Non-Coding RNA Search

Ss1.1-Spl1-SPL010010E02.5

Sequence:


               
               TTGCGCTGGCCCAATGTCAAGGGAGGAGGGGGCTCACCCAGGGCTCCTGTAGCTCAAGGG
GCAGGCCTGAGCCCTGCGCCCGCCCCGAGTCCGTCCGGCCCCCGACGGGGCGCCCCATCC
CAAGGGGCTCCGCACTGGCCCCCACCGAGGCAGGGGACCTGACAGGCTCGGAGCTCGGCT
GGATGTTACAGGCGTGCAAAATGGAAGGGTTTCCCCTCGTCCCCCCTCCATCAGAAGACC
TGGTTCCCTATGACACGGATCTCTACCAACGCCAAACGCATGAATATTACCCGTATCTCA
GCAGTGATGGAGAAAGCCACAGCGACCATTACTGGGACTTCCACCCGCACCACGTGCACA
GCGAGTTCGAGAGCTTCGCCGAGAACCACTTCACGGAGCTGCAGAGTGTGCAGCCCCCCC
AGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAGCAGATGCACGTGCTCGACACCCCCA
TGGCACCCACCCATGCCAGCCTCGGCCACCAGGTTTCCTACCTACCCCGGATGTGCCTCC
CGTACCCCTCCCTGTCCCCGGCCCAGCCCAGCTCGGATGAGGAGGAGGGCGAGCGGCAGA
GCCCCCCACTGGAAGTGTCTGACGGGGAGGCCGACGGCCTGGAGCCAGGGCCTGGCCTCC
TGCACGGGGAGACAGGCAGCAAGAAGAAGATCCGCCTGTATCAGTTCCTGCTGGACCTGC
TGCGCAGCGGCGACATGAAGGACAGCATCTGGTGGGTGGACAAGGACAAGGGCACCTTCC
AGTTTTCGTCCAAGCACAAGGAGGCGCTGGCGCACCGCTGGGGCATCCAGAAGGGCAACC
GCAAGAAGATGACCTACCAGAAGATGGCTCGCGCGCTGCGCAACTACGGCAAGACGGGCG
AGGTCAAGAAGGTCAAGAAGAAGCTCACCTACCAGTTCAGCGGGGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCGCTGGCCCAATGTCAAGGGAGGAGGGGGCTCACCCAGGGCTCCTGTAGCTCAAGGG
GCAGGCCTGAGCCCTGCGCCCGCCCCGAGTCCGTCCGGCCCCCGACGGGGCGCCCCATCC
CAAGGGGCTCCGCACTGGCCCCCACCGAGGCAGGGGACCTGACAGGCTCGGAGCTCGGCT
GGATGTTACAGGCGTGCAAAATGGAAGGGTTTCCCCTCGTCCCCCCTCCATCAGAAGACC
TGGTTCCCTATGACACGGATCTCTACCAACGCCAAACGCATGAATATTACCCGTATCTCA
GCAGTGATGGAGAAAGCCACAGCGACCATTACTGGGACTTCCACCCGCACCACGTGCACA
GCGAGTTCGAGAGCTTCGCCGAGAACCACTTCACGGAGCTGCAGAGTGTGCAGCCCCCCC
AGCTGCAGCAGCTCTACCGCCACATGGAGCTGGAGCAGATGCACGTGCTCGACACCCCCA
TGGCACCCACCCATGCCAGCCTCGGCCACCAGGTTTCCTACCTACCCCGGATGTGCCTCC
CGTACCCCTCCCTGTCCCCGGCCCAGCCCAGCTCGGATGAGGAGGAGGGCGAGCGGCAGA
GCCCCCCACTGGAAGTGTCTGACGGGGAGGCCGACGGCCTGGAGCCAGGGCCTGGCCTCC
TGCACGGGGAGACAGGCAGCAAGAAGAAGATCCGCCTGTATCAGTTCCTGCTGGACCTGC
TGCGCAGCGGCGACATGAAGGACAGCATCTGGTGGGTGGACAAGGACAAGGGCACCTTCC
AGTTTTCGTCCAAGCACAAGGAGGCGCTGGCGCACCGCTGGGGCATCCAGAAGGGCAACC
GCAAGAAGATGACCTACCAGAAGATGGCTCGCGCGCTGCGCAACTACGGCAAGACGGGCG
AGGTCAAGAAGGTCAAGAAGAAGCTCACCTACCAGTTCAGCGGGGAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|49274645|ref|NP_001001865.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|49274645|ref|NP_001001865.1|

ncRNA annotation: 1 entry(ies)

