Ss1.1-Spl1-SPL010009F01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAACCTCTTTGCTCCCCTGCCCTTTGGACCAATCCTTTCTTTTGACCCTGTGGGATTGAC AGGCATTCAGACCTATAGTAATTAGAAAACCCTGAGGCCTGCCCAAAGATCGTGGGCAGG AGGCGGTTTCTCGTTTGTTGGGGCGCTTGTACGTGTGTTTCGGGGGATTAAGGGGTACAC GGGGGCGAAGCAGAACCGGCCATGGCAGCAGCGGAGGAGGAGGACGGGGGCCCCGAAGGG CCAAACCGCGAGCGGGGCGGGGCGGGCGCGACCTTCGAATGTAATATATGTCTGGAGACT GCTCGGGAAGCTGTGGTCAGCGTGTGTGGCCACCTGTACTGTTGGCCCTGTCTTCATCAG TGGCTGGAGACACGGCCAGAGCGGCAAGAGTGCCCAGTGTGTAAAGCTGGGATCAGCAGA GAAAAGGTTGTCCCCCTCTATGGGCGAGGGAGCCAGAAGCCCCAGGATCCCAGATTGAAA ACTCCACCCCGCCCGCAGGGCCAGCGACCGGCGCCTGAGAGCAGAGGGGGATTCCAGCCA TTTGGCGACACTGGGGGCTTTCACTTCTCGTTTGGTGTTGGTGCTTTTCCCTTTGGCTTT TTCACCACCGTCTTCAATACCCACGAGCCATTTCGTCGGGGGACAGGTGTGGATCTGGGA CAGGGTCACCCGGCCTCCAGCTGGCAGGACTCCCTCTTCTTGTTTCTCGCCATCTTCTTC TTTTTCTGGCTGCTCAGTATTTGAGCTGTGTCTCCCTCCTGCCCACCTCCAGCCAGAGGA GAATCAGTATTGGGGGTCCCTGCTGACCCTTCCTTACTCCCGGATCCTCGCTGCCCCCCC ACACACCCTCCATTTCTGTCGCCTAAGGCCAACCCTGGCCACTCTCTGGGAGGGTGTGGG GAGGAGGGGCAACATCTGCAGGATGGGAGAACCTTTGCTCTGGACGGACGGCTCCCTCGA GAGCAACGTAACTCCCAGCTCAGGGAGGGGGAGGACCGAAGAGAAGGCCCGGCCCTCCTC CCTCCCAATGCTTTGCTTCCCCCACACTTCTTGATTTGATGCTGACAGGTGGGCAAGGCT CCCTCTGATGCTCCCCCCACGTTCCCCTTGTTGATTTAATTTAATTTTTCCCTCCCCAGT GTCTAATGTGGGCTCCGAGTCTTCAGTGCTTCCTTCCCCTCACTACCTCCTTTCTTACAA ATTCAATAAATAAGGTGAGATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAACCTCTTTGCTCCCCTGCCCTTTGGACCAATCCTTTCTTTTGACCCTGTGGGATTGAC AGGCATTCAGACCTATAGTAATTAGAAAACCCTGAGGCCTGCCCAAAGATCGTGGGCAGG AGGCGGTTTCTCGTTTGTTGGGGCGCTTGTACGTGTGTTTCGGGGGATTAAGGGGTACAC GGGGGCGAAGCAGAACCGGCCATGGCAGCAGCGGAGGAGGAGGACGGGGGCCCCGAAGGG CCAAACCGCGAGCGGGGCGGGGCGGGCGCGACCTTCGAATGTAATATATGTCTGGAGACT GCTCGGGAAGCTGTGGTCAGCGTGTGTGGCCACCTGTACTGTTGGCCCTGTCTTCATCAG TGGCTGGAGACACGGCCAGAGCGGCAAGAGTGCCCAGTGTGTAAAGCTGGGATCAGCAGA GAAAAGGTTGTCCCCCTCTATGGGCGAGGGAGCCAGAAGCCCCAGGATCCCAGATTGAAA ACTCCACCCCGCCCGCAGGGCCAGCGACCGGCGCCTGAGAGCAGAGGGGGATTCCAGCCA TTTGGCGACACTGGGGGCTTTCACTTCTCGTTTGGTGTTGGTGCTTTTCCCTTTGGCTTT TTCACCACCGTCTTCAATACCCACGAGCCATTTCGTCGGGGGACAGGTGTGGATCTGGGA CAGGGTCACCCGGCCTCCAGCTGGCAGGACTCCCTCTTCTTGTTTCTCGCCATCTTCTTC TTTTTCTGGCTGCTCAGTATTTGAGCTGTGTCTCCCTCCTGCCCACCTCCAGCCAGAGGA GAATCAGTATTGGGGGTCCCTGCTGACCCTTCCTTACTCCCGGATCCTCGCTGCCCCCCC ACACACCCTCCATTTCTGTCGCCTAAGGCCAACCCTGGCCACTCTCTGGGAGGGTGTGGG GAGGAGGGGCAACATCTGCAGGATGGGAGAACCTTTGCTCTGGACGGACGGCTCCCTCGA GAGCAACGTAACTCCCAGCTCAGGGAGGGGGAGGACCGAAGAGAAGGCCCGGCCCTCCTC CCTCCCAATGCTTTGCTTCCCCCACACTTCTTGATTTGATGCTGACAGGTGGGCAAGGCT CCCTCTGATGCTCCCCCCACGTTCCCCTTGTTGATTTAATTTAATTTTTCCCTCCCCAGT GTCTAATGTGGGCTCCGAGTCTTCAGTGCTTCCTTCCCCTCACTACCTCCTTTCTTACAA ATTCAATAAATAAGGTGAGATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 227-344, - strand, RNAz p=0.61452 | |
