Ss1.1-Spl1-SPL010008E07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGCGGGACCTCAGTGGTGTGGCGGTGTGGGTGATCTGGGTGCCGGTGGACTCGTGTTGG CCCTTAGAATCCCCGCGTAGCCGCTGTCGCTTTGTCCTGCCGTTACCATGTTTCTTACCC GGTCTGAGTACGACAGGGGTGTGAACACTTTTTCTCCTGAAGGAAGATTATTTCAAGTGG AATATGCCATTGAGGCTATCAAGCTTGGTTCTACAGCCATTGGGATCCAGACATCAGAGG GTGTGTGCCTAGCTGTGGAGAAGAGAATTACCTCTCCGCTCATGGAGCCCAGCAGCATTG AGAAGATTGTAGAGATTGATGCTCACATAGGTTGTGCCATGAGTGGGCTAATTGCTGATG CTAAGACTTTAATTGATAAAGCCAGAGTGGAGACACAGAACCATTGGTTCACCTACAATG AGACAATGACAGTAGAGAGTGTGACTCAGGCTGTGTCAAATCTGGCTCTCCAGTTTGGAG AAGAGGATGCAGATCCAGGTGCCATGTCTCGTCCCTTCGGAGTAGCACTGTTATTTGGAG GAGTTGATGAAAAAGGACCCCAGCTGTTTCATATGGATCCATCTGGAACGTTTGTACAGT GTGATGCTCGAGCAATCGGCTCTGCTTCAGAGGGTGCCCAGAGCTCCTTGCAAGAAGTCT ACCACAAGTCTATGACACTGAAAGAAGCCATCAAATCTTCACTCATAATCCTCAAGCAAG TAATGGAGGAGAAACTGAATGCAACTAACATAGAGCTAGCCACAGTGCAACCTGGCCAGA ATTTCCACATGTTCACAAAGGAAGAACTCGAAGAGGTTATCAAGGACATTTAAGGAAGCG TGATCCTCAGAATTTCTTGGGGACAATTTCAGTTCTCCTAGTTGCCCTTAACTTTTATTT CCAGCTCCAATTCTTTGGAAATCTCAAGTATATGTGCATTTTTTTATGATATCTGTACAT AAAGACAGTTCTGAAATAAAGAAACATTTAAAATAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGCGGGACCTCAGTGGTGTGGCGGTGTGGGTGATCTGGGTGCCGGTGGACTCGTGTTGG CCCTTAGAATCCCCGCGTAGCCGCTGTCGCTTTGTCCTGCCGTTACCATGTTTCTTACCC GGTCTGAGTACGACAGGGGTGTGAACACTTTTTCTCCTGAAGGAAGATTATTTCAAGTGG AATATGCCATTGAGGCTATCAAGCTTGGTTCTACAGCCATTGGGATCCAGACATCAGAGG GTGTGTGCCTAGCTGTGGAGAAGAGAATTACCTCTCCGCTCATGGAGCCCAGCAGCATTG AGAAGATTGTAGAGATTGATGCTCACATAGGTTGTGCCATGAGTGGGCTAATTGCTGATG CTAAGACTTTAATTGATAAAGCCAGAGTGGAGACACAGAACCATTGGTTCACCTACAATG AGACAATGACAGTAGAGAGTGTGACTCAGGCTGTGTCAAATCTGGCTCTCCAGTTTGGAG AAGAGGATGCAGATCCAGGTGCCATGTCTCGTCCCTTCGGAGTAGCACTGTTATTTGGAG GAGTTGATGAAAAAGGACCCCAGCTGTTTCATATGGATCCATCTGGAACGTTTGTACAGT GTGATGCTCGAGCAATCGGCTCTGCTTCAGAGGGTGCCCAGAGCTCCTTGCAAGAAGTCT ACCACAAGTCTATGACACTGAAAGAAGCCATCAAATCTTCACTCATAATCCTCAAGCAAG TAATGGAGGAGAAACTGAATGCAACTAACATAGAGCTAGCCACAGTGCAACCTGGCCAGA ATTTCCACATGTTCACAAAGGAAGAACTCGAAGAGGTTATCAAGGACATTTAAGGAAGCG TGATCCTCAGAATTTCTTGGGGACAATTTCAGTTCTCCTAGTTGCCCTTAACTTTTATTT CCAGCTCCAATTCTTTGGAAATCTCAAGTATATGTGCATTTTTTTATGATATCTGTACAT AAAGACAGTTCTGAAATAAAGAAACATTTAAAATAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 202-332, + strand, RNAz p=0.98117 | |
| 793-912, - strand, RNAz p=0.755741 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 202-332, + strand, RNAz p=0.98117 | |
| 793-912, - strand, RNAz p=0.755741 |
| Aligned organism(s): 78 entry(ies) | More info |
| Aligned organism(s): 78 entry(ies) | Help | Less info |
| 1-142, gnl|bosTau2|chr3 (26024693-26024834) | |
