Ss1.1-Spl1-SPL010009C04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGCGCAGTCTCGGTGCGGTGCGGGCTCGTGGGGAGCGCGAGGCTGCCGAGGTGCCCGCG GGAAGGAGGCCGGCCCCGGCGCGTCCCGCGCCCGAGCCTGCTGACAGCTGCAGCTGGGCT CGAGCTGTCCGCTCTAGGCTCCGCGGCCTCCGCCCCCCTCGGGCTCCCTCCCCTCCGCCC CTACCCCTCCTGCCCCGGTGCGGATCGTTTCGCAACTGCTCGCCTCTCGCCCCATGCCCG GCTGTTTTCTATTTCCCGGCCCCTCTTCTTGAGTACTTTGGCCCCTGCATTTGGGGAGAG GGGCTTGCAAGGGAGCGGCGGAGCGTCCAGAGAAGAAGGAAGCGAGGCCGGGAGGAGGAA GATCGGCGGACTGTAGGGAGGAGACCCCACGCCACCCTTTCTGGTCCTCTCCCCTCCCGC CCCGCCCCTACGCACACTCCCTCGCCGGCGAGCTACTTTCGGACGGGAAAGTGAGGGCGG CCCTGGGTGACAGCGCTGCTGGGCTAGTCCCGGGGAAGCCGCGCGTCTGCTCGCGTCTTG TCCGCCGCACTCCCAGCCAGGGGGACAGCCCGGACCGAGGATGGCTTCAACTACAACCTG CACCAGGTTCACGGACGAGTATCAGCTTTTCGAGGAGCTTGGAAAGGGGGCATTCTCAGT GGTGAGAAGATGTATGAAAATCCCTACTGGACAAGAATATGCTGCCAAAATTATCAACAC CAAAAAGCTTTCTGCTAGGGATCATCAAAAACTGGAAAGGGAAGCTAGAATCTGCCGTCT TTTGAAGCACCCCAATATTGTGCGACTTCATGACAGCATATCAGAAGAGGGCTTTCATTA CTTGGTGTTTGATTTGGTTACTGGAGGTGAACTGTTTGAAGACATAGTGGCGAGAGAATA TTACAGTGAAGCTGATGCCAGTCATTGTATACAGCAGATTCTAGAAAGTGTAAATCATTG TCACCTAAATGGCATAGTTCACAGGGACTTGAAGCCTGAGAATTTGCTTTTAGCTAGCAA ATCCAAGGGAGCAGCTGTGAAACTGGCAGACTTTGGCTTAGCCATAGAAGTTCAAGGAGA CCAGCAGGCGTGGTTCGGTTTTGCTGGCACACCTGGCTATCTTTCTCCGGAAGTTTTACG TAAAGATCCTTATGGAAAGCCAGTGGACATGTGGGCATGTGGAGTCATTCTCTACATTCT GCTGGTTGGATACCCACCCTTCTGGGATGAAGACCAACACCGACTCTATCAGCAGATCAA GGCTGGAGCTTATGATTTTCCATCACCAGAATGGGACACAGTGACTCCTGAAGCCAAAGA CCTCATCAATAAAATGCTTACTATCAACCCCGCCAAGCGTATCACAGCCTCAGAGGCACT GAAGCACCCATGGATCTGTCAACGTTCTACTGTTGCTTCCATGATGCACAGACAGGAGAC TGTAGACTGCTTGAAGAAATTCAATGCCAGAAGAAAACTAAAGGGTGCCATCTTGACAAC TATGCTGGCTACGAGGAATTTTTCAGCCAAGAGTTTGTTGAAGAAACCTGATGGAGTGAA GGAGTCAACTGAGAGTTCAAATACAACGATTGAGGATGAAGATGTGAAAGCACGAAAGCA AGAGATTATCAAAGTCACTGAACAATTGATTGAAGCTATCAACAACGGGGACTTTGAAGC TTACACAAAAATCTGTGACCCAGGCCTTACTGCTTTTGAACCTGAAGCTTTGGGTAATTT AGTGGAAGGAATGGACTTTCATCGATTCTACTTTGAAAATGCTTTGTCCAAAAGCAATAA ACCAATCCACACTATTATCCTGAACCCCCACGTTCATCTGGTAGGTGACGATGCTGCCTG CATAGCGTACATTAGGCTCACACAGTACATGGATGGCAGCGGAATGCCAAAAACAATGCA GTCCGAAGAGACACGTGTGTGGCATCGCCGGGATGGAAAGTGGCAGAATGTTCATTTTCA TCGCTCTGGGTCGCCAACAGTACCCATCAACTAAATATCAACAGTGCCACTTCTGCATTC TCTGTTTTCAAGGCACCTGGATGGTAACCCTGGGCCGTCCTCTCCTCCTCTTCATGCATG TTTCTGAGTGCATGAAGTTGTGAAGGTCCTACGTGTAATGCATATGTGATGCATCATTTG TCATATATTCCTTCCTATACATTGTTTACACTTCTAAGGGGATGTTCCATGCAAACTTCA ATCACTGTTGGCAGACAATAAGGGGAGGTCAGACAAAAAAACAAAAAAAAACCCCGCAAT ATTCTGAGTACAGCCTAGTCATCCAGTTTGTGTTCATGCCAAGACTTAAGAGACTTCAAA ATCATCGTCCTCTGAATGACCGTTTGTAAGAGAAATGTAAATTTTTAAAAACTCTTTGCT GATCATCTGTTTTAGCTTGTTTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGCGCAGTCTCGGTGCGGTGCGGGCTCGTGGGGAGCGCGAGGCTGCCGAGGTGCCCGCG GGAAGGAGGCCGGCCCCGGCGCGTCCCGCGCCCGAGCCTGCTGACAGCTGCAGCTGGGCT CGAGCTGTCCGCTCTAGGCTCCGCGGCCTCCGCCCCCCTCGGGCTCCCTCCCCTCCGCCC CTACCCCTCCTGCCCCGGTGCGGATCGTTTCGCAACTGCTCGCCTCTCGCCCCATGCCCG GCTGTTTTCTATTTCCCGGCCCCTCTTCTTGAGTACTTTGGCCCCTGCATTTGGGGAGAG GGGCTTGCAAGGGAGCGGCGGAGCGTCCAGAGAAGAAGGAAGCGAGGCCGGGAGGAGGAA GATCGGCGGACTGTAGGGAGGAGACCCCACGCCACCCTTTCTGGTCCTCTCCCCTCCCGC CCCGCCCCTACGCACACTCCCTCGCCGGCGAGCTACTTTCGGACGGGAAAGTGAGGGCGG CCCTGGGTGACAGCGCTGCTGGGCTAGTCCCGGGGAAGCCGCGCGTCTGCTCGCGTCTTG TCCGCCGCACTCCCAGCCAGGGGGACAGCCCGGACCGAGGATGGCTTCAACTACAACCTG CACCAGGTTCACGGACGAGTATCAGCTTTTCGAGGAGCTTGGAAAGGGGGCATTCTCAGT GGTGAGAAGATGTATGAAAATCCCTACTGGACAAGAATATGCTGCCAAAATTATCAACAC CAAAAAGCTTTCTGCTAGGGATCATCAAAAACTGGAAAGGGAAGCTAGAATCTGCCGTCT TTTGAAGCACCCCAATATTGTGCGACTTCATGACAGCATATCAGAAGAGGGCTTTCATTA CTTGGTGTTTGATTTGGTTACTGGAGGTGAACTGTTTGAAGACATAGTGGCGAGAGAATA TTACAGTGAAGCTGATGCCAGTCATTGTATACAGCAGATTCTAGAAAGTGTAAATCATTG TCACCTAAATGGCATAGTTCACAGGGACTTGAAGCCTGAGAATTTGCTTTTAGCTAGCAA ATCCAAGGGAGCAGCTGTGAAACTGGCAGACTTTGGCTTAGCCATAGAAGTTCAAGGAGA CCAGCAGGCGTGGTTCGGTTTTGCTGGCACACCTGGCTATCTTTCTCCGGAAGTTTTACG TAAAGATCCTTATGGAAAGCCAGTGGACATGTGGGCATGTGGAGTCATTCTCTACATTCT GCTGGTTGGATACCCACCCTTCTGGGATGAAGACCAACACCGACTCTATCAGCAGATCAA GGCTGGAGCTTATGATTTTCCATCACCAGAATGGGACACAGTGACTCCTGAAGCCAAAGA CCTCATCAATAAAATGCTTACTATCAACCCCGCCAAGCGTATCACAGCCTCAGAGGCACT GAAGCACCCATGGATCTGTCAACGTTCTACTGTTGCTTCCATGATGCACAGACAGGAGAC TGTAGACTGCTTGAAGAAATTCAATGCCAGAAGAAAACTAAAGGGTGCCATCTTGACAAC TATGCTGGCTACGAGGAATTTTTCAGCCAAGAGTTTGTTGAAGAAACCTGATGGAGTGAA GGAGTCAACTGAGAGTTCAAATACAACGATTGAGGATGAAGATGTGAAAGCACGAAAGCA AGAGATTATCAAAGTCACTGAACAATTGATTGAAGCTATCAACAACGGGGACTTTGAAGC TTACACAAAAATCTGTGACCCAGGCCTTACTGCTTTTGAACCTGAAGCTTTGGGTAATTT AGTGGAAGGAATGGACTTTCATCGATTCTACTTTGAAAATGCTTTGTCCAAAAGCAATAA ACCAATCCACACTATTATCCTGAACCCCCACGTTCATCTGGTAGGTGACGATGCTGCCTG CATAGCGTACATTAGGCTCACACAGTACATGGATGGCAGCGGAATGCCAAAAACAATGCA GTCCGAAGAGACACGTGTGTGGCATCGCCGGGATGGAAAGTGGCAGAATGTTCATTTTCA TCGCTCTGGGTCGCCAACAGTACCCATCAACTAAATATCAACAGTGCCACTTCTGCATTC TCTGTTTTCAAGGCACCTGGATGGTAACCCTGGGCCGTCCTCTCCTCCTCTTCATGCATG TTTCTGAGTGCATGAAGTTGTGAAGGTCCTACGTGTAATGCATATGTGATGCATCATTTG TCATATATTCCTTCCTATACATTGTTTACACTTCTAAGGGGATGTTCCATGCAAACTTCA ATCACTGTTGGCAGACAATAAGGGGAGGTCAGACAAAAAAACAAAAAAAAACCCCGCAAT ATTCTGAGTACAGCCTAGTCATCCAGTTTGTGTTCATGCCAAGACTTAAGAGACTTCAAA ATCATCGTCCTCTGAATGACCGTTTGTAAGAGAAATGTAAATTTTTAAAAACTCTTTGCT GATCATCTGTTTTAGCTTGTTTGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 992-2184, + strand, RNAz p=0.996293 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 992-2184, + strand, RNAz p=0.996293 |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 992-1099, gnl|bosTau2|chr6 (4434372-4434265) | |
