Ss1.1-Spl1-SPL010005E09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCTCCACGAACTGCCCGGGAGTGAGCAGCTGCTCTCCGACGGCCTGACGGACGACGGAC ACCCGGACTGCCTGATCCCCGAGCCTGCCAACCAGCCAGCCTGCGCCCGGCCGCTTCCCT CCCCAGGCACACCCACCATGTGGCCCCTGTGGCTCCTGGCGTCCCTGCTGGCCCTGAGCC AGGCCCTGCCGTTTGAGCAAAAAGCCTTCTGGGACTTCACCCTGGACGACGGGCTGCCCA TGCTGAATGACGAGGAGGCTTCGGGTGCCGACTCGACCTCGGGCATCCCGGACCTGGACG CCCTCCCGCCCACCTTCAGTGCCATGTGCCCTTTCGGCTGCCACTGCCACCTGCGGGTCG TCCAGTGCTCTGACCTGGGTCTGAAGGCCGTGCCCAAGGAGATCTCGCCCGACACCACCC TGCTGGACCTGCAGAATAACGACATCTCCGAGCTCCGAAAGGACGACTTCAAAGGCCTCC AGCACCTCTACGCCCTCGTCCTGGTGAACAACAAGATTTCCAAGATCCACGCGAAGGCCT TCAGCCCCCTGAGGAAGCTGCAGAAGCTCTACATCTCCAAGAACCACCTGGTGGAGATCC CCCCCAACCTGCCCAGCTCCCTGGCGGAGCTCCGCATCCATGACAACCGCATCCGCAAGG TGCCCAAGGGCGTCTTCAGCGGGCTGCGCAACATGAACTGCATCGAGATGGGTGGGAACC CCCTGGAGAACAGCGGCTTTGAACCTGGAGCCTTCGATGGCCTGAAGCTCAACTACCTGC GCATCTCTGAGGCCAAGCTCACTGGCATCCCCAAAGACCTCCCCGAGACTCTGAACGAAC TCCATCTGGACCACAACAAGATCCAGGCTATCGAGCTGGAGGATCTGCTCCGCTATTCCA AGCTGTACAGGCTGGGCCTAGGCCACAACCAGATCCGCATGATCGAGAACGGGAGCCTGA GTTTTCTGCCCACCCTGCGGGAGCTGCACTTGGACAACAACAAGCTGTCCAGGGTGCCTG CTGGCCTCCCCGACCTCAAGCTCCTCCAGGTGGTCTACCTGCACACCAACAACATCACCA AGGTGGGCGTCAATGACTTCTGCCCGGTGGGCTTCGGGGTCAAGCGGGCCTATTACAACG GCATCAGCCTCTTCAACAACCCCGTGCCCTACTGGGAGGTGCAGCCGGCCACCTTCCGCT GCGTCACGGACCGTCTGGCCATTCAGTTTGGCAACTACAAAAAGTAGAGGCAGCCGCCGC CGCCGAGGTGGCCTGGGCCGGGTCTCTGGGGAGCACAGCGGATGTCCTGATGGGGGGGGG GGGTAGAGCAGGGGAGCGCCGGGTGCCCAGCCGCAGCCCACCAAGCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCTCCACGAACTGCCCGGGAGTGAGCAGCTGCTCTCCGACGGCCTGACGGACGACGGAC ACCCGGACTGCCTGATCCCCGAGCCTGCCAACCAGCCAGCCTGCGCCCGGCCGCTTCCCT CCCCAGGCACACCCACCATGTGGCCCCTGTGGCTCCTGGCGTCCCTGCTGGCCCTGAGCC AGGCCCTGCCGTTTGAGCAAAAAGCCTTCTGGGACTTCACCCTGGACGACGGGCTGCCCA TGCTGAATGACGAGGAGGCTTCGGGTGCCGACTCGACCTCGGGCATCCCGGACCTGGACG CCCTCCCGCCCACCTTCAGTGCCATGTGCCCTTTCGGCTGCCACTGCCACCTGCGGGTCG TCCAGTGCTCTGACCTGGGTCTGAAGGCCGTGCCCAAGGAGATCTCGCCCGACACCACCC TGCTGGACCTGCAGAATAACGACATCTCCGAGCTCCGAAAGGACGACTTCAAAGGCCTCC AGCACCTCTACGCCCTCGTCCTGGTGAACAACAAGATTTCCAAGATCCACGCGAAGGCCT TCAGCCCCCTGAGGAAGCTGCAGAAGCTCTACATCTCCAAGAACCACCTGGTGGAGATCC CCCCCAACCTGCCCAGCTCCCTGGCGGAGCTCCGCATCCATGACAACCGCATCCGCAAGG TGCCCAAGGGCGTCTTCAGCGGGCTGCGCAACATGAACTGCATCGAGATGGGTGGGAACC CCCTGGAGAACAGCGGCTTTGAACCTGGAGCCTTCGATGGCCTGAAGCTCAACTACCTGC GCATCTCTGAGGCCAAGCTCACTGGCATCCCCAAAGACCTCCCCGAGACTCTGAACGAAC TCCATCTGGACCACAACAAGATCCAGGCTATCGAGCTGGAGGATCTGCTCCGCTATTCCA AGCTGTACAGGCTGGGCCTAGGCCACAACCAGATCCGCATGATCGAGAACGGGAGCCTGA GTTTTCTGCCCACCCTGCGGGAGCTGCACTTGGACAACAACAAGCTGTCCAGGGTGCCTG CTGGCCTCCCCGACCTCAAGCTCCTCCAGGTGGTCTACCTGCACACCAACAACATCACCA AGGTGGGCGTCAATGACTTCTGCCCGGTGGGCTTCGGGGTCAAGCGGGCCTATTACAACG GCATCAGCCTCTTCAACAACCCCGTGCCCTACTGGGAGGTGCAGCCGGCCACCTTCCGCT GCGTCACGGACCGTCTGGCCATTCAGTTTGGCAACTACAAAAAGTAGAGGCAGCCGCCGC CGCCGAGGTGGCCTGGGCCGGGTCTCTGGGGAGCACAGCGGATGTCCTGATGGGGGGGGG GGGTAGAGCAGGGGAGCGCCGGGTGCCCAGCCGCAGCCCACCAAGCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 935-1052, - strand, RNAz p=0.570864 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 935-1052, - strand, RNAz p=0.570864 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 124-381, gnl|bosTau2|chrX (13758837-13758580) | |