| 1-142, gnl|Hg17|chr1 (109681106-109680960) | |
| 1-142, gnl|Mm7|chr3 (108075457-108075599) | |
| 202-332, gnl|bosTau2|chr3 (26033616-26033746) | |
| 202-332, gnl|canFam2|chr6 (45495146-45495042) | |
| 202-332, gnl|canFam2|chr6 (45494998-45495096) | |
| 202-332, gnl|danRer3|chr11 (38468269-38468167) | |
| 202-332, gnl|danRer3|chr11 (38468111-38468221) | |
| 202-332, gnl|dasNov1|scaffold_67117 (2021-1921) | |
| 202-332, gnl|echTel1|scaffold_204469 (5496-5401) | |
| 202-332, gnl|echTel1|scaffold_289808 (127004-127108) | |
| 202-332, gnl|fr1|chrUn (75228317-75228213) | |
| 202-332, gnl|galGal2|chrUn (10817687-10817583) | |
| 202-332, gnl|hg17|chr1 (109669882-109669986) | |
| 202-332, gnl|Hg17|chr1 (109670029-109669899) | |
| 202-332, gnl|hg17|chr6 (88657888-88657997) | |
| 202-332, gnl|loxAfr1|scaffold_169389 (271-372) | |
| 202-332, gnl|loxAfr1|scaffold_207363 (742-846) | |
| 202-332, gnl|mm7|chr10 (84852692-84852801) | |
| 202-332, gnl|mm7|chr3 (108083501-108083397) | |
| 202-332, gnl|Mm7|chr3 (108083352-108083482) | |
| 202-332, gnl|monDom2|scaffold_0 (7242839-7242739) | |
| 202-332, gnl|oryCun1|scaffold_198736 (93136-93240) | |
| 202-332, gnl|oryCun1|scaffold_213178 (40698-40594) | |
| 202-332, gnl|panTro1|chr1_random (4595445-4595341) | |
| 202-332, gnl|panTro1|chr5 (90360510-90360619) | |
| 202-332, gnl|rheMac2|chr1 (112472848-112472952) | |
| 202-332, gnl|rheMac2|chr4 (83809175-83809284) | |
| 202-332, gnl|rn3|chr2 (203795860-203795756) | |
| 202-332, gnl|rn3|chr5 (50838750-50838643) | |
| 202-332, gnl|tetNig1|chr11 (8565520-8565431) | |
| 202-332, gnl|tetNig1|chr11 (8565380-8565485) | |
| 202-332, gnl|xenTro1|scaffold_19 (1921425-1921513) | |
| 397-506, gnl|bosTau2|chr3 (26036948-26037057) | |
| 397-506, gnl|canFam2|chr6 (45498782-45498889) | |
| 397-506, gnl|danRer3|chr11 (38468761-38468843) | |
| 397-506, gnl|dasNov1|scaffold_67117 (5069-5176) | |
| 397-506, gnl|echTel1|scaffold_204469 (5306-5199) | |
| 397-506, gnl|Hg17|chr1 (109666850-109666741) | |
| 397-506, gnl|hg17|chr6 (88658093-88658199) | |
| 397-506, gnl|loxAfr1|scaffold_169389 (462-564) | |
| 397-506, gnl|mm7|chr10 (84852898-84853005) | |
| 397-506, gnl|oryCun1|scaffold_213178 (40502-40406) | |
| 397-506, gnl|panTro1|chr5 (90360715-90360821) | |
| 397-506, gnl|rheMac2|chr4 (83809431-83809537) | |
| 397-506, gnl|rn3|chr1 (239213563-239213456) | |
| 397-506, gnl|tetNig1|chr11 (8565912-8565994) | |
| 566-668, gnl|bosTau2|chr3 (26037848-26037950) | |
| 566-668, gnl|canFam2|chr6 (45499748-45499635) | |
| 566-668, gnl|danRer3|chr11 (38470411-38470295) | |
| 566-668, gnl|danRer3|chr11 (38469398-38469506) | |