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ncRNA annotation: 1 entry(ies)

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               53-200, RF00232;Spi-1; (AY600299.1/4-151), blast E-value=0

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               53-200, RF00232;Spi-1; (AY600299.1/4-151), blast E-value=0

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-227, gnl|bosTau2|chr15 (48926924-48927165)
               

               
               1-227, gnl|canFam2|chr18 (45288389-45288190)
               

               
               1-227, gnl|dasNov1|scaffold_259404 (4037-3839)
               

               
               1-227, gnl|hg17|chr11 (47356426-47356624)
               

               
               1-227, gnl|Hg17|chr11 (47356662-47356436)
               

               
               1-227, gnl|mm7|chr2 (90947721-90947521)
               

               
               1-227, gnl|Mm7|chr2 (90947481-90947709)
               

               
               1-227, gnl|monDom2|scaffold_33 (13234649-13234887)
               

               
               1-227, gnl|rheMac2|chr14 (24739631-24739433)
               

               
               1-227, gnl|rn3|chr3 (75352936-75352735)
               


               
               324-514, gnl|bosTau2|chr15 (48972113-48972303)
               

               
               324-514, gnl|Hg17|chr11 (47338168-47337978)
               

               
               324-514, gnl|Mm7|chr2 (90963970-90964163)
               


               
               673-948, gnl|bosTau2|chr15 (48973586-48973861)
               

               
               673-948, gnl|Hg17|chr11 (47333676-47333401)
               

               
               673-948, gnl|Mm7|chr2 (90965788-90966063)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-227, gnl|bosTau2|chr15 (48926924-48927165)
               

               
               1-227, gnl|canFam2|chr18 (45288389-45288190)
               

               
               1-227, gnl|dasNov1|scaffold_259404 (4037-3839)
               

               
               1-227, gnl|hg17|chr11 (47356426-47356624)
               

               
               1-227, gnl|Hg17|chr11 (47356662-47356436)
               

               
               1-227, gnl|mm7|chr2 (90947721-90947521)
               

               
               1-227, gnl|Mm7|chr2 (90947481-90947709)
               

               
               1-227, gnl|monDom2|scaffold_33 (13234649-13234887)
               

               
               1-227, gnl|rheMac2|chr14 (24739631-24739433)
               

               
               1-227, gnl|rn3|chr3 (75352936-75352735)
               


               
               324-514, gnl|bosTau2|chr15 (48972113-48972303)
               

               
               324-514, gnl|Hg17|chr11 (47338168-47337978)
               

               
               324-514, gnl|Mm7|chr2 (90963970-90964163)
               


               
               673-948, gnl|bosTau2|chr15 (48973586-48973861)
               

               
               673-948, gnl|Hg17|chr11 (47333676-47333401)
               

               
               673-948, gnl|Mm7|chr2 (90965788-90966063)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cty (0.41632)
               

               
               csp (0.161186)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               med (0.116252)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.41632)
               

               
               csp (0.161186)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               med (0.116252)

	1-227, gnl\|bosTau2\|chr15 (48926924-48927165)
	1-227, gnl\|canFam2\|chr18 (45288389-45288190)
	1-227, gnl\|dasNov1\|scaffold_259404 (4037-3839)
	1-227, gnl\|hg17\|chr11 (47356426-47356624)
	1-227, gnl\|Hg17\|chr11 (47356662-47356436)
	1-227, gnl\|mm7\|chr2 (90947721-90947521)
	1-227, gnl\|Mm7\|chr2 (90947481-90947709)
	1-227, gnl\|monDom2\|scaffold_33 (13234649-13234887)
	1-227, gnl\|rheMac2\|chr14 (24739631-24739433)
	1-227, gnl\|rn3\|chr3 (75352936-75352735)

	324-514, gnl\|bosTau2\|chr15 (48972113-48972303)
	324-514, gnl\|Hg17\|chr11 (47338168-47337978)
	324-514, gnl\|Mm7\|chr2 (90963970-90964163)

	673-948, gnl\|bosTau2\|chr15 (48973586-48973861)
	673-948, gnl\|Hg17\|chr11 (47333676-47333401)
	673-948, gnl\|Mm7\|chr2 (90965788-90966063)

	cty (0.41632)
	csp (0.161186)
	ese (0.126502)
	clu (0.119646)
	med (0.116252)