Non-Coding RNA Search

Ss1.1-Spl1-SPL010009G12.5

Sequence:


               
               AAGAGACAGAGGACACAGAGGCCAAGGAAGAAGAGTCCAAAGATCAGGAGGAGGATGAGA
GTAAGGAGGAAGTTAAAGGTGTGGAGGAAACAGGAGTAGAGCAGGGTAAGGACAAGGAGA
AGGAAAGAAATACTGAGAGAGAGGACGAGGCTGAGGAAGGAGATGAAGCTCAAGTAGAAG
CCAGAAGGGAGCCAGAGCATGGCACCCAGGAAAAGCAAATTGCTGGGGAGAGCTGGGAGG
CTGTACACAAAGAAGAGGCTGAAAGAGAAGATGAGGTCAAAGGACAGAGGGGGAATGAGG
ACCAAGAGACAAGAGAAGATCAAGGAGATGGTGAAGACAGCAGAATCCCAGAAGCAGCAG
CTGAAGGAAGAGCAGGGGAGGTCAGTCAGGAACAGGAGACTGGAGATGGAGAAGCTGAGG
GAGACCAGAGGGCTGCAAGTGACCATTTAGAAGAGGGCTCCCTCCCTGACGGGTCAGATA
TAGAGTCTTTGGAGGTTGACAGTGCCAGAGAGGGCAGTGCCCAGTCCACTGAGACAGACC
AGGCAGCCCCACAGCCACCCCAGTCAGAGGAGATGGAGCCTGAGGGGCAGCCGAGTCCCC
TTGGCGCGGCTGGTGGTGTGGGCATGCGCCTGGCTTCCACCCTGGTTCAGGTCCAACAGG
TCCGCTCTGTGCCTGTGGTGCCTCCCAAACCACAGTTTGCCAGAATGCCCACTGCAATGT
GTGGCAAGATCCACGTGGCACCAGCAAACCCATGCCCGAGGCCTGGCCGGCTTGATGGGA
CTCCTGGGGAAAGGGCCTGGGGTACCAGAGCTTCCCGCTCCTCTTGGAGGAATGGGGGCA
GTCTTTCCTTTGATGCTGCTGTTGCCCTGGCCCGGGACCGCCAGAGGACTGAAGTTCAGA
GCGTTCGGCGGACCCAGACCTGTACTGGGGCTGGGGACTACAGCCTCATCCCTAAAACCT
CCCCCTATAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAGACAGAGGACACAGAGGCCAAGGAAGAAGAGTCCAAAGATCAGGAGGAGGATGAGA
GTAAGGAGGAAGTTAAAGGTGTGGAGGAAACAGGAGTAGAGCAGGGTAAGGACAAGGAGA
AGGAAAGAAATACTGAGAGAGAGGACGAGGCTGAGGAAGGAGATGAAGCTCAAGTAGAAG
CCAGAAGGGAGCCAGAGCATGGCACCCAGGAAAAGCAAATTGCTGGGGAGAGCTGGGAGG
CTGTACACAAAGAAGAGGCTGAAAGAGAAGATGAGGTCAAAGGACAGAGGGGGAATGAGG
ACCAAGAGACAAGAGAAGATCAAGGAGATGGTGAAGACAGCAGAATCCCAGAAGCAGCAG
CTGAAGGAAGAGCAGGGGAGGTCAGTCAGGAACAGGAGACTGGAGATGGAGAAGCTGAGG
GAGACCAGAGGGCTGCAAGTGACCATTTAGAAGAGGGCTCCCTCCCTGACGGGTCAGATA
TAGAGTCTTTGGAGGTTGACAGTGCCAGAGAGGGCAGTGCCCAGTCCACTGAGACAGACC
AGGCAGCCCCACAGCCACCCCAGTCAGAGGAGATGGAGCCTGAGGGGCAGCCGAGTCCCC
TTGGCGCGGCTGGTGGTGTGGGCATGCGCCTGGCTTCCACCCTGGTTCAGGTCCAACAGG
TCCGCTCTGTGCCTGTGGTGCCTCCCAAACCACAGTTTGCCAGAATGCCCACTGCAATGT
GTGGCAAGATCCACGTGGCACCAGCAAACCCATGCCCGAGGCCTGGCCGGCTTGATGGGA
CTCCTGGGGAAAGGGCCTGGGGTACCAGAGCTTCCCGCTCCTCTTGGAGGAATGGGGGCA
GTCTTTCCTTTGATGCTGCTGTTGCCCTGGCCCGGGACCGCCAGAGGACTGAAGTTCAGA
GCGTTCGGCGGACCCAGACCTGTACTGGGGCTGGGGACTACAGCCTCATCCCTAAAACCT
CCCCCTATAGCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               474-606, - strand, RNAz p=0.993911

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               474-606, - strand, RNAz p=0.993911

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-971, gnl|bosTau2|chr3 (7746834-7747801)
               

               
               1-971, gnl|Hg17|chr1 (157831752-157830773)
               

               
               1-971, gnl|Mm7|chr1 (171378266-171379239)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-971, gnl|bosTau2|chr3 (7746834-7747801)
               

               
               1-971, gnl|Hg17|chr1 (157831752-157830773)
               

               
               1-971, gnl|Mm7|chr1 (171378266-171379239)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fty (0.351679)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.351679)
               

               
               med (0.116252)

	1-971, gnl\|bosTau2\|chr3 (7746834-7747801)
	1-971, gnl\|Hg17\|chr1 (157831752-157830773)
	1-971, gnl\|Mm7\|chr1 (171378266-171379239)