Ss1.1-Spl1-SPL010009E11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGGGCCGCGTCTGGAGCCTAGGCGGCGGCAGCGCAGCTCACTGCCCGAGGAGAGCGGCC GGCTCGGCAGCAGCGGCGGCCAGCGAGACCCAGCCGAGGCGCGTCCCCGTCGGCCTCCCC GCGCCCCTTCCGCTCGCTCGCTCGCCCTCCTTCCCTGCGGCCGGTGCCCATGGCGTTGGC GTTGGCGGCGCTGGCGGCGGTCGAGCCGGCCTGCGGCAGCCGGTACCAGCAGTTGCAGAA TGAAGAAGAGCCTGGAGAGCCGGAGCAGGCTGCAGGGGACGCTCCGCCGCCTTATAGCAG CATCTCTGCCGAGAGCGCCGTGTATTTTGACTACAAAGACGAGTCTGGGTTTCCAAAGCC CCCATCTTACAACGTGGCTACCACACTGCCCAGTTACGACGAAGCCGAGAGAACCAAAGC CGAAGCTACTATCCCTTTGGTTCCTGGAAGAGATGAAGATTTTGTGGGTCGGGATGATTT CGATGATGCTGACCAGATGAGGATAGGAAACGACGGGGTTTTCATGTTGACTTTTTTCAT GGCATTCCTCTTTAACTGGATTGGATTTTTCCTGTCTTTTTGCCTGACCACCTCAGCGGC GGGAAGATACGGGGCCATTTCAGGATTTGGTCTCTCTCTAATTAAGTGGATCCTGATTGT CAGATTTTCCACCTATTTCCCTGGATATTTTGATGGTCAGTACTGGCTCTGGTGGGTGTT CCTGGTTTTAGGATTTCTCCTGTTTCTCAGAGGATTTATCAATTATGCGAAGGTTCGGAA GATGCCAGAAACGTTCTCCAATCTCCCCAGGACCAGAGTTCTCTTTATTTATTGAAGATG TTTTCTGGCAAAGGCCTTCCTGCGTTTATGAATTCTCTCTCAAGAAGCAAGAGGACACCT GCAGGAAGTGAATCAAGATTGGAACACAGAGGAATAATCACCTGCTTTAAAAAAATAAAG TACTGTTGACAAAGATCATTTCTCTCTCTTCGTTCCTAGGTGTACAATTTTAATAGTTAA CGCAAAATTCTGTAATCATTGAATCATTAGTGGTTAATGTTGGAAAAAGCTCTCGCAATC AAGTCTGTGATGTATTAATGATGCCTTATCTAGTATTGTCTGTAGTCCTTTTAAATAGCA TGAGCCTTGTCCCTGTAGTCAGTAGGGGGCAGTCTTGCTTTATTCATCCTCCATCTCAAA ATGAATTTGGAGTTAAATATTCTAGTGTAAGATATGTATAATGCTGGCCATTTTAAAGGG GGTTTTCTCAGAAGTTAAAACGTTGGTTATGACTGCATTTCTGCGCATAATCCATTTTGC TGTTAAAATTAGAAGTTTATTTAATTGTACCGTGAACACCTGGAAGCAAAATCATCGTGC AAAATACATTTAAGGTGTGATCCAGAATATGTTCCTAATTGGTAAATAATAAGCATTACT TTTTTAGAGTGGGCATTCTCATTTTGCAGTTCCTTATGCTGTGTTGTGTACCTGAGGGAT CGTCAAGGCGTTGACACCGTATCAAGTAGGAAGGACAAGGACACGTGCGGTCGAGTAACT GAAATGCAGTTCTTGACCCTCCGGGAAGGTCAGAGCCCCCACCCCTCTTTTCTCTTTCTT TCGTCTCCCCGATGCTTAGGCCAGGGGCTGGGGGTAGGCAGGGGATGAGGCCGCAGAAGC AAGGAAAGAGTTGGCTTGGAACTTTTGAGATGATCCCTAACATCCTGTACTCCCGGCTTT TGCAGCGTGTTTCATGTAGAGTGCTGTGCTTTGGGCCAAGTGCTAATTCACCTTGGTTTG CTGTGTCAAAGCTGTAAATACAACAGAACATTAATAAACGTCTCTTGTGTAGCAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGGGCCGCGTCTGGAGCCTAGGCGGCGGCAGCGCAGCTCACTGCCCGAGGAGAGCGGCC GGCTCGGCAGCAGCGGCGGCCAGCGAGACCCAGCCGAGGCGCGTCCCCGTCGGCCTCCCC GCGCCCCTTCCGCTCGCTCGCTCGCCCTCCTTCCCTGCGGCCGGTGCCCATGGCGTTGGC GTTGGCGGCGCTGGCGGCGGTCGAGCCGGCCTGCGGCAGCCGGTACCAGCAGTTGCAGAA TGAAGAAGAGCCTGGAGAGCCGGAGCAGGCTGCAGGGGACGCTCCGCCGCCTTATAGCAG CATCTCTGCCGAGAGCGCCGTGTATTTTGACTACAAAGACGAGTCTGGGTTTCCAAAGCC CCCATCTTACAACGTGGCTACCACACTGCCCAGTTACGACGAAGCCGAGAGAACCAAAGC CGAAGCTACTATCCCTTTGGTTCCTGGAAGAGATGAAGATTTTGTGGGTCGGGATGATTT