Non-Coding RNA Search

Ss1.1-Spl1-SPL010009F03.5

Sequence:


               
               CGCGGTTGCAGAACGCCGCTCTGGTTCCCTGGGTCGAAGTGACCGCCGCGGTCGCCGTGG
GGAGCTTGGCGTGGTCGCACGCGTGTTATCATGTGGCGGCTGCTGGCTCGCGCCTGCGCG
CCCCTCTTGCGAGCGCCTTTGTCAGATTCTTGGGCAGCCCCGTCCGCCACTGCTGGCTTC
AAGACGCTGCTCCCGGTGCCAACTTTTGAAGATGTTGCCATTCCTGAAAAGCCGAAGCTT
AGATTTGTTGAAAGGGTACCACTTGTGCCGAAAGTGAGAAGAGAACGTAAAAACCTGAGT
GACATACGGGGACCTTCCACTGAAGCCACTGAGTTCACAGAAGGCCGCTTTGCAATCTTG
GCGCTGGGTGGCGGTTACCTCCACTGGGGGCATTTTGAAATGATGCGCCTGACAATCAAC
CGCTCTATGGACCCCAAGAACATGTTTGCCTTGTGGCGGGTACCAGCCCCTTTCAAGCCC
ATCACCCGCAAGGGCATGGGACAGCGGATGGGGGGCGGCAAAGGTGCCATCGATCACTAC
GTGACTCCTGTGAAGGCCGGCCGCCTCATCGTAGAGATGGGCGGGCGTTGTGAATTCAAA
GAGGTACAGGGTTTCCTCGACCTGGTTGCCCACAAGTTGCCCTTCCCCGCGAAGGCTGTG
AGCCGTGAGACTCTAGAAAAGATGCGGAAAGATCAAGAGGAACGAGAACGGAACAACCAA
AACCCCTGGACCTTTGAGCGCATCGCCACTGCCAACATGCTGGGGATACGGAAAGTGCTG
AGCCCCTACGACCTGACCCACAAGGGGCGGTACTGGGGCAAGTTCTATACTCCTGAGCGT
GTGTAGTGAGGACATGACGAGGACAGATATCAGGCTGTTAAGAGAGGGAATCTACCTCTT
TATTCCTCTCAGCCAGTCCTTAAAGTCTCTGGGTAGCTCTGATGTCATAACCAAGGAGCA
GCATATGATAGATGTTTTCTGAAAAACTGTACATTATCTGTCGTTTTTATTATTAAAGTA
CATTATATTTATGTTAAAGTTTGAGTATCACCTCAAGATATACCTCTCGGAGTTCCCGTC
GTGGTGCAGCAGAAATGAATCCAACTAGGAACCATGAAGTTGTGGGTTCAGTCCCTGGCC
TTGCTCAGTGGGTTAAGGATCCGGTATTGCCATAAGCTGTGATGTAGGTCACAGATGCAG
CTCAGATCTGGCGATGCTGTGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGGTTGCAGAACGCCGCTCTGGTTCCCTGGGTCGAAGTGACCGCCGCGGTCGCCGTGG
GGAGCTTGGCGTGGTCGCACGCGTGTTATCATGTGGCGGCTGCTGGCTCGCGCCTGCGCG
CCCCTCTTGCGAGCGCCTTTGTCAGATTCTTGGGCAGCCCCGTCCGCCACTGCTGGCTTC
AAGACGCTGCTCCCGGTGCCAACTTTTGAAGATGTTGCCATTCCTGAAAAGCCGAAGCTT
AGATTTGTTGAAAGGGTACCACTTGTGCCGAAAGTGAGAAGAGAACGTAAAAACCTGAGT
GACATACGGGGACCTTCCACTGAAGCCACTGAGTTCACAGAAGGCCGCTTTGCAATCTTG
GCGCTGGGTGGCGGTTACCTCCACTGGGGGCATTTTGAAATGATGCGCCTGACAATCAAC
CGCTCTATGGACCCCAAGAACATGTTTGCCTTGTGGCGGGTACCAGCCCCTTTCAAGCCC
ATCACCCGCAAGGGCATGGGACAGCGGATGGGGGGCGGCAAAGGTGCCATCGATCACTAC
GTGACTCCTGTGAAGGCCGGCCGCCTCATCGTAGAGATGGGCGGGCGTTGTGAATTCAAA
GAGGTACAGGGTTTCCTCGACCTGGTTGCCCACAAGTTGCCCTTCCCCGCGAAGGCTGTG
AGCCGTGAGACTCTAGAAAAGATGCGGAAAGATCAAGAGGAACGAGAACGGAACAACCAA
AACCCCTGGACCTTTGAGCGCATCGCCACTGCCAACATGCTGGGGATACGGAAAGTGCTG
AGCCCCTACGACCTGACCCACAAGGGGCGGTACTGGGGCAAGTTCTATACTCCTGAGCGT
GTGTAGTGAGGACATGACGAGGACAGATATCAGGCTGTTAAGAGAGGGAATCTACCTCTT
TATTCCTCTCAGCCAGTCCTTAAAGTCTCTGGGTAGCTCTGATGTCATAACCAAGGAGCA
GCATATGATAGATGTTTTCTGAAAAACTGTACATTATCTGTCGTTTTTATTATTAAAGTA
CATTATATTTATGTTAAAGTTTGAGTATCACCTCAAGATATACCTCTCGGAGTTCCCGTC
GTGGTGCAGCAGAAATGAATCCAACTAGGAACCATGAAGTTGTGGGTTCAGTCCCTGGCC
TTGCTCAGTGGGTTAAGGATCCGGTATTGCCATAAGCTGTGATGTAGGTCACAGATGCAG
CTCAGATCTGGCGATGCTGTGGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57102768|ref|XP_534101.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57102768|ref|XP_534101.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               475-594, + strand, RNAz p=0.651913

