Ss1.1-Spl1-SPL010009E04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGTCCCGGCTCCGCGGTGTGACTCGCGAGCTCAGCTGGTAACTATTTCTTGGGCCTCG TGCTTGGAGGAGCGAAACCTCAGTCGGGGTCCAGCCGCGTCCGCCGCAGCTGCTCAGCGC CGTCGCCATGTCGCGGTTTTTTACCACCGGTTCGGACAGCGAGTCCGAGTCGTCCCTGTC CGGGGAGGAGCTTGTCACCAAACCTGTTGGGGGTAACTACGGCAAACAACCGTTGTTGCT GAGTGAAGATGAAGAAGATACCAAGAGAGTTGTCCGAAGCGCCAAGGATAAGAGGTTTGA GGAACTGACCAACCTTATCCGGACCATCCGTAATGCCATGAAGATTCGGGATGTCACCAA GTGCCTGGAAGAGTTTGAGCTCCTGGGAAAAGCATATGGGAAAGCGAAGAGCATTGTGGA CAAGGAAGGTGTCCCCCGGTTCTATATCCGAATCTTGGCTGACCTGGAGGACTACCTTAA TGAGCTGTGGGAAGATAAGGAAGGGAAGAAGAAGATGAACAAGAATAACGCCAAGGCCCT GAGCACCCTGCGCCAGAAGATCCGAAAATACAACCGGGATTTTGAGTCCCATATTACAAA TTACAAGCAGAACCCTGAGCAGTCTGCGGATGAGGATGCTGAGAAGAATGAGGAAGATTC AGAAGGCTCTTCGGATGAGGATGAGGACGATGATGGGGTCAGTGCTGCCACCTTCCTAAA GAAGAAATCAGAAGCTCCTTCTGGGGAGAGTCGGAAGTTCCTCAAAAAAATGGAGGATGA AGATGAGGACTCTGAAGATTCAGAAGATGATGAAGATTGGGACACAGGTTCCACATCTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGTCCCGGCTCCGCGGTGTGACTCGCGAGCTCAGCTGGTAACTATTTCTTGGGCCTCG TGCTTGGAGGAGCGAAACCTCAGTCGGGGTCCAGCCGCGTCCGCCGCAGCTGCTCAGCGC CGTCGCCATGTCGCGGTTTTTTACCACCGGTTCGGACAGCGAGTCCGAGTCGTCCCTGTC CGGGGAGGAGCTTGTCACCAAACCTGTTGGGGGTAACTACGGCAAACAACCGTTGTTGCT GAGTGAAGATGAAGAAGATACCAAGAGAGTTGTCCGAAGCGCCAAGGATAAGAGGTTTGA GGAACTGACCAACCTTATCCGGACCATCCGTAATGCCATGAAGATTCGGGATGTCACCAA GTGCCTGGAAGAGTTTGAGCTCCTGGGAAAAGCATATGGGAAAGCGAAGAGCATTGTGGA CAAGGAAGGTGTCCCCCGGTTCTATATCCGAATCTTGGCTGACCTGGAGGACTACCTTAA TGAGCTGTGGGAAGATAAGGAAGGGAAGAAGAAGATGAACAAGAATAACGCCAAGGCCCT GAGCACCCTGCGCCAGAAGATCCGAAAATACAACCGGGATTTTGAGTCCCATATTACAAA TTACAAGCAGAACCCTGAGCAGTCTGCGGATGAGGATGCTGAGAAGAATGAGGAAGATTC AGAAGGCTCTTCGGATGAGGATGAGGACGATGATGGGGTCAGTGCTGCCACCTTCCTAAA GAAGAAATCAGAAGCTCCTTCTGGGGAGAGTCGGAAGTTCCTCAAAAAAATGGAGGATGA AGATGAGGACTCTGAAGATTCAGAAGATGATGAAGATTGGGACACAGGTTCCACATCTTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 103-228, gnl|bosTau2|chr25 (24977814-24977689) | |
| 103-228, gnl|canFam2|chr6 (21289618-21289503) | |
| 103-228, gnl|danRer3|chr12 (968547-968664) | |
| 103-228, gnl|dasNov1|scaffold_165349 (1617-1732) | |
| 103-228, gnl|echTel1|scaffold_170538 (5776-5890) | |
| 103-228, gnl|fr1|chrUn (113192719-113192822) | |
| 103-228, gnl|hg17|chr16 (28322334-28322450) | |
| 103-228, gnl|Hg17|chr16 (28630484-28630609) | |
| 103-228, gnl|mm7|chr7 (122662631-122662747) | |
| 103-228, gnl|Mm7|chr7 (122662771-122662637) | |
| 103-228, gnl|monDom2|scaffold_5 (119477151-119477274) | |
| 103-228, gnl|rheMac2|chr20 (27089658-27089774) | |
| 103-228, gnl|rn3|chr1 (185858966-185859082) | |
| 103-228, gnl|tetNig1|chr15 (6895974-6896079) | |
| 103-228, gnl|xenTro1|scaffold_1720 (2495-2380) | |
| 293-489, gnl|bosTau2|chr25 (24975920-24975724) | |
| 293-489, gnl|canFam2|chr6 (21291401-21291195) | |
| 293-489, gnl|danRer3|chr12 (966570-966777) | |
| 293-489, gnl|dasNov1|scaffold_218113 (527-734) | |
| 293-489, gnl|echTel1|scaffold_170538 (4051-4258) | |
| 293-489, gnl|fr1|chrUn (113192302-113192509) | |
| 293-489, gnl|hg17|chr16 (28320025-28320232) | |
| 293-489, gnl|Hg17|chr16 (28632729-28632925) | |
| 293-489, gnl|mm7|chr7 (122660970-122661177) | |
| 293-489, gnl|Mm7|chr7 (122661165-122660969) | |
| 293-489, gnl|monDom2|scaffold_5 (119472892-119473106) | |
| 293-489, gnl|oryCun1|scaffold_99379 (10787-10994) | |
| 293-489, gnl|panTro1|chr18 (29348529-29348321) | |
| 293-489, gnl|rheMac2|chr20 (27087387-27087594) | |
| 293-489, gnl|rn3|chr1 (185857251-185857457) | |
| 293-489, gnl|tetNig1|chr15 (6895541-6895748) | |