| 681-1029, - strand, RNAz p=0.972179 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 227-344, - strand, RNAz p=0.61452 | |
| 681-1029, - strand, RNAz p=0.972179 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 2-344, gnl|bosTau2|chr23 (23692709-23692364) | |
| 2-344, gnl|Hg17|chr6 (32254066-32254409) | |
| 2-344, gnl|Mm7|chr17 (32688351-32687967) | |
| 358-473, gnl|bosTau2|chr23 (23691353-23691238) | |
| 358-473, gnl|canFam2|chr12 (4575391-4575269) | |
| 358-473, gnl|canFam2|chr12 (4575266-4575396) | |
| 358-473, gnl|danRer3|chrNA (140446039-140446153) | |
| 358-473, gnl|danRer3|chrNA (140446155-140446034) | |
| 358-473, gnl|dasNov1|scaffold_251088 (1110-974) | |
| 358-473, gnl|dasNov1|scaffold_251088 (981-1115) | |
| 358-473, gnl|echTel1|scaffold_319137 (842-715) | |
| 358-473, gnl|echTel1|scaffold_319137 (716-836) | |
| 358-473, gnl|fr1|chrUn (66446106-66445975) | |
| 358-473, gnl|hg17|chr6 (32255394-32255524) | |
| 358-473, gnl|Hg17|chr6 (32255403-32255518) | |
| 358-473, gnl|hg17|chr8 (38577608-38577733) | |
| 358-473, gnl|loxAfr1|scaffold_32936 (12140-12268) | |
| 358-473, gnl|loxAfr1|scaffold_32936 (12267-12135) | |
| 358-473, gnl|mm7|chr17 (32686632-32686757) | |
| 358-473, gnl|mm7|chr17 (32686760-32686627) | |
| 358-473, gnl|Mm7|chr17 (32686746-32686631) | |
| 358-473, gnl|monDom2|scaffold_42 (17150174-17150299) | |
| 358-473, gnl|monDom2|scaffold_42 (17150298-17150166) | |
| 358-473, gnl|oryCun1|scaffold_192689 (9092-9214) | |
| 358-473, gnl|oryCun1|scaffold_192689 (9220-9087) | |
| 358-473, gnl|panTro1|chr5 (32623979-32624109) | |
| 358-473, gnl|panTro1|chr7 (39962321-39962449) | |
| 358-473, gnl|rheMac2|chr4 (31801422-31801300) | |
| 358-473, gnl|rheMac2|chr4 (31801297-31801427) | |
| 358-473, gnl|rn3|chr20 (4249695-4249570) | |
| 358-473, gnl|rn3|chr20 (4249567-4249700) | |
| 358-473, gnl|tetNig1|chrUn_random (96804077-96803953) | |
| 358-473, gnl|tetNig1|chrUn_random (96803954-96804082) | |
| 358-473, gnl|xenTro1|scaffold_169 (21622-21752) | |
| 643-1224, gnl|bosTau2|chr23 (23690796-23690218) | |
| 643-1224, gnl|Hg17|chr6 (32255980-32256548) | |
| 643-1224, gnl|Mm7|chr17 (32686216-32685645) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-344, gnl|bosTau2|chr23 (23692709-23692364) | |
| 2-344, gnl|Hg17|chr6 (32254066-32254409) | |
| 2-344, gnl|Mm7|chr17 (32688351-32687967) | |
| 358-473, gnl|bosTau2|chr23 (23691353-23691238) | |
