Non-Coding RNA Search

Ss1.1-Spl1-SPL010010F05.5

Sequence:


               
               GCTGTATTAATAAATTCAGTGTGTAGCTTCAATTGGGGTAGTTGCAAAAGTGAAGGTTTC
GTGAGGAATAAGTTTTTTTTTTTTTTTTTTTTTTTTTTAATTCTTGGAAATTCTTGATTC
TTTGTGTCTGCAATGAAATTGTACTCCTTGACAGTTGGTAGATCATATATTCCTCCATCG
CTCAGACTCGCATTCCACTCTATTTATTTTTTTGCCAAAAGACAAGGTATCTTTGAAATT
CGAGACACTACGTCCCATTCGATGCAGTTGTTCCCAGGTCTTCCACCTGATGTGGAAAGC
CTTCCTTGGACGTCACAGCACTACAGTTCAGCCTGCTAAGGATGGCTTGCAAGTCTCCAG
GTTTTCATTACCAACCCCTTAGGCTTCTGAATGTAGGTGGAGTCTCACGTAGGGGTCACC
AAAGGTGTCTGCTGTCCTCCGCTGCCTAGAAGCATCGGTTTGAGACTGTCCCAAGGGTGT
CGGGGATTCGGTGGCAGGGGCCCTGGGCTGCTTGCCGTCTGAGCGTGGGCTGCGAGAGAC
ATTCCTGATTTTGCATCTTGGACTCCTCTAAGGAATGGAACACAAGTAGTTACCTGTCAC
TTTAACATTTCCCATTCCAGAAGATTCCTACAACCATGTCCATGCTCAGATTCGAATGTT
GTTGACTAGCCACACTGTGGATAGCAAAATGATTGACCTTTTAAAAAACTGGCAGCCGCA
CTTGCCATTCTTTTTACTCTGACTTTTGTTTTTATTTTTTGTTTTGTTTTTACTGAGCTC
TTGCATGATTTATCTTGTGTTACCATCCTAAATAAATGTTTTATTAAACATAGAATAAAC
TGTCTTTTTTTTATGAATCAGGCTTTTGGAACAGCCTGTGTTAGGATGGCTGTTTTGGAT
TTTCAGTTGGCAACAAAAGCTCTCCCTGGGGCTGCAAACGTTTGCTCTCCACTTAATAAT
CTAAAACTTTTTGTAACTTTTGTAAGAATTGGAATTTCCCTCCTTATTTTGCTGTCATAT
CAATTTGCTGCATTTTTTTTTTTATTTCTGTGAAAACCGTAGACTTTGTTTTTATGTGAT
GCCCCGTAAATGTTAAAGTGTTGAATACTAACAGTGTTTATTCCAAGAAGAAAGATGTAG
TAGTTTTGCTTGCCACATTAAAGTATCTTGTGGAGGAAGGGAGCTGGATGGGGTTTATTT
TGATCAGTGTGTCTCTTAATAGCTTTCTAAATAGGTGGTGTCACTGCACAGCTTAACCTG
CTGTCTTCCTCGCTCTCATCTTGCTCTCCCTCCCCGCCCGGCCTCACACCTTTGCTTTTG
GGTATCAGGGTGTCTTTCCAGCATCCCAGCCTTGGTTTAGTCTGTGTTTTTATCCTCTTT
GGAAGATGTCGATAGCGTGAAGGAAGGGTGAGAAATCCTGTCCTAAGGGGAGCAGACTCC
TTGCTGCCCAAACTGGAGGTGGGTAGGGGGCTCACACCTGCTCTTGTGCCTGTACATAAC
ACGCAAGCTGGCATCGGCCCTTGGAGAGGACAGTGCACAGAGCACGCCACCTGATGTACG
AAGCGCCAGTGCCTCCGTCAGTCATTCTGCCCAAGTGAAAATAAAGTGGACTCGGCCGTT
GCCACCACCAGGGTGACCTCCTCAGAGGTGCCCGAGGGGAGCGCGGGACTGGGGCAGCGG
CGGCGGCAGCCTCCCCGCACACGCTGGAAGCAGAGGCACTGTGTGATGCGCCTCACGAAG
CACTGTTTCAGAATTGCTCTCACTTCCTGAATAAAGGTTATCAGGTAATTCAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGTATTAATAAATTCAGTGTGTAGCTTCAATTGGGGTAGTTGCAAAAGTGAAGGTTTC
GTGAGGAATAAGTTTTTTTTTTTTTTTTTTTTTTTTTTAATTCTTGGAAATTCTTGATTC
TTTGTGTCTGCAATGAAATTGTACTCCTTGACAGTTGGTAGATCATATATTCCTCCATCG
