Ss1.1-Spl1-SPL010006D07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAATCTCCGCAGATTCCAAAGATGCGGGTCAGAGGCCCTCAAGCCATCCTCATTCTGCT GTCGGGGGCCCTGGCCCTGACCGGGACCCAGGCGGGTCCCCACTCCCTGAGGTATTTCGA CACCGCCGTGTCCCGGCCCGACCGCGGGGAGCCCCGTTTCATCGAAGTCGGCTACGTGGA CGACACGCAGTTCGTGCGGTTCGACAGCGACGCCCCGAATCCGCGGATGGAGCCTCGGGC GCCGTGGATACAGCAGGAGGGGCAGGAGTATTGGGATAGGAACACGCGGAACGCCATGGG CAACGCACAGATTTACCGAGGGAACCTGCGCACAGCTCTCGGCTACTACAACCAGAGCGA GGCCGGGTCTCACACCCTCCAGATCATGTACGGCTGCGACGTGGGACCAGACGGGCTCCT CCTCCGCGGGTACAGTCAGGACGCCTACGACGGCGCCGATTACATCGCCCTGAACGAGGA CCTGCGCTCCTGGACCGCGGCGGACACGGCGGCTCAGATCACCAAGCGCAAGTGGGAGGC GGCCAATGTGGCGGAGCAGTGGAGGAGCTACCTGCAGGGCACGTGTGTGGAGTGGCTCCA GAAATACCTGCAGATGGGGAAGGACACGCTGCAGCGCGCAGAGCCTCCAAAGACACATGT GACCCGCCACCCCAGCTCTGACCTCGGGGTCACCTTGAGGTGCTGGGCCCTGGGCTTCTA CCCTAAGGAGATCTCCCTGACCTGGCAGCGGGAGGGCCAGGACCAGAGCCAGGACATGGA GCTCGTGGAGACCAGGCCCTCAGGGGATGGGACCTTCCAGAAATGGGCGGCCCTGGTGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAATCTCCGCAGATTCCAAAGATGCGGGTCAGAGGCCCTCAAGCCATCCTCATTCTGCT GTCGGGGGCCCTGGCCCTGACCGGGACCCAGGCGGGTCCCCACTCCCTGAGGTATTTCGA CACCGCCGTGTCCCGGCCCGACCGCGGGGAGCCCCGTTTCATCGAAGTCGGCTACGTGGA CGACACGCAGTTCGTGCGGTTCGACAGCGACGCCCCGAATCCGCGGATGGAGCCTCGGGC GCCGTGGATACAGCAGGAGGGGCAGGAGTATTGGGATAGGAACACGCGGAACGCCATGGG CAACGCACAGATTTACCGAGGGAACCTGCGCACAGCTCTCGGCTACTACAACCAGAGCGA GGCCGGGTCTCACACCCTCCAGATCATGTACGGCTGCGACGTGGGACCAGACGGGCTCCT CCTCCGCGGGTACAGTCAGGACGCCTACGACGGCGCCGATTACATCGCCCTGAACGAGGA CCTGCGCTCCTGGACCGCGGCGGACACGGCGGCTCAGATCACCAAGCGCAAGTGGGAGGC GGCCAATGTGGCGGAGCAGTGGAGGAGCTACCTGCAGGGCACGTGTGTGGAGTGGCTCCA GAAATACCTGCAGATGGGGAAGGACACGCTGCAGCGCGCAGAGCCTCCAAAGACACATGT GACCCGCCACCCCAGCTCTGACCTCGGGGTCACCTTGAGGTGCTGGGCCCTGGGCTTCTA CCCTAAGGAGATCTCCCTGACCTGGCAGCGGGAGGGCCAGGACCAGAGCCAGGACATGGA GCTCGTGGAGACCAGGCCCTCAGGGGATGGGACCTTCCAGAAATGGGCGGCCCTGGTGGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 81-381, gnl|bosTau2|chr23 (23177867-23177569) | |
| 81-381, gnl|canFam2|chr12 (4024647-4024231) | |
| 81-381, gnl|dasNov1|scaffold_10933 (45706-46128) | |
| 81-381, gnl|echTel1|scaffold_220899 (10970-10534) | |
| 81-381, gnl|galGal2|chr16_random (559353-559743) | |
| 81-381, gnl|hg17|chr6 (29799374-29799799) | |
| 81-381, gnl|Hg17|chr6 (29868180-29868503) | |
| 81-381, gnl|loxAfr1|scaffold_35258 (7829-7403) | |
| 81-381, gnl|mm7|chr17 (33358692-33359086) | |
| 81-381, gnl|Mm7|chr17 (33358717-33359032) | |
| 81-381, gnl|monDom2|scaffold_42 (15573256-15573693) | |
| 81-381, gnl|oryCun1|scaffold_176700 (51383-51785) | |
| 81-381, gnl|panTro1|chr5 (30308424-30308849) | |
| 81-381, gnl|rheMac2|chr4 (29451676-29452107) | |
| 81-381, gnl|rn3|chr20 (5022277-5022669) | |
| 99-366, gnl|bosTau2|chr23 (21180741-21180474) | |
| 99-366, gnl|Hg17|chr6 (30335574-30335841) | |
| 99-366, gnl|Mm7|chr17 (33571220-33571487) | |
| 399-649, gnl|bosTau2|chr20 (36655627-36655873) | |
| 399-649, gnl|Hg17|chr6 (31347071-31346829) | |
| 399-649, gnl|Mm7|chr17 (32077846-32077606) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 81-381, gnl|bosTau2|chr23 (23177867-23177569) | |
| 81-381, gnl|canFam2|chr12 (4024647-4024231) | |
| 81-381, gnl|dasNov1|scaffold_10933 (45706-46128) | |
| 81-381, gnl|echTel1|scaffold_220899 (10970-10534) | |
| 81-381, gnl|galGal2|chr16_random (559353-559743) | |
| 81-381, gnl|hg17|chr6 (29799374-29799799) | |
| 81-381, gnl|Hg17|chr6 (29868180-29868503) | |
| 81-381, gnl|loxAfr1|scaffold_35258 (7829-7403) | |
| 81-381, gnl|mm7|chr17 (33358692-33359086) | |
| 81-381, gnl|Mm7|chr17 (33358717-33359032) | |
| 81-381, gnl|monDom2|scaffold_42 (15573256-15573693) | |
| 81-381, gnl|oryCun1|scaffold_176700 (51383-51785) | |
| 81-381, gnl|panTro1|chr5 (30308424-30308849) | |
| 81-381, gnl|rheMac2|chr4 (29451676-29452107) | |
| 81-381, gnl|rn3|chr20 (5022277-5022669) | |
| 99-366, gnl|bosTau2|chr23 (21180741-21180474) | |
| 99-366, gnl|Hg17|chr6 (30335574-30335841) | |
| 99-366, gnl|Mm7|chr17 (33571220-33571487) | |
| 399-649, gnl|bosTau2|chr20 (36655627-36655873) | |
| 399-649, gnl|Hg17|chr6 (31347071-31346829) | |
| 399-649, gnl|Mm7|chr17 (32077846-32077606) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| med (0.58126) | |
| lnt (0.426925) | |
| nco (0.323468) | |
| cga (0.279096) | |
| nmm (0.265604) | |
| col (0.195008) | |
| nje (0.16592) | |
| ute (0.132784) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| med (0.58126) | |
| lnt (0.426925) | |
| nco (0.323468) | |
| cga (0.279096) | |
| nmm (0.265604) | |
| col (0.195008) | |
| nje (0.16592) | |
| ute (0.132784) |