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               475-594, + strand, RNAz p=0.651913

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC001040, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC001040, +

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               356-863, gnl|bosTau2|chr15 (53071667-53072175)
               

               
               356-863, gnl|Hg17|chr11 (59330886-59330354)
               

               
               356-863, gnl|Mm7|chr19 (11454266-11454796)
               


               
               882-1035, gnl|bosTau2|chr15 (53072168-53072317)
               

               
               882-1035, gnl|canFam2|chrUn (66956458-66956598)
               

               
               882-1035, gnl|dasNov1|scaffold_58622 (6286-6116)
               

               
               882-1035, gnl|echTel1|scaffold_220896 (3300-3490)
               

               
               882-1035, gnl|hg17|chr11 (59330180-59330344)
               

               
               882-1035, gnl|Hg17|chr11 (59330361-59330206)
               

               
               882-1035, gnl|loxAfr1|scaffold_7332 (76695-76854)
               

               
               882-1035, gnl|mm7|chr19 (11454935-11454808)
               

               
               882-1035, gnl|oryCun1|scaffold_191446 (4696-4582)
               

               
               882-1035, gnl|panTro1|chr9 (60222811-60222968)
               

               
               882-1035, gnl|rheMac2|chr14 (14110608-14110438)
               

               
               882-1035, gnl|rn3|chr1 (214708465-214708338)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               356-863, gnl|bosTau2|chr15 (53071667-53072175)
               

               
               356-863, gnl|Hg17|chr11 (59330886-59330354)
               

               
               356-863, gnl|Mm7|chr19 (11454266-11454796)
               


               
               882-1035, gnl|bosTau2|chr15 (53072168-53072317)
               

               
               882-1035, gnl|canFam2|chrUn (66956458-66956598)
               

               
               882-1035, gnl|dasNov1|scaffold_58622 (6286-6116)
               

               
               882-1035, gnl|echTel1|scaffold_220896 (3300-3490)
               

               
               882-1035, gnl|hg17|chr11 (59330180-59330344)
               

               
               882-1035, gnl|Hg17|chr11 (59330361-59330206)
               

               
               882-1035, gnl|loxAfr1|scaffold_7332 (76695-76854)
               

               
               882-1035, gnl|mm7|chr19 (11454935-11454808)
               

               
               882-1035, gnl|oryCun1|scaffold_191446 (4696-4582)
               

               
               882-1035, gnl|panTro1|chr9 (60222811-60222968)
               

               
               882-1035, gnl|rheMac2|chr14 (14110608-14110438)
               

               
               882-1035, gnl|rn3|chr1 (214708465-214708338)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               pro (0.512033)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	356-863, gnl\|bosTau2\|chr15 (53071667-53072175)
	356-863, gnl\|Hg17\|chr11 (59330886-59330354)
	356-863, gnl\|Mm7\|chr19 (11454266-11454796)

	882-1035, gnl\|bosTau2\|chr15 (53072168-53072317)
	882-1035, gnl\|canFam2\|chrUn (66956458-66956598)
	882-1035, gnl\|dasNov1\|scaffold_58622 (6286-6116)
	882-1035, gnl\|echTel1\|scaffold_220896 (3300-3490)
	882-1035, gnl\|hg17\|chr11 (59330180-59330344)
	882-1035, gnl\|Hg17\|chr11 (59330361-59330206)
	882-1035, gnl\|loxAfr1\|scaffold_7332 (76695-76854)
	882-1035, gnl\|mm7\|chr19 (11454935-11454808)
	882-1035, gnl\|oryCun1\|scaffold_191446 (4696-4582)
	882-1035, gnl\|panTro1\|chr9 (60222811-60222968)
	882-1035, gnl\|rheMac2\|chr14 (14110608-14110438)
	882-1035, gnl\|rn3\|chr1 (214708465-214708338)

	pro (0.512033)
	fcc (0.197785)
	ldo (0.194005)
	rec (0.17307)
	tbr (0.154178)
	lun (0.150489)
	pty (0.142714)
	ssp (0.13552)
	bla (0.124347)
	ecc (0.115035)
	nbm (0.0993246)
	eje (0.0988338)