CGATGATGCTGACCAGATGAGGATAGGAAACGACGGGGTTTTCATGTTGACTTTTTTCAT GGCATTCCTCTTTAACTGGATTGGATTTTTCCTGTCTTTTTGCCTGACCACCTCAGCGGC GGGAAGATACGGGGCCATTTCAGGATTTGGTCTCTCTCTAATTAAGTGGATCCTGATTGT CAGATTTTCCACCTATTTCCCTGGATATTTTGATGGTCAGTACTGGCTCTGGTGGGTGTT CCTGGTTTTAGGATTTCTCCTGTTTCTCAGAGGATTTATCAATTATGCGAAGGTTCGGAA GATGCCAGAAACGTTCTCCAATCTCCCCAGGACCAGAGTTCTCTTTATTTATTGAAGATG TTTTCTGGCAAAGGCCTTCCTGCGTTTATGAATTCTCTCTCAAGAAGCAAGAGGACACCT GCAGGAAGTGAATCAAGATTGGAACACAGAGGAATAATCACCTGCTTTAAAAAAATAAAG TACTGTTGACAAAGATCATTTCTCTCTCTTCGTTCCTAGGTGTACAATTTTAATAGTTAA CGCAAAATTCTGTAATCATTGAATCATTAGTGGTTAATGTTGGAAAAAGCTCTCGCAATC AAGTCTGTGATGTATTAATGATGCCTTATCTAGTATTGTCTGTAGTCCTTTTAAATAGCA TGAGCCTTGTCCCTGTAGTCAGTAGGGGGCAGTCTTGCTTTATTCATCCTCCATCTCAAA ATGAATTTGGAGTTAAATATTCTAGTGTAAGATATGTATAATGCTGGCCATTTTAAAGGG GGTTTTCTCAGAAGTTAAAACGTTGGTTATGACTGCATTTCTGCGCATAATCCATTTTGC TGTTAAAATTAGAAGTTTATTTAATTGTACCGTGAACACCTGGAAGCAAAATCATCGTGC AAAATACATTTAAGGTGTGATCCAGAATATGTTCCTAATTGGTAAATAATAAGCATTACT TTTTTAGAGTGGGCATTCTCATTTTGCAGTTCCTTATGCTGTGTTGTGTACCTGAGGGAT CGTCAAGGCGTTGACACCGTATCAAGTAGGAAGGACAAGGACACGTGCGGTCGAGTAACT GAAATGCAGTTCTTGACCCTCCGGGAAGGTCAGAGCCCCCACCCCTCTTTTCTCTTTCTT TCGTCTCCCCGATGCTTAGGCCAGGGGCTGGGGGTAGGCAGGGGATGAGGCCGCAGAAGC AAGGAAAGAGTTGGCTTGGAACTTTTGAGATGATCCCTAACATCCTGTACTCCCGGCTTT TGCAGCGTGTTTCATGTAGAGTGCTGTGCTTTGGGCCAAGTGCTAATTCACCTTGGTTTG CTGTGTCAAAGCTGTAAATACAACAGAACATTAATAAACGTCTCTTGTGTAGCAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 527-633, + strand, RNAz p=0.620727 | |
| 836-953, - strand, RNAz p=0.715613 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 527-633, + strand, RNAz p=0.620727 | |
| 836-953, - strand, RNAz p=0.715613 |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 1-235, gnl|bosTau2|chr7 (36835669-36835412) | |
| 1-235, gnl|Hg17|chr5 (141468528-141468789) | |
| 1-235, gnl|Mm7|chr18 (38795134-38795380) | |
| 323-452, gnl|bosTau2|chr7 (36802678-36802549) | |
| 323-452, gnl|canFam2|chr2 (39897636-39897786) | |
| 323-452, gnl|danRer3|chr14 (23033048-23033199) | |
| 323-452, gnl|dasNov1|scaffold_1135 (9902-10052) | |
| 323-452, gnl|echTel1|scaffold_323200 (42248-42101) | |
| 323-452, gnl|fr1|chrUn (207347708-207347856) | |
| 323-452, gnl|galGal2|chr13 (16214949-16215099) | |
| 323-452, gnl|hg17|chr5 (141491955-141492105) | |
| 323-452, gnl|Hg17|chr5 (141491963-141492092) | |
| 323-452, gnl|mm7|chr18 (38823886-38824032) | |
| 323-452, gnl|Mm7|chr18 (38823894-38824023) | |
| 323-452, gnl|monDom2|scaffold_6 (66402260-66402108) | |