| 124-381, gnl|Hg17|chrX (152290923-152291177) | |
| 124-381, gnl|Mm7|chrX (68877425-68877682) | |
| 483-703, gnl|bosTau2|chrX (13757436-13757217) | |
| 483-703, gnl|Hg17|chrX (152292160-152292379) | |
| 483-703, gnl|Mm7|chrX (68878589-68878808) | |
| 705-816, gnl|bosTau2|chrX (13756715-13756604) | |
| 705-816, gnl|canFam2|chrX (124375610-124375766) | |
| 705-816, gnl|danRer3|chr8 (6689206-6689091) | |
| 705-816, gnl|dasNov1|scaffold_159611 (4240-4085) | |
| 705-816, gnl|fr1|chrUn (27257166-27257291) | |
| 705-816, gnl|hg17|chrX (152292805-152292960) | |
| 705-816, gnl|Hg17|chrX (152292833-152292944) | |
| 705-816, gnl|loxAfr1|scaffold_23673 (26965-26844) | |
| 705-816, gnl|mm7|chrX (68879343-68879497) | |
| 705-816, gnl|Mm7|chrX (68879371-68879482) | |
| 705-816, gnl|monDom2|scaffold_427 (37147-37002) | |
| 705-816, gnl|oryCun1|scaffold_194152 (8813-8967) | |
| 705-816, gnl|panTro1|chrX (157571600-157571755) | |
| 705-816, gnl|rheMac2|chrX (151610853-151611008) | |
| 705-816, gnl|rn3|chrX (159463241-159463393) | |
| 705-816, gnl|tetNig1|chrUn_random (12209086-12208957) | |
| 705-816, gnl|xenTro1|scaffold_82 (827304-827432) | |
| 908-1052, gnl|bosTau2|chrX (13756155-13756011) | |
| 908-1052, gnl|Hg17|chrX (152293349-152293493) | |
| 908-1052, gnl|Mm7|chrX (68879846-68879990) | |
| 1131-1315, gnl|bosTau2|chrX (13754631-13754443) | |
| 1131-1315, gnl|canFam2|chrX (124377491-124377700) | |
| 1131-1315, gnl|danRer3|chr8 (6680214-6680007) | |
| 1131-1315, gnl|dasNov1|scaffold_83576 (4419-4618) | |
| 1131-1315, gnl|echTel1|scaffold_221277 (673-464) | |
| 1131-1315, gnl|fr1|chrUn (27258357-27258563) | |
| 1131-1315, gnl|hg17|chrX (152294545-152294754) | |
| 1131-1315, gnl|Hg17|chrX (152294634-152294819) | |
| 1131-1315, gnl|loxAfr1|scaffold_23673 (24914-24612) | |
| 1131-1315, gnl|mm7|chrX (68881240-68881449) | |
| 1131-1315, gnl|Mm7|chrX (68881329-68881507) | |
| 1131-1315, gnl|monDom2|scaffold_427 (35047-34832) | |
| 1131-1315, gnl|oryCun1|scaffold_96585 (483-692) | |
| 1131-1315, gnl|panTro1|chrX (157573867-157574076) | |
| 1131-1315, gnl|rheMac2|chrX (151612593-151612802) | |
| 1131-1315, gnl|rn3|chrX (159465439-159465648) | |
| 1131-1315, gnl|tetNig1|chrUn_random (12208263-12208056) | |
| 1131-1315, gnl|xenTro1|scaffold_82 (829992-830200) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 124-381, gnl|bosTau2|chrX (13758837-13758580) | |