| 566-668, gnl|dasNov1|scaffold_43121 (4338-4238) | |
| 566-668, gnl|dasNov1|scaffold_67117 (6033-5923) | |
| 566-668, gnl|echTel1|scaffold_204469 (5136-5031) | |
| 566-668, gnl|echTel1|scaffold_289808 (122307-122420) | |
| 566-668, gnl|fr1|chrUn (75229064-75228948) | |
| 566-668, gnl|galGal2|chrUn (10820352-10820243) | |
| 566-668, gnl|hg17|chr1 (109665669-109665782) | |
| 566-668, gnl|Hg17|chr1 (109665777-109665675) | |
| 566-668, gnl|hg17|chr6 (88658260-88658357) | |
| 566-668, gnl|loxAfr1|scaffold_10199 (37347-37234) | |
| 566-668, gnl|loxAfr1|scaffold_169389 (591-689) | |
| 566-668, gnl|mm7|chr10 (84853069-84853174) | |
| 566-668, gnl|mm7|chr3 (108087226-108087113) | |
| 566-668, gnl|Mm7|chr3 (108087116-108087218) | |
| 566-668, gnl|monDom2|scaffold_0 (7248216-7248103) | |
| 566-668, gnl|oryCun1|scaffold_198736 (86663-86774) | |
| 566-668, gnl|oryCun1|scaffold_213178 (40345-40235) | |
| 566-668, gnl|panTro1|chr5 (90360882-90360979) | |
| 566-668, gnl|rheMac2|chr1 (112468173-112468286) | |
| 566-668, gnl|rheMac2|chr4 (83809595-83809692) | |
| 566-668, gnl|rn3|chr1 (239213392-239213295) | |
| 566-668, gnl|rn3|chr2 (203799984-203799871) | |
| 566-668, gnl|tetNig1|chr11 (8566373-8566264) | |
| 566-668, gnl|xenTro1|scaffold_13989 (6823-6936) | |
| 754-995, gnl|bosTau2|chr3 (26045284-26045526) | |
| 754-995, gnl|Hg17|chr1 (109656756-109656514) | |
| 754-995, gnl|Mm7|chr3 (108098021-108098262) |
| Aligned organism(s): 78 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-142, gnl|bosTau2|chr3 (26024693-26024834) | |
| 1-142, gnl|Hg17|chr1 (109681106-109680960) | |
| 1-142, gnl|Mm7|chr3 (108075457-108075599) | |
| 202-332, gnl|bosTau2|chr3 (26033616-26033746) | |
| 202-332, gnl|canFam2|chr6 (45495146-45495042) | |
| 202-332, gnl|canFam2|chr6 (45494998-45495096) | |
| 202-332, gnl|danRer3|chr11 (38468269-38468167) | |
| 202-332, gnl|danRer3|chr11 (38468111-38468221) | |
| 202-332, gnl|dasNov1|scaffold_67117 (2021-1921) | |
| 202-332, gnl|echTel1|scaffold_204469 (5496-5401) | |
| 202-332, gnl|echTel1|scaffold_289808 (127004-127108) | |
| 202-332, gnl|fr1|chrUn (75228317-75228213) | |
| 202-332, gnl|galGal2|chrUn (10817687-10817583) | |
| 202-332, gnl|hg17|chr1 (109669882-109669986) | |
| 202-332, gnl|Hg17|chr1 (109670029-109669899) | |
| 202-332, gnl|hg17|chr6 (88657888-88657997) | |
| 202-332, gnl|loxAfr1|scaffold_169389 (271-372) | |
| 202-332, gnl|loxAfr1|scaffold_207363 (742-846) | |
| 202-332, gnl|mm7|chr10 (84852692-84852801) | |
| 202-332, gnl|mm7|chr3 (108083501-108083397) | |
| 202-332, gnl|Mm7|chr3 (108083352-108083482) | |