| 323-452, gnl|oryCun1|scaffold_183983 (146-296) | |
| 323-452, gnl|panTro1|chr4 (148131997-148132147) | |
| 323-452, gnl|rheMac2|chr6 (138553269-138553419) | |
| 323-452, gnl|rn3|chr18 (31409153-31409299) | |
| 323-452, gnl|tetNig1|chr7 (9029464-9029609) | |
| 323-452, gnl|xenTro1|scaffold_784 (382226-382086) | |
| 527-663, gnl|bosTau2|chr7 (36797754-36797618) | |
| 527-663, gnl|canFam2|chr2 (39902593-39902757) | |
| 527-663, gnl|danRer3|chr14 (23035213-23035366) | |
| 527-663, gnl|dasNov1|scaffold_1135 (15464-15629) | |
| 527-663, gnl|echTel1|scaffold_47229 (2386-2224) | |
| 527-663, gnl|fr1|chrUn (207349235-207349380) | |
| 527-663, gnl|galGal2|chr13 (16216243-16216396) | |
| 527-663, gnl|hg17|chr5 (141497466-141497631) | |
| 527-663, gnl|Hg17|chr5 (141497470-141497606) | |
| 527-663, gnl|loxAfr1|scaffold_13246 (21347-21182) | |
| 527-663, gnl|mm7|chr18 (38828491-38828652) | |
| 527-663, gnl|Mm7|chr18 (38828493-38828629) | |
| 527-663, gnl|monDom2|scaffold_6 (66387834-66387675) | |
| 527-663, gnl|oryCun1|scaffold_195834 (167363-167526) | |
| 527-663, gnl|panTro1|chr4 (148137522-148137687) | |
| 527-663, gnl|rheMac2|chr6 (138559075-138559240) | |
| 527-663, gnl|rn3|chr18 (31414047-31414210) | |
| 527-663, gnl|tetNig1|chr7 (9031017-9031160) | |
| 527-663, gnl|xenTro1|scaffold_784 (375345-375180) | |
| 836-1751, gnl|bosTau2|chr7 (36786137-36785215) | |
| 836-1751, gnl|Hg17|chr5 (141511478-141512401) | |
| 836-1751, gnl|Mm7|chr18 (38840476-38841279) | |
| 1754-1855, gnl|bosTau2|chr7 (36785192-36785091) | |
| 1754-1855, gnl|canFam2|chr2 (39914561-39914718) | |
| 1754-1855, gnl|dasNov1|scaffold_1135 (36099-36249) | |
| 1754-1855, gnl|echTel1|scaffold_279842 (59419-59269) | |
| 1754-1855, gnl|galGal2|chr13 (16220464-16220634) | |
| 1754-1855, gnl|hg17|chr5 (141512374-141512525) | |
| 1754-1855, gnl|Hg17|chr5 (141512423-141512525) | |
| 1754-1855, gnl|loxAfr1|scaffold_13246 (7803-7653) | |
| 1754-1855, gnl|mm7|chr18 (38841257-38841387) | |
| 1754-1855, gnl|Mm7|chr18 (38841287-38841387) | |
| 1754-1855, gnl|monDom2|scaffold_6 (66374507-66374351) | |
| 1754-1855, gnl|oryCun1|scaffold_166587 (3646-3799) | |
| 1754-1855, gnl|panTro1|chr4 (148152385-148152536) | |
| 1754-1855, gnl|rheMac2|chr6 (138574783-138574934) | |
| 1754-1855, gnl|rn3|chr18 (31428252-31428383) | |
| 1754-1855, gnl|xenTro1|scaffold_784 (370210-370057) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-235, gnl|bosTau2|chr7 (36835669-36835412) | |
| 1-235, gnl|Hg17|chr5 (141468528-141468789) | |