| 124-381, gnl|Hg17|chrX (152290923-152291177) | |
| 124-381, gnl|Mm7|chrX (68877425-68877682) | |
| 483-703, gnl|bosTau2|chrX (13757436-13757217) | |
| 483-703, gnl|Hg17|chrX (152292160-152292379) | |
| 483-703, gnl|Mm7|chrX (68878589-68878808) | |
| 705-816, gnl|bosTau2|chrX (13756715-13756604) | |
| 705-816, gnl|canFam2|chrX (124375610-124375766) | |
| 705-816, gnl|danRer3|chr8 (6689206-6689091) | |
| 705-816, gnl|dasNov1|scaffold_159611 (4240-4085) | |
| 705-816, gnl|fr1|chrUn (27257166-27257291) | |
| 705-816, gnl|hg17|chrX (152292805-152292960) | |
| 705-816, gnl|Hg17|chrX (152292833-152292944) | |
| 705-816, gnl|loxAfr1|scaffold_23673 (26965-26844) | |
| 705-816, gnl|mm7|chrX (68879343-68879497) | |
| 705-816, gnl|Mm7|chrX (68879371-68879482) | |
| 705-816, gnl|monDom2|scaffold_427 (37147-37002) | |
| 705-816, gnl|oryCun1|scaffold_194152 (8813-8967) | |
| 705-816, gnl|panTro1|chrX (157571600-157571755) | |
| 705-816, gnl|rheMac2|chrX (151610853-151611008) | |
| 705-816, gnl|rn3|chrX (159463241-159463393) | |
| 705-816, gnl|tetNig1|chrUn_random (12209086-12208957) | |
| 705-816, gnl|xenTro1|scaffold_82 (827304-827432) | |
| 908-1052, gnl|bosTau2|chrX (13756155-13756011) | |
| 908-1052, gnl|Hg17|chrX (152293349-152293493) | |
| 908-1052, gnl|Mm7|chrX (68879846-68879990) | |
| 1131-1315, gnl|bosTau2|chrX (13754631-13754443) | |
| 1131-1315, gnl|canFam2|chrX (124377491-124377700) | |
| 1131-1315, gnl|danRer3|chr8 (6680214-6680007) | |
| 1131-1315, gnl|dasNov1|scaffold_83576 (4419-4618) | |
| 1131-1315, gnl|echTel1|scaffold_221277 (673-464) | |
| 1131-1315, gnl|fr1|chrUn (27258357-27258563) | |
| 1131-1315, gnl|hg17|chrX (152294545-152294754) | |
| 1131-1315, gnl|Hg17|chrX (152294634-152294819) | |
| 1131-1315, gnl|loxAfr1|scaffold_23673 (24914-24612) | |
| 1131-1315, gnl|mm7|chrX (68881240-68881449) | |
| 1131-1315, gnl|Mm7|chrX (68881329-68881507) | |
| 1131-1315, gnl|monDom2|scaffold_427 (35047-34832) | |
| 1131-1315, gnl|oryCun1|scaffold_96585 (483-692) | |
| 1131-1315, gnl|panTro1|chrX (157573867-157574076) | |
| 1131-1315, gnl|rheMac2|chrX (151612593-151612802) | |
| 1131-1315, gnl|rn3|chrX (159465439-159465648) | |
| 1131-1315, gnl|tetNig1|chrUn_random (12208263-12208056) | |
| 1131-1315, gnl|xenTro1|scaffold_82 (829992-830200) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| jca (1.93732) | |
| nca (0.684369) | |
| nep (0.36785) | |
| eep (0.367692) | |
| clu (0.358938) | |
| med (0.232504) | |
| nlu (0.191681) | |
| hyp (0.142837) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jca (1.93732) | |
| nca (0.684369) | |
| nep (0.36785) | |
| eep (0.367692) | |
| clu (0.358938) | |
| med (0.232504) | |
| nlu (0.191681) | |
| hyp (0.142837) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| cty (0.10408) | |
| eje (0.0988338) |