Ss1.1-Spl1-SPL010005F12.5
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GGGAGAGCAAGGGGAGGAGCCGGCCACACCGCCCAGGAAGATCCTGGACCCTACCAGTGG
GGAACCAGCTCCTGTCCTGTCCTCCCCGCCTCCTGCAGACGTCTCCACCTTCCTGGCCTT
TCCATCCCCGGAGAAGCTGCTGCGCCTCGGGCCCAAGAGTTCGGTGCTGATAGCGCAACA
GACTGACACGTCCGACCCGGAGAAGGTGGTCTCCGCCTTCCTGAAGGTGTCCTCTGTGTT
CAAGGACGAAGCCGCAGTGAGAACAGCAGTGCAGGATGCAGTAGATGCCTTGATGAAGAA
GGCCTTCGGCTCGTCGGCCTTCAACTCCAACGCCTTCCTCACCCGGCTCCTCATCCACAT
GGGTCTGCTCAAGAGTGAAGACAAGATCAAGGCCATTGCCAACCTGTACGGCCCCCTGAT
GGCGCTGAATCACATGGTGCAGCAGGACTACTTCCCCAAGGCCCTCGCACCCCTGCTGCT
GGCGTTCATGACCAAGCCCAACGGCGCCCTGGAGTCCTGCTCCTTTGCCCGCCACAACCT
GCTGCAGACGCTGTACAAGGTTTAGACGCAAAGCTGGCCTCATCCGCCCTCAGCCTGGAC
CAGTGACTTGGGAAGGGACTCAGCCGAAGGACTCTGGCCGGAAGCAGGGAGGGTCTTTGT
TGTGTGTGTGGTGTCTCCCGAGCGTGTGTCAGTGTGGTGTGTGTGTACTTGTGTGCTTCT
TGTCGGGGTTTGGGTTTTTACATCTCCTTTGCTGGACTGGCCCTGGGCCCGCTAGAGGGG
AGCTGGCCCCCAGGCAGAGGGGCTGCAAGCTGCTCTGCCATTAAACTCGCCACCATCTGA
GCGCGCTCTGCTCATCTGTGCCACAGGCTCCAGGCCCTGGTGGCTGTCCCCACCACCTTC
CTCACCCTCTGGGGCTGCACCAAAGCCTGAGGAGTGGCTGTCCCCTCCCTGTTGTGGTTT
CCTGCCCTGCCCGGGGCTGCTCACAACGGCTGCCTCTGCTATTTATCACCACTGTCACCT
GGTCCCATAGCCACCACTCTTCCTACCACCCATCCCTGCTGTGCTGACCTCTCAGCCCGA
GGGGCAGAGACTCTGGTGGGGGGGGTCTGCTGGGTGACCAGCAGAGGGCACGACCCTGAC
ACCCACATCCTGTGGACAGGAAGAGAAGCCAGTGGGCAGACACTGGGCTTGCCCAGATGG
GGCTGGCTCCAAACCAGCCGCAACCCTCCTCCAGCTACAGAGATGCCTGTGACCGGCCTG
GTGGCCTTGCTGGAGGGGCATCTGGGCAGCCCCAACCCTGTTCTCCAGCCTGGAGGCAGG
CACAGGGCCCACTGATGCCTGAGCTGCGTCTCGGGCACCCTTAAGGACCTGGGGCAGGGG
TGGCGGCTGGGCTGGGCTGGAGGTTCCCCATGACACCCTGTGCTTTCCCTTGTGCTCTTC
ATGTGTCTGGGCTGCGCCCGGGGCTTCACAAAATAAAGTCGTGCAGCAGCAAAAAAAAAA
GGGAACCTTTTCCCCCAGTGGATT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGGAGAGCAAGGGGAGGAGCCGGCCACACCGCCCAGGAAGATCCTGGACCCTACCAGTGG
GGAACCAGCTCCTGTCCTGTCCTCCCCGCCTCCTGCAGACGTCTCCACCTTCCTGGCCTT
TCCATCCCCGGAGAAGCTGCTGCGCCTCGGGCCCAAGAGTTCGGTGCTGATAGCGCAACA
GACTGACACGTCCGACCCGGAGAAGGTGGTCTCCGCCTTCCTGAAGGTGTCCTCTGTGTT
CAAGGACGAAGCCGCAGTGAGAACAGCAGTGCAGGATGCAGTAGATGCCTTGATGAAGAA
GGCCTTCGGCTCGTCGGCCTTCAACTCCAACGCCTTCCTCACCCGGCTCCTCATCCACAT
GGGTCTGCTCAAGAGTGAAGACAAGATCAAGGCCATTGCCAACCTGTACGGCCCCCTGAT
GGCGCTGAATCACATGGTGCAGCAGGACTACTTCCCCAAGGCCCTCGCACCCCTGCTGCT
GGCGTTCATGACCAAGCCCAACGGCGCCCTGGAGTCCTGCTCCTTTGCCCGCCACAACCT
GCTGCAGACGCTGTACAAGGTTTAGACGCAAAGCTGGCCTCATCCGCCCTCAGCCTGGAC
CAGTGACTTGGGAAGGGACTCAGCCGAAGGACTCTGGCCGGAAGCAGGGAGGGTCTTTGT
TGTGTGTGTGGTGTCTCCCGAGCGTGTGTCAGTGTGGTGTGTGTGTACTTGTGTGCTTCT
TGTCGGGGTTTGGGTTTTTACATCTCCTTTGCTGGACTGGCCCTGGGCCCGCTAGAGGGG
AGCTGGCCCCCAGGCAGAGGGGCTGCAAGCTGCTCTGCCATTAAACTCGCCACCATCTGA
GCGCGCTCTGCTCATCTGTGCCACAGGCTCCAGGCCCTGGTGGCTGTCCCCACCACCTTC
CTCACCCTCTGGGGCTGCACCAAAGCCTGAGGAGTGGCTGTCCCCTCCCTGTTGTGGTTT
CCTGCCCTGCCCGGGGCTGCTCACAACGGCTGCCTCTGCTATTTATCACCACTGTCACCT
GGTCCCATAGCCACCACTCTTCCTACCACCCATCCCTGCTGTGCTGACCTCTCAGCCCGA
GGGGCAGAGACTCTGGTGGGGGGGGTCTGCTGGGTGACCAGCAGAGGGCACGACCCTGAC
ACCCACATCCTGTGGACAGGAAGAGAAGCCAGTGGGCAGACACTGGGCTTGCCCAGATGG
GGCTGGCTCCAAACCAGCCGCAACCCTCCTCCAGCTACAGAGATGCCTGTGACCGGCCTG
GTGGCCTTGCTGGAGGGGCATCTGGGCAGCCCCAACCCTGTTCTCCAGCCTGGAGGCAGG
CACAGGGCCCACTGATGCCTGAGCTGCGTCTCGGGCACCCTTAAGGACCTGGGGCAGGGG
TGGCGGCTGGGCTGGGCTGGAGGTTCCCCATGACACCCTGTGCTTTCCCTTGTGCTCTTC
ATGTGTCTGGGCTGCGCCCGGGGCTTCACAAAATAAAGTCGTGCAGCAGCAAAAAAAAAA
GGGAACCTTTTCCCCCAGTGGATT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
61-181, gnl|bosTau2|chr5 (71108781-71108661) |
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61-181, gnl|canFam2|chr10 (27041328-27041193) |