| 1-235, gnl|Mm7|chr18 (38795134-38795380) | |
| 323-452, gnl|bosTau2|chr7 (36802678-36802549) | |
| 323-452, gnl|canFam2|chr2 (39897636-39897786) | |
| 323-452, gnl|danRer3|chr14 (23033048-23033199) | |
| 323-452, gnl|dasNov1|scaffold_1135 (9902-10052) | |
| 323-452, gnl|echTel1|scaffold_323200 (42248-42101) | |
| 323-452, gnl|fr1|chrUn (207347708-207347856) | |
| 323-452, gnl|galGal2|chr13 (16214949-16215099) | |
| 323-452, gnl|hg17|chr5 (141491955-141492105) | |
| 323-452, gnl|Hg17|chr5 (141491963-141492092) | |
| 323-452, gnl|mm7|chr18 (38823886-38824032) | |
| 323-452, gnl|Mm7|chr18 (38823894-38824023) | |
| 323-452, gnl|monDom2|scaffold_6 (66402260-66402108) | |
| 323-452, gnl|oryCun1|scaffold_183983 (146-296) | |
| 323-452, gnl|panTro1|chr4 (148131997-148132147) | |
| 323-452, gnl|rheMac2|chr6 (138553269-138553419) | |
| 323-452, gnl|rn3|chr18 (31409153-31409299) | |
| 323-452, gnl|tetNig1|chr7 (9029464-9029609) | |
| 323-452, gnl|xenTro1|scaffold_784 (382226-382086) | |
| 527-663, gnl|bosTau2|chr7 (36797754-36797618) | |
| 527-663, gnl|canFam2|chr2 (39902593-39902757) | |
| 527-663, gnl|danRer3|chr14 (23035213-23035366) | |
| 527-663, gnl|dasNov1|scaffold_1135 (15464-15629) | |
| 527-663, gnl|echTel1|scaffold_47229 (2386-2224) | |
| 527-663, gnl|fr1|chrUn (207349235-207349380) | |
| 527-663, gnl|galGal2|chr13 (16216243-16216396) | |
| 527-663, gnl|hg17|chr5 (141497466-141497631) | |
| 527-663, gnl|Hg17|chr5 (141497470-141497606) | |
| 527-663, gnl|loxAfr1|scaffold_13246 (21347-21182) | |
| 527-663, gnl|mm7|chr18 (38828491-38828652) | |
| 527-663, gnl|Mm7|chr18 (38828493-38828629) | |
| 527-663, gnl|monDom2|scaffold_6 (66387834-66387675) | |
| 527-663, gnl|oryCun1|scaffold_195834 (167363-167526) | |
| 527-663, gnl|panTro1|chr4 (148137522-148137687) | |
| 527-663, gnl|rheMac2|chr6 (138559075-138559240) | |
| 527-663, gnl|rn3|chr18 (31414047-31414210) | |
| 527-663, gnl|tetNig1|chr7 (9031017-9031160) | |
| 527-663, gnl|xenTro1|scaffold_784 (375345-375180) | |
| 836-1751, gnl|bosTau2|chr7 (36786137-36785215) | |
| 836-1751, gnl|Hg17|chr5 (141511478-141512401) | |
| 836-1751, gnl|Mm7|chr18 (38840476-38841279) | |
| 1754-1855, gnl|bosTau2|chr7 (36785192-36785091) | |
| 1754-1855, gnl|canFam2|chr2 (39914561-39914718) | |
| 1754-1855, gnl|dasNov1|scaffold_1135 (36099-36249) | |
| 1754-1855, gnl|echTel1|scaffold_279842 (59419-59269) | |
| 1754-1855, gnl|galGal2|chr13 (16220464-16220634) | |
| 1754-1855, gnl|hg17|chr5 (141512374-141512525) | |
