCAGGGGTT
TAAGGAAATGAGCTTACCCCGCAGGTGAGAGCCCATTTTCCACTATCGAATTGTCACAGA
AAAAAATGGGAGGGAATTCCTTGGTGACACAGCGGGTTAAGTATCTGGCGTTGTCATTGC
AGCAGCCCTGGGTTGCTGCTGTGGCATCCGTTTGATCCCTGGCCCAGGAACTTCCTGCAG
ACTCTGCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCAGCCTGTCTGTCGCTGGCCTTGGGGACAGAAGAGATGAGAGGGGAAGGAGGAGATGA
TGCCAGGTGCCTGGGGTCCTCCAGGTTCCCAGGAAACACCCTTGATGGGTGCCCCTCTTC
TTGCCAGGCAACCATCGGCCTGATCAGGAATCTGGCCCTGTGCCCAGCCAACCACGCCCC
ACTGCAGGAGGCATCTGTCATCCCCCGCCTCGTCCAGCTGCTGGTCAAGGCCCATCAGGA
TGCCCAGCGCCATGTGGCTGCAGGCACACAGCAGCCCTACACGGATGGCGTGAGGATGGA
GGAGATTGTGGAGGGCTGCACCGGAGCCCTGCACATCCTCGCCCGGGATCCCATGAACCG
CATGGAGATCTTCCGACTCAACACCATCCCCCTGTTTGTGCAGGTGAGTCTGGGACAGGT
GGGCAGGAGAGGGTCCCTCCGAAAAATCCCTGCTTATCCCCACTGCCGAAAGGGGGAGGT
GGGCAGCCATGGGTTTGAGGGATGGGCCAGGCATCGAGAGGTCTAGGAAGAGTCTGGAGA
AAAGTGACCACACCAGGCGTGACCACGCAGCAAACCCCAGCCTGGGAAAGGCATTCCAAT
CCAAGCTCAAGCGCCAAGGAAGGGGCCACAAATGGAAACAAAAACTGTGTTAATGGCAGC
AACAACCTAAAAGCATTAAAAAGTAAACCGCAGACTGGGAAAATATTTGCAAGCATCAAA
ACAGACAAGAGTTTAACATCTTTCATATAAAAGAAGTCATTAGTGCAGGTCCTAGTTATG
TAAGAGGCACATATAATTCCCCAATGGCTCATAAACAAACAATGCTTAACCCCAGGGGTT
TAAGGAAATGAGCTTACCCCGCAGGTGAGAGCCCATTTTCCACTATCGAATTGTCACAGA
AAAAAATGGGAGGGAATTCCTTGGTGACACAGCGGGTTAAGTATCTGGCGTTGTCATTGC
AGCAGCCCTGGGTTGCTGCTGTGGCATCCGTTTGATCCCTGGCCCAGGAACTTCCTGCAG
ACTCTGCCAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50786858|ref|XP_423501.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50786858|ref|XP_423501.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               283-481, + strand, RNAz p=0.882594

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               283-481, + strand, RNAz p=0.882594

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               283-679, gnl|bosTau2|chr23 (190077-190455)
               

               
               283-679, gnl|Hg17|chr17 (37168297-37167904)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               283-679, gnl|bosTau2|chr23 (190077-190455)
               

               
               283-679, gnl|Hg17|chr17 (37168297-37167904)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cut (0.169924)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               cty (0.10408)

	283-679, gnl\|bosTau2\|chr23 (190077-190455)
	283-679, gnl\|Hg17\|chr17 (37168297-37167904)