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61-181, gnl|danRer3|chrNA (13582950-13583067) |
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61-181, gnl|galGal2|chr1 (46463606-46463481) |
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61-181, gnl|hg17|chr22 (39973372-39973507) |
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61-181, gnl|Hg17|chr22 (39973496-39973376) |
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61-181, gnl|loxAfr1|scaffold_55919 (7881-8017) |
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61-181, gnl|mm7|chr15 (81793878-81794013) |
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61-181, gnl|Mm7|chr15 (81794002-81793882) |
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61-181, gnl|monDom2|scaffold_130 (2682623-2682751) |
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61-181, gnl|panTro1|chr23 (40235712-40235847) |
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61-181, gnl|rheMac2|chr10 (85207463-85207598) |
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61-181, gnl|rn3|chr7 (120097142-120097277) |
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61-181, gnl|tetNig1|chrUn_random (38730864-38730735) |
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61-181, gnl|xenTro1|scaffold_246 (160973-161090) |
| |
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493-1344, gnl|bosTau2|chr5 (71103761-71102899) |
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493-1344, gnl|Hg17|chr22 (39967179-39966252) |
| |
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932-1341, gnl|bosTau2|chr13 (39873831-39874255) |
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932-1341, gnl|Hg17|chr22 (39966701-39966298) |
| |
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1371-1515, gnl|bosTau2|chr5 (71102903-71102763) |
|
1371-1515, gnl|Hg17|chr22 (39966256-39966095) |
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1371-1515, gnl|Mm7|chr15 (81788798-81788625) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
61-181, gnl|bosTau2|chr5 (71108781-71108661) |
|
61-181, gnl|canFam2|chr10 (27041328-27041193) |
|
61-181, gnl|danRer3|chrNA (13582950-13583067) |
|
61-181, gnl|galGal2|chr1 (46463606-46463481) |
|
61-181, gnl|hg17|chr22 (39973372-39973507) |
|
61-181, gnl|Hg17|chr22 (39973496-39973376) |
|
61-181, gnl|loxAfr1|scaffold_55919 (7881-8017) |
|
61-181, gnl|mm7|chr15 (81793878-81794013) |
|
61-181, gnl|Mm7|chr15 (81794002-81793882) |
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61-181, gnl|monDom2|scaffold_130 (2682623-2682751) |
|
61-181, gnl|panTro1|chr23 (40235712-40235847) |
|
61-181, gnl|rheMac2|chr10 (85207463-85207598) |
|
61-181, gnl|rn3|chr7 (120097142-120097277) |
|
61-181, gnl|tetNig1|chrUn_random (38730864-38730735) |
|
61-181, gnl|xenTro1|scaffold_246 (160973-161090) |
| |
|
493-1344, gnl|bosTau2|chr5 (71103761-71102899) |
|
493-1344, gnl|Hg17|chr22 (39967179-39966252) |
| |
|
932-1341, gnl|bosTau2|chr13 (39873831-39874255) |
|
932-1341, gnl|Hg17|chr22 (39966701-39966298) |
| |
|
1371-1515, gnl|bosTau2|chr5 (71102903-71102763) |
|
1371-1515, gnl|Hg17|chr22 (39966256-39966095) |
|
1371-1515, gnl|Mm7|chr15 (81788798-81788625) |
|
nbm (0.198649) |
|
nep (0.183925) |
|
lnt (0.142308) |
|
pla (0.133672) |
|
ebs (0.118301) |
|
cty (0.10408) |
|
eje (0.0988338) |
|
nbm (0.198649) |
|
nep (0.183925) |
|
lnt (0.142308) |
|
pla (0.133672) |
|
ebs (0.118301) |
|
cty (0.10408) |
|
eje (0.0988338) |