| 1754-1855, gnl|Hg17|chr5 (141512423-141512525) | |
| 1754-1855, gnl|loxAfr1|scaffold_13246 (7803-7653) | |
| 1754-1855, gnl|mm7|chr18 (38841257-38841387) | |
| 1754-1855, gnl|Mm7|chr18 (38841287-38841387) | |
| 1754-1855, gnl|monDom2|scaffold_6 (66374507-66374351) | |
| 1754-1855, gnl|oryCun1|scaffold_166587 (3646-3799) | |
| 1754-1855, gnl|panTro1|chr4 (148152385-148152536) | |
| 1754-1855, gnl|rheMac2|chr6 (138574783-138574934) | |
| 1754-1855, gnl|rn3|chr18 (31428252-31428383) | |
| 1754-1855, gnl|xenTro1|scaffold_784 (370210-370057) |
| Expressed library(ies): 46 entry(ies) | More info |
| Expressed library(ies): 46 entry(ies) | Help | Less info |
| fbs (1.92881) | |
| ebs (1.53792) | |
| tes (0.831255) | |
| fcc (0.791139) | |
| cbr (0.767853) | |
| ece (0.687916) | |
| fhi (0.678311) | |
| hea (0.613497) | |
| med (0.465008) | |
| spl (0.429553) | |
| hyp (0.42851) | |
| csk (0.422238) | |
| fty (0.351679) | |
| ill (0.351185) | |
| ecc (0.345105) | |
| jca (0.34188) | |
| eye (0.341006) | |
| hlv (0.278513) | |
| fce (0.271592) | |
| ssp (0.271039) | |
| eep (0.245128) | |
| pgl (0.236967) | |
| jej (0.197844) | |
| eje (0.197668) | |
| ldo (0.194005) | |
| sin (0.174948) | |
| cje (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| tbr (0.154178) | |
| fat (0.147427) | |
| pty (0.142714) | |
| cst (0.140036) | |
| nca (0.136874) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| ese (0.126502) | |
| tra (0.123092) | |
| eru (0.120048) | |
| clu (0.119646) | |
| spc (0.113366) | |
| cty (0.10408) |
| Expressed library(ies): 46 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fbs (1.92881) | |
| ebs (1.53792) | |
| tes (0.831255) | |
| fcc (0.791139) | |
| cbr (0.767853) | |
| ece (0.687916) | |
| fhi (0.678311) | |
| hea (0.613497) | |
| med (0.465008) | |
| spl (0.429553) | |
| hyp (0.42851) | |
| csk (0.422238) | |
| fty (0.351679) | |
| ill (0.351185) | |
| ecc (0.345105) | |
| jca (0.34188) | |
| eye (0.341006) | |
| hlv (0.278513) | |
| fce (0.271592) | |
| ssp (0.271039) | |
| eep (0.245128) | |
| pgl (0.236967) | |
| jej (0.197844) | |
| eje (0.197668) | |
| ldo (0.194005) | |
| sin (0.174948) | |
| cje (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| tbr (0.154178) | |
| fat (0.147427) | |
| pty (0.142714) | |
| cst (0.140036) | |
| nca (0.136874) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| ese (0.126502) | |
| tra (0.123092) | |
| eru (0.120048) | |
| clu (0.119646) | |
| spc (0.113366) | |
| cty (0.10408) |