| 358-473, gnl|canFam2|chr12 (4575391-4575269) | |
| 358-473, gnl|canFam2|chr12 (4575266-4575396) | |
| 358-473, gnl|danRer3|chrNA (140446039-140446153) | |
| 358-473, gnl|danRer3|chrNA (140446155-140446034) | |
| 358-473, gnl|dasNov1|scaffold_251088 (1110-974) | |
| 358-473, gnl|dasNov1|scaffold_251088 (981-1115) | |
| 358-473, gnl|echTel1|scaffold_319137 (842-715) | |
| 358-473, gnl|echTel1|scaffold_319137 (716-836) | |
| 358-473, gnl|fr1|chrUn (66446106-66445975) | |
| 358-473, gnl|hg17|chr6 (32255394-32255524) | |
| 358-473, gnl|Hg17|chr6 (32255403-32255518) | |
| 358-473, gnl|hg17|chr8 (38577608-38577733) | |
| 358-473, gnl|loxAfr1|scaffold_32936 (12140-12268) | |
| 358-473, gnl|loxAfr1|scaffold_32936 (12267-12135) | |
| 358-473, gnl|mm7|chr17 (32686632-32686757) | |
| 358-473, gnl|mm7|chr17 (32686760-32686627) | |
| 358-473, gnl|Mm7|chr17 (32686746-32686631) | |
| 358-473, gnl|monDom2|scaffold_42 (17150174-17150299) | |
| 358-473, gnl|monDom2|scaffold_42 (17150298-17150166) | |
| 358-473, gnl|oryCun1|scaffold_192689 (9092-9214) | |
| 358-473, gnl|oryCun1|scaffold_192689 (9220-9087) | |
| 358-473, gnl|panTro1|chr5 (32623979-32624109) | |
| 358-473, gnl|panTro1|chr7 (39962321-39962449) | |
| 358-473, gnl|rheMac2|chr4 (31801422-31801300) | |
| 358-473, gnl|rheMac2|chr4 (31801297-31801427) | |
| 358-473, gnl|rn3|chr20 (4249695-4249570) | |
| 358-473, gnl|rn3|chr20 (4249567-4249700) | |
| 358-473, gnl|tetNig1|chrUn_random (96804077-96803953) | |
| 358-473, gnl|tetNig1|chrUn_random (96803954-96804082) | |
| 358-473, gnl|xenTro1|scaffold_169 (21622-21752) | |
| 643-1224, gnl|bosTau2|chr23 (23690796-23690218) | |
| 643-1224, gnl|Hg17|chr6 (32255980-32256548) | |
| 643-1224, gnl|Mm7|chr17 (32686216-32685645) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| amn (0.417711) | |
| fty (0.351679) | |
| nje (0.33184) | |
| nca (0.273748) | |
| fce (0.271592) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| col (0.195008) | |
| ill (0.175593) | |
| ton (0.1755) | |
| nco (0.161734) | |
| cli (0.152812) | |
| eli (0.151814) | |
| cag (0.151194) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| clu (0.119646) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| fty (0.351679) | |
| nje (0.33184) | |
| nca (0.273748) | |
| fce (0.271592) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| col (0.195008) | |
| ill (0.175593) | |
| ton (0.1755) | |
| nco (0.161734) | |
| cli (0.152812) | |
| eli (0.151814) | |
| cag (0.151194) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| clu (0.119646) | |
| jca (0.11396) | |
| jej (0.0989218) |