| 992-1099, gnl|canFam2|chr32 (36223866-36224000) | |
| 992-1099, gnl|danRer3|chr10 (35543038-35543171) | |
| 992-1099, gnl|dasNov1|scaffold_34832 (3732-3594) | |
| 992-1099, gnl|echTel1|scaffold_313065 (15554-15418) | |
| 992-1099, gnl|fr1|chrUn (204543434-204543301) | |
| 992-1099, gnl|galGal2|chr4 (57170634-57170502) | |
| 992-1099, gnl|hg17|chr4 (114816092-114816227) | |
| 992-1099, gnl|Hg17|chr4 (114816206-114816099) | |
| 992-1099, gnl|loxAfr1|scaffold_42 (319096-319231) | |
| 992-1099, gnl|mm7|chr3 (126618311-126618133) | |
| 992-1099, gnl|Mm7|chr3 (126618195-126618302) | |
| 992-1099, gnl|monDom2|scaffold_9 (80318178-80318044) | |
| 992-1099, gnl|oryCun1|scaffold_213487 (43752-43621) | |
| 992-1099, gnl|panTro1|chr3 (131480838-131480973) | |
| 992-1099, gnl|rheMac2|chr5 (106394157-106394292) | |
| 992-1099, gnl|rn3|chr2 (224023551-224023398) | |
| 992-1099, gnl|tetNig1|chrUn_random (114637913-114638040) | |
| 992-1099, gnl|xenTro1|scaffold_445 (257296-257162) | |
| 1270-1398, gnl|bosTau2|chr28 (22979899-22979771) | |
| 1270-1398, gnl|canFam2|chr4 (27484042-27484191) | |
| 1270-1398, gnl|danRer3|chrUn (155596889-155597038) | |
| 1270-1398, gnl|dasNov1|scaffold_13696 (44213-44061) | |
| 1270-1398, gnl|echTel1|scaffold_257699 (7413-7261) | |
| 1270-1398, gnl|fr1|chrUn (46988623-46988767) | |
| 1270-1398, gnl|galGal2|chr6 (14898595-14898442) | |
| 1270-1398, gnl|hg17|chr10 (75276978-75277130) | |
| 1270-1398, gnl|Hg17|chr10 (75277118-75276990) | |
| 1270-1398, gnl|loxAfr1|scaffold_9468 (49591-49439) | |
| 1270-1398, gnl|mm7|chr14 (18420692-18420844) | |
| 1270-1398, gnl|Mm7|chr14 (18420832-18420704) | |
| 1270-1398, gnl|monDom2|scaffold_14 (1822608-1822759) | |
| 1270-1398, gnl|oryCun1|scaffold_201183 (3771-3911) | |
| 1270-1398, gnl|panTro1|chr8 (76515699-76515851) | |
| 1270-1398, gnl|rheMac2|chr9 (63171768-63171616) | |
| 1270-1398, gnl|rn3|chr15 (3757656-3757504) | |
| 1270-1398, gnl|tetNig1|chr17 (10671356-10671214) | |
| 1270-1398, gnl|xenTro1|scaffold_151 (226968-227110) | |
| 1785-2004, gnl|bosTau2|chr28 (22952524-22952305) | |
| 1785-2004, gnl|canFam2|chr4 (27457159-27457422) | |
| 1785-2004, gnl|danRer3|chrUn (155565944-155566182) | |
| 1785-2004, gnl|dasNov1|scaffold_8314 (86200-86461) | |
| 1785-2004, gnl|echTel1|scaffold_325083 (5459-5196) | |
| 1785-2004, gnl|fr1|chrUn (46980155-46980399) | |
