Non-Coding RNA Search

Ss1.1-Spl1-SPL010005G06.5

Sequence:


               
               ACACAGAACTTAGCTGGATTCTGAGTGCAGGCTGTTCTGACATGACGTTGGCTGTGCTCT
TTGAGAGAGCAGGCAGCTGGGACCCACACAGAACTTAGCTGGATTCTGAGTGCAGGCTGT
TCTGACATGACGTTGGCTGTGCTCTTCTTAGGGGCCCTGCTGGGACTCCTCGCAGCCCAG
GGAGCTGGGGTCGACTCTCCTCATAAAAAATCAGCCACTCTGCTGCCATCCTTCACGGTG
ACACCTACGGCTACAGAAAGCACCACCAGCCACAGAACCACCACTCCAAGAACCACCACC
ACAGGCACCACCAGCCATGGGCCCACAACAGTCACTCACAATCCTGCTACCACCACCAGT
CACGGAAATGCCACAGTTCATCCAACAAGCAGCAGCACTGCCACCAGCCCAGGATCCTCC
ACCAGATCCCCCCACCCAGGGCCACCTCCACCCTCTCCAAGTCCTAGCCCGGGCTCCCAG
GAGGCCATAGGAGACTACACTTGGACGAACGGCTCCCAGCCCTGCGTCCAGCTCCAAGCC
CAGATTCAGATTCGAGTTCTGTACCCAACCCAGGGTGGAGGAGAGGCCTGGGGCATCTCT
GTACTGAACCCCAACAAAACCAAGGCCCTGGGGGGCTGTGAGGGTGCCCATCCCCACGTG
CGCCTCTCATTCCCCTACGGACAGCTCACCTTTGGATTCAAGCAGCAGCCACAGGAGAGC
ACTGTCTACCTGAACTACATGGCTGTGGAGTACAACGTGTCCTTCCCCCGGGCAGCGCAG
TGGACATTCTCAGTTCAGAATTCATCCCTTCGAGATCTCCAAACGCCTGTGGGCCGAAGC
TACAGCTGCAGAAACGCAAGCATCATTCTTTCAACAGCTTTCCACCTCGACCTGCTCTCC
CTGAAGCTACAAGCTGCTCAGCTGCCCCCCACAGGGAACTTTGGACCAAGTTTCTCTTGT
CCCAGTGACCAAACCATCCTGCTGCCTCTCATCATTGGACTGATTTTCCTTGGCCTCCTC
ATCCTGGTGCTTGTTACCTTCTGCATCATCCGGAGACGCCCACCCGCCTACCAGCCTCTG
TGAGCATCTGTTCCAACACCCAGGGCACCAGAGGGTGCCCTTATTTCTCCCCACTCAACT
GACTCTAAGACAAAGTTTCTTCTTTCTCTGTCTTGATGAACAAAAGTAGAGATAATGCAA
TCGGGAAAGATGTTTATTAAATATGATTGATTTCCCTTCCCCTACTTCCAGAGAGAGAAT
AGTAAACCTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACAGAACTTAGCTGGATTCTGAGTGCAGGCTGTTCTGACATGACGTTGGCTGTGCTCT
TTGAGAGAGCAGGCAGCTGGGACCCACACAGAACTTAGCTGGATTCTGAGTGCAGGCTGT
TCTGACATGACGTTGGCTGTGCTCTTCTTAGGGGCCCTGCTGGGACTCCTCGCAGCCCAG
GGAGCTGGGGTCGACTCTCCTCATAAAAAATCAGCCACTCTGCTGCCATCCTTCACGGTG
ACACCTACGGCTACAGAAAGCACCACCAGCCACAGAACCACCACTCCAAGAACCACCACC
ACAGGCACCACCAGCCATGGGCCCACAACAGTCACTCACAATCCTGCTACCACCACCAGT
CACGGAAATGCCACAGTTCATCCAACAAGCAGCAGCACTGCCACCAGCCCAGGATCCTCC
ACCAGATCCCCCCACCCAGGGCCACCTCCACCCTCTCCAAGTCCTAGCCCGGGCTCCCAG
GAGGCCATAGGAGACTACACTTGGACGAACGGCTCCCAGCCCTGCGTCCAGCTCCAAGCC
CAGATTCAGATTCGAGTTCTGTACCCAACCCAGGGTGGAGGAGAGGCCTGGGGCATCTCT
GTACTGAACCCCAACAAAACCAAGGCCCTGGGGGGCTGTGAGGGTGCCCATCCCCACGTG
CGCCTCTCATTCCCCTACGGACAGCTCACCTTTGGATTCAAGCAGCAGCCACAGGAGAGC
ACTGTCTACCTGAACTACATGGCTGTGGAGTACAACGTGTCCTTCCCCCGGGCAGCGCAG
TGGACATTCTCAGTTCAGAATTCATCCCTTCGAGATCTCCAAACGCCTGTGGGCCGAAGC
TACAGCTGCAGAAACGCAAGCATCATTCTTTCAACAGCTTTCCACCTCGACCTGCTCTCC
CTGAAGCTACAAGCTGCTCAGCTGCCCCCCACAGGGAACTTTGGACCAAGTTTCTCTTGT
CCCAGTGACCAAACCATCCTGCTGCCTCTCATCATTGGACTGATTTTCCTTGGCCTCCTC
ATCCTGGTGCTTGTTACCTTCTGCATCATCCGGAGACGCCCACCCGCCTACCAGCCTCTG
TGAGCATCTGTTCCAACACCCAGGGCACCAGAGGGTGCCCTTATTTCTCCCCACTCAACT
GACTCTAAGACAAAGTTTCTTCTTTCTCTGTCTTGATGAACAAAAGTAGAGATAATGCAA
TCGGGAAAGATGTTTATTAAATATGATTGATTTCCCTTCCCCTACTTCCAGAGAGAGAAT
AGTAAACCTGCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6RG76_HORSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6RG76_HORSE