| 202-332, gnl|monDom2|scaffold_0 (7242839-7242739) | |
| 202-332, gnl|oryCun1|scaffold_198736 (93136-93240) | |
| 202-332, gnl|oryCun1|scaffold_213178 (40698-40594) | |
| 202-332, gnl|panTro1|chr1_random (4595445-4595341) | |
| 202-332, gnl|panTro1|chr5 (90360510-90360619) | |
| 202-332, gnl|rheMac2|chr1 (112472848-112472952) | |
| 202-332, gnl|rheMac2|chr4 (83809175-83809284) | |
| 202-332, gnl|rn3|chr2 (203795860-203795756) | |
| 202-332, gnl|rn3|chr5 (50838750-50838643) | |
| 202-332, gnl|tetNig1|chr11 (8565520-8565431) | |
| 202-332, gnl|tetNig1|chr11 (8565380-8565485) | |
| 202-332, gnl|xenTro1|scaffold_19 (1921425-1921513) | |
| 397-506, gnl|bosTau2|chr3 (26036948-26037057) | |
| 397-506, gnl|canFam2|chr6 (45498782-45498889) | |
| 397-506, gnl|danRer3|chr11 (38468761-38468843) | |
| 397-506, gnl|dasNov1|scaffold_67117 (5069-5176) | |
| 397-506, gnl|echTel1|scaffold_204469 (5306-5199) | |
| 397-506, gnl|Hg17|chr1 (109666850-109666741) | |
| 397-506, gnl|hg17|chr6 (88658093-88658199) | |
| 397-506, gnl|loxAfr1|scaffold_169389 (462-564) | |
| 397-506, gnl|mm7|chr10 (84852898-84853005) | |
| 397-506, gnl|oryCun1|scaffold_213178 (40502-40406) | |
| 397-506, gnl|panTro1|chr5 (90360715-90360821) | |
| 397-506, gnl|rheMac2|chr4 (83809431-83809537) | |
| 397-506, gnl|rn3|chr1 (239213563-239213456) | |
| 397-506, gnl|tetNig1|chr11 (8565912-8565994) | |
| 566-668, gnl|bosTau2|chr3 (26037848-26037950) | |
| 566-668, gnl|canFam2|chr6 (45499748-45499635) | |
| 566-668, gnl|danRer3|chr11 (38470411-38470295) | |
| 566-668, gnl|danRer3|chr11 (38469398-38469506) | |
| 566-668, gnl|dasNov1|scaffold_43121 (4338-4238) | |
| 566-668, gnl|dasNov1|scaffold_67117 (6033-5923) | |
| 566-668, gnl|echTel1|scaffold_204469 (5136-5031) | |
| 566-668, gnl|echTel1|scaffold_289808 (122307-122420) | |
| 566-668, gnl|fr1|chrUn (75229064-75228948) | |
| 566-668, gnl|galGal2|chrUn (10820352-10820243) | |
| 566-668, gnl|hg17|chr1 (109665669-109665782) | |
| 566-668, gnl|Hg17|chr1 (109665777-109665675) | |
| 566-668, gnl|hg17|chr6 (88658260-88658357) | |
| 566-668, gnl|loxAfr1|scaffold_10199 (37347-37234) | |
| 566-668, gnl|loxAfr1|scaffold_169389 (591-689) | |
| 566-668, gnl|mm7|chr10 (84853069-84853174) | |
| 566-668, gnl|mm7|chr3 (108087226-108087113) | |
| 566-668, gnl|Mm7|chr3 (108087116-108087218) | |
| 566-668, gnl|monDom2|scaffold_0 (7248216-7248103) | |
| 566-668, gnl|oryCun1|scaffold_198736 (86663-86774) | |
| 566-668, gnl|oryCun1|scaffold_213178 (40345-40235) | |
| 566-668, gnl|panTro1|chr5 (90360882-90360979) | |
| 566-668, gnl|rheMac2|chr1 (112468173-112468286) | |