| 1785-2004, gnl|galGal2|chr6 (14932400-14932136) | |
| 1785-2004, gnl|hg17|chr10 (75244779-75245035) | |
| 1785-2004, gnl|Hg17|chr10 (75245008-75244789) | |
| 1785-2004, gnl|loxAfr1|scaffold_14435 (5548-5292) | |
| 1785-2004, gnl|mm7|chr14 (18393828-18394091) | |
| 1785-2004, gnl|Mm7|chr14 (18394057-18393838) | |
| 1785-2004, gnl|monDom2|scaffold_14 (1795841-1796092) | |
| 1785-2004, gnl|oryCun1|scaffold_146505 (272-540) | |
| 1785-2004, gnl|panTro1|chr8 (76450245-76450501) | |
| 1785-2004, gnl|rheMac2|chr9 (63204454-63204198) | |
| 1785-2004, gnl|rn3|chr15 (3785453-3785185) | |
| 1785-2004, gnl|tetNig1|chr17 (10677225-10676981) | |
| 1785-2004, gnl|xenTro1|scaffold_151 (169115-169358) | |
| 2008-2422, gnl|bosTau2|chr6 (4368757-4368339) | |
| 2008-2422, gnl|Hg17|chr4 (114733278-114732866) | |
| 2008-2422, gnl|Mm7|chr3 (126680593-126681044) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 992-1099, gnl|bosTau2|chr6 (4434372-4434265) | |
| 992-1099, gnl|canFam2|chr32 (36223866-36224000) | |
| 992-1099, gnl|danRer3|chr10 (35543038-35543171) | |
| 992-1099, gnl|dasNov1|scaffold_34832 (3732-3594) | |
| 992-1099, gnl|echTel1|scaffold_313065 (15554-15418) | |
| 992-1099, gnl|fr1|chrUn (204543434-204543301) | |
| 992-1099, gnl|galGal2|chr4 (57170634-57170502) | |
| 992-1099, gnl|hg17|chr4 (114816092-114816227) | |
| 992-1099, gnl|Hg17|chr4 (114816206-114816099) | |
| 992-1099, gnl|loxAfr1|scaffold_42 (319096-319231) | |
| 992-1099, gnl|mm7|chr3 (126618311-126618133) | |
| 992-1099, gnl|Mm7|chr3 (126618195-126618302) | |
| 992-1099, gnl|monDom2|scaffold_9 (80318178-80318044) | |
| 992-1099, gnl|oryCun1|scaffold_213487 (43752-43621) | |
| 992-1099, gnl|panTro1|chr3 (131480838-131480973) | |
| 992-1099, gnl|rheMac2|chr5 (106394157-106394292) | |
| 992-1099, gnl|rn3|chr2 (224023551-224023398) | |
| 992-1099, gnl|tetNig1|chrUn_random (114637913-114638040) | |
| 992-1099, gnl|xenTro1|scaffold_445 (257296-257162) | |
| 1270-1398, gnl|bosTau2|chr28 (22979899-22979771) | |
| 1270-1398, gnl|canFam2|chr4 (27484042-27484191) | |
| 1270-1398, gnl|danRer3|chrUn (155596889-155597038) | |
| 1270-1398, gnl|dasNov1|scaffold_13696 (44213-44061) | |
| 1270-1398, gnl|echTel1|scaffold_257699 (7413-7261) | |
| 1270-1398, gnl|fr1|chrUn (46988623-46988767) | |
| 1270-1398, gnl|galGal2|chr6 (14898595-14898442) | |
| 1270-1398, gnl|hg17|chr10 (75276978-75277130) | |
| 1270-1398, gnl|Hg17|chr10 (75277118-75276990) | |
| 1270-1398, gnl|loxAfr1|scaffold_9468 (49591-49439) | |
| 1270-1398, gnl|mm7|chr14 (18420692-18420844) | |
| 1270-1398, gnl|Mm7|chr14 (18420832-18420704) | |