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               277-586, gnl|bosTau2|chr19 (13281164-13281470)
               

               
               277-586, gnl|Hg17|chr17 (7423998-7424370)
               

               
               277-586, gnl|Mm7|chr11 (69747376-69747076)
               


               
               939-1242, gnl|bosTau2|chr19 (13282513-13282826)
               

               
               939-1242, gnl|Hg17|chr17 (7425409-7426069)
               

               
               939-1242, gnl|Mm7|chr11 (69746089-69745773)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               277-586, gnl|bosTau2|chr19 (13281164-13281470)
               

               
               277-586, gnl|Hg17|chr17 (7423998-7424370)
               

               
               277-586, gnl|Mm7|chr11 (69747376-69747076)
               


               
               939-1242, gnl|bosTau2|chr19 (13282513-13282826)
               

               
               939-1242, gnl|Hg17|chr17 (7425409-7426069)
               

               
               939-1242, gnl|Mm7|chr11 (69746089-69745773)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               csp (0.483559)
               

               
               cag (0.453583)
               

               
               cly (0.361925)
               

               
               lnt (0.284616)
               

               
               pla (0.267344)
               

               
               nmm (0.265604)
               

               
               jca (0.22792)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               jej (0.0989218)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.483559)
               

               
               cag (0.453583)
               

               
               cly (0.361925)
               

               
               lnt (0.284616)
               

               
               pla (0.267344)
               

               
               nmm (0.265604)
               

               
               jca (0.22792)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               jej (0.0989218)

	277-586, gnl\|bosTau2\|chr19 (13281164-13281470)
	277-586, gnl\|Hg17\|chr17 (7423998-7424370)
	277-586, gnl\|Mm7\|chr11 (69747376-69747076)

	939-1242, gnl\|bosTau2\|chr19 (13282513-13282826)
	939-1242, gnl\|Hg17\|chr17 (7425409-7426069)
	939-1242, gnl\|Mm7\|chr11 (69746089-69745773)

	csp (0.483559)
	cag (0.453583)
	cly (0.361925)
	lnt (0.284616)
	pla (0.267344)
	nmm (0.265604)
	jca (0.22792)
	fty (0.17584)
	duo (0.172801)
	hlv (0.139256)
	nca (0.136874)
	cov (0.132153)
	ese (0.126502)
	eep (0.122564)
	jej (0.0989218)