| 293-489, gnl|xenTro1|scaffold_1720 (8437-8242) | |
| 664-768, gnl|bosTau2|chr25 (24974335-24974231) | |
| 664-768, gnl|canFam2|chr6 (21292639-21292497) | |
| 664-768, gnl|danRer3|chr12 (965416-965561) | |
| 664-768, gnl|echTel1|scaffold_170538 (2629-2774) | |
| 664-768, gnl|fr1|chrUn (113191429-113191539) | |
| 664-768, gnl|hg17|chr16 (28319182-28319324) | |
| 664-768, gnl|Hg17|chr16 (28633639-28633743) | |
| 664-768, gnl|mm7|chr7 (122659543-122659685) | |
| 664-768, gnl|Mm7|chr7 (122659670-122659569) | |
| 664-768, gnl|monDom2|scaffold_5 (119471820-119471950) | |
| 664-768, gnl|oryCun1|scaffold_58337 (478-336) | |
| 664-768, gnl|rheMac2|chr20 (27086237-27086379) | |
| 664-768, gnl|rn3|chr1 (185855680-185855823) | |
| 664-768, gnl|xenTro1|scaffold_1720 (9244-9138) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 103-228, gnl|bosTau2|chr25 (24977814-24977689) | |
| 103-228, gnl|canFam2|chr6 (21289618-21289503) | |
| 103-228, gnl|danRer3|chr12 (968547-968664) | |
| 103-228, gnl|dasNov1|scaffold_165349 (1617-1732) | |
| 103-228, gnl|echTel1|scaffold_170538 (5776-5890) | |
| 103-228, gnl|fr1|chrUn (113192719-113192822) | |
| 103-228, gnl|hg17|chr16 (28322334-28322450) | |
| 103-228, gnl|Hg17|chr16 (28630484-28630609) | |
| 103-228, gnl|mm7|chr7 (122662631-122662747) | |
| 103-228, gnl|Mm7|chr7 (122662771-122662637) | |
| 103-228, gnl|monDom2|scaffold_5 (119477151-119477274) | |
| 103-228, gnl|rheMac2|chr20 (27089658-27089774) | |
| 103-228, gnl|rn3|chr1 (185858966-185859082) | |
| 103-228, gnl|tetNig1|chr15 (6895974-6896079) | |
| 103-228, gnl|xenTro1|scaffold_1720 (2495-2380) | |
| 293-489, gnl|bosTau2|chr25 (24975920-24975724) | |
| 293-489, gnl|canFam2|chr6 (21291401-21291195) | |
| 293-489, gnl|danRer3|chr12 (966570-966777) | |
| 293-489, gnl|dasNov1|scaffold_218113 (527-734) | |
| 293-489, gnl|echTel1|scaffold_170538 (4051-4258) | |
| 293-489, gnl|fr1|chrUn (113192302-113192509) | |
| 293-489, gnl|hg17|chr16 (28320025-28320232) | |
| 293-489, gnl|Hg17|chr16 (28632729-28632925) | |
| 293-489, gnl|mm7|chr7 (122660970-122661177) | |
| 293-489, gnl|Mm7|chr7 (122661165-122660969) | |
| 293-489, gnl|monDom2|scaffold_5 (119472892-119473106) | |
| 293-489, gnl|oryCun1|scaffold_99379 (10787-10994) | |
| 293-489, gnl|panTro1|chr18 (29348529-29348321) | |
| 293-489, gnl|rheMac2|chr20 (27087387-27087594) | |
| 293-489, gnl|rn3|chr1 (185857251-185857457) | |
| 293-489, gnl|tetNig1|chr15 (6895541-6895748) | |
| 293-489, gnl|xenTro1|scaffold_1720 (8437-8242) | |
| 664-768, gnl|bosTau2|chr25 (24974335-24974231) | |
| 664-768, gnl|canFam2|chr6 (21292639-21292497) | |
| 664-768, gnl|danRer3|chr12 (965416-965561) | |
| 664-768, gnl|echTel1|scaffold_170538 (2629-2774) | |
| 664-768, gnl|fr1|chrUn (113191429-113191539) | |
| 664-768, gnl|hg17|chr16 (28319182-28319324) | |
| 664-768, gnl|Hg17|chr16 (28633639-28633743) | |
| 664-768, gnl|mm7|chr7 (122659543-122659685) | |
| 664-768, gnl|Mm7|chr7 (122659670-122659569) | |
| 664-768, gnl|monDom2|scaffold_5 (119471820-119471950) | |
| 664-768, gnl|oryCun1|scaffold_58337 (478-336) | |
| 664-768, gnl|rheMac2|chr20 (27086237-27086379) | |
| 664-768, gnl|rn3|chr1 (185855680-185855823) | |
| 664-768, gnl|xenTro1|scaffold_1720 (9244-9138) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| che (0.136314) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| eep (0.122564) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (0.136314) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| eep (0.122564) |