| 1270-1398, gnl|monDom2|scaffold_14 (1822608-1822759) | |
| 1270-1398, gnl|oryCun1|scaffold_201183 (3771-3911) | |
| 1270-1398, gnl|panTro1|chr8 (76515699-76515851) | |
| 1270-1398, gnl|rheMac2|chr9 (63171768-63171616) | |
| 1270-1398, gnl|rn3|chr15 (3757656-3757504) | |
| 1270-1398, gnl|tetNig1|chr17 (10671356-10671214) | |
| 1270-1398, gnl|xenTro1|scaffold_151 (226968-227110) | |
| 1785-2004, gnl|bosTau2|chr28 (22952524-22952305) | |
| 1785-2004, gnl|canFam2|chr4 (27457159-27457422) | |
| 1785-2004, gnl|danRer3|chrUn (155565944-155566182) | |
| 1785-2004, gnl|dasNov1|scaffold_8314 (86200-86461) | |
| 1785-2004, gnl|echTel1|scaffold_325083 (5459-5196) | |
| 1785-2004, gnl|fr1|chrUn (46980155-46980399) | |
| 1785-2004, gnl|galGal2|chr6 (14932400-14932136) | |
| 1785-2004, gnl|hg17|chr10 (75244779-75245035) | |
| 1785-2004, gnl|Hg17|chr10 (75245008-75244789) | |
| 1785-2004, gnl|loxAfr1|scaffold_14435 (5548-5292) | |
| 1785-2004, gnl|mm7|chr14 (18393828-18394091) | |
| 1785-2004, gnl|Mm7|chr14 (18394057-18393838) | |
| 1785-2004, gnl|monDom2|scaffold_14 (1795841-1796092) | |
| 1785-2004, gnl|oryCun1|scaffold_146505 (272-540) | |
| 1785-2004, gnl|panTro1|chr8 (76450245-76450501) | |
| 1785-2004, gnl|rheMac2|chr9 (63204454-63204198) | |
| 1785-2004, gnl|rn3|chr15 (3785453-3785185) | |
| 1785-2004, gnl|tetNig1|chr17 (10677225-10676981) | |
| 1785-2004, gnl|xenTro1|scaffold_151 (169115-169358) | |
| 2008-2422, gnl|bosTau2|chr6 (4368757-4368339) | |
| 2008-2422, gnl|Hg17|chr4 (114733278-114732866) | |
| 2008-2422, gnl|Mm7|chr3 (126680593-126681044) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| hea (0.817996) | |
| isp (0.601504) | |
| ldo (0.38801) | |
| rec (0.346141) | |
| duo (0.345602) | |
| hlv (0.278513) | |
| mgp (0.230681) | |
| mas (0.210305) | |
| tes (0.207814) | |
| fty (0.17584) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| ste (0.135208) | |
| cov (0.132153) | |
| ret (0.128733) | |
| thg (0.126791) | |
| bla (0.124347) | |
| clu (0.119646) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| eje (0.0988338) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (0.817996) | |
| isp (0.601504) | |
| ldo (0.38801) | |
| rec (0.346141) | |
| duo (0.345602) | |
| hlv (0.278513) | |
| mgp (0.230681) | |
| mas (0.210305) | |
| tes (0.207814) | |
| fty (0.17584) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| ste (0.135208) | |
| cov (0.132153) | |
| ret (0.128733) | |
| thg (0.126791) | |
| bla (0.124347) | |
| clu (0.119646) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| eje (0.0988338) |