| 566-668, gnl|rheMac2|chr4 (83809595-83809692) | |
| 566-668, gnl|rn3|chr1 (239213392-239213295) | |
| 566-668, gnl|rn3|chr2 (203799984-203799871) | |
| 566-668, gnl|tetNig1|chr11 (8566373-8566264) | |
| 566-668, gnl|xenTro1|scaffold_13989 (6823-6936) | |
| 754-995, gnl|bosTau2|chr3 (26045284-26045526) | |
| 754-995, gnl|Hg17|chr1 (109656756-109656514) | |
| 754-995, gnl|Mm7|chr3 (108098021-108098262) |
| Expressed library(ies): 51 entry(ies) | More info |
| Expressed library(ies): 51 entry(ies) | Help | Less info |
| csp (0.805932) | |
| tbr (0.770891) | |
| ssp (0.677599) | |
| sme (0.610874) | |
| ste (0.540833) | |
| fty (0.527519) | |
| sin (0.524843) | |
| kid (0.518941) | |
| duo (0.518403) | |
| jej (0.494609) | |
| thg (0.380373) | |
| cmu (0.372787) | |
| sag (0.36543) | |
| ebs (0.354904) | |
| rec (0.346141) | |
| cut (0.339847) | |
| cki (0.330469) | |
| isp (0.300752) | |
| bfe (0.299715) | |
| cte (0.29274) | |
| spl (0.286369) | |
| che (0.272628) | |
| pla (0.267344) | |
| ece (0.229305) | |
| spc (0.226732) | |
| tes (0.207814) | |
| hea (0.204499) | |
| aor (0.195274) | |
| col (0.195008) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| gul (0.177588) | |
| ill (0.175593) | |
| cje (0.165235) | |
| nco (0.161734) | |
| lun (0.150489) | |
| fat (0.147427) | |
| liv (0.146284) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| bla (0.124347) | |
| eru (0.120048) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| nbm (0.0993246) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 51 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.805932) | |
| tbr (0.770891) | |
| ssp (0.677599) | |
| sme (0.610874) | |
| ste (0.540833) | |
| fty (0.527519) | |
| sin (0.524843) | |
| kid (0.518941) | |
| duo (0.518403) | |
| jej (0.494609) | |
| thg (0.380373) | |
| cmu (0.372787) | |
| sag (0.36543) | |
| ebs (0.354904) | |
| rec (0.346141) | |
| cut (0.339847) | |
| cki (0.330469) | |
| isp (0.300752) | |
| bfe (0.299715) | |
| cte (0.29274) | |
| spl (0.286369) | |
| che (0.272628) | |
| pla (0.267344) | |
| ece (0.229305) | |
| spc (0.226732) | |
| tes (0.207814) | |
| hea (0.204499) | |
| aor (0.195274) | |
| col (0.195008) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| gul (0.177588) | |
| ill (0.175593) | |
| cje (0.165235) | |
| nco (0.161734) | |
| lun (0.150489) | |
| fat (0.147427) | |
| liv (0.146284) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| bla (0.124347) | |
| eru (0.120048) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| nbm (0.0993246) | |
| eje (0.0988338) | |
| ldo (0.0970026) |