CTCAGACTCGCATTCCACTCTATTTATTTTTTTGCCAAAAGACAAGGTATCTTTGAAATT
CGAGACACTACGTCCCATTCGATGCAGTTGTTCCCAGGTCTTCCACCTGATGTGGAAAGC
CTTCCTTGGACGTCACAGCACTACAGTTCAGCCTGCTAAGGATGGCTTGCAAGTCTCCAG
GTTTTCATTACCAACCCCTTAGGCTTCTGAATGTAGGTGGAGTCTCACGTAGGGGTCACC
AAAGGTGTCTGCTGTCCTCCGCTGCCTAGAAGCATCGGTTTGAGACTGTCCCAAGGGTGT
CGGGGATTCGGTGGCAGGGGCCCTGGGCTGCTTGCCGTCTGAGCGTGGGCTGCGAGAGAC
ATTCCTGATTTTGCATCTTGGACTCCTCTAAGGAATGGAACACAAGTAGTTACCTGTCAC
TTTAACATTTCCCATTCCAGAAGATTCCTACAACCATGTCCATGCTCAGATTCGAATGTT
GTTGACTAGCCACACTGTGGATAGCAAAATGATTGACCTTTTAAAAAACTGGCAGCCGCA
CTTGCCATTCTTTTTACTCTGACTTTTGTTTTTATTTTTTGTTTTGTTTTTACTGAGCTC
TTGCATGATTTATCTTGTGTTACCATCCTAAATAAATGTTTTATTAAACATAGAATAAAC
TGTCTTTTTTTTATGAATCAGGCTTTTGGAACAGCCTGTGTTAGGATGGCTGTTTTGGAT
TTTCAGTTGGCAACAAAAGCTCTCCCTGGGGCTGCAAACGTTTGCTCTCCACTTAATAAT
CTAAAACTTTTTGTAACTTTTGTAAGAATTGGAATTTCCCTCCTTATTTTGCTGTCATAT
CAATTTGCTGCATTTTTTTTTTTATTTCTGTGAAAACCGTAGACTTTGTTTTTATGTGAT
GCCCCGTAAATGTTAAAGTGTTGAATACTAACAGTGTTTATTCCAAGAAGAAAGATGTAG
TAGTTTTGCTTGCCACATTAAAGTATCTTGTGGAGGAAGGGAGCTGGATGGGGTTTATTT
TGATCAGTGTGTCTCTTAATAGCTTTCTAAATAGGTGGTGTCACTGCACAGCTTAACCTG
CTGTCTTCCTCGCTCTCATCTTGCTCTCCCTCCCCGCCCGGCCTCACACCTTTGCTTTTG
GGTATCAGGGTGTCTTTCCAGCATCCCAGCCTTGGTTTAGTCTGTGTTTTTATCCTCTTT
GGAAGATGTCGATAGCGTGAAGGAAGGGTGAGAAATCCTGTCCTAAGGGGAGCAGACTCC
TTGCTGCCCAAACTGGAGGTGGGTAGGGGGCTCACACCTGCTCTTGTGCCTGTACATAAC
ACGCAAGCTGGCATCGGCCCTTGGAGAGGACAGTGCACAGAGCACGCCACCTGATGTACG
AAGCGCCAGTGCCTCCGTCAGTCATTCTGCCCAAGTGAAAATAAAGTGGACTCGGCCGTT
GCCACCACCAGGGTGACCTCCTCAGAGGTGCCCGAGGGGAGCGCGGGACTGGGGCAGCGG
CGGCGGCAGCCTCCCCGCACACGCTGGAAGCAGAGGCACTGTGTGATGCGCCTCACGAAG
CACTGTTTCAGAATTGCTCTCACTTCCTGAATAAAGGTTATCAGGTAATTCAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               81-200, - strand, RNAz p=0.643464
               

               
               791-891, + strand, RNAz p=0.945664

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-200, - strand, RNAz p=0.643464
               

               
               791-891, + strand, RNAz p=0.945664

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-1792, gnl|bosTau2|chr25 (33389678-33387929)
               

               
               1-1792, gnl|Hg17|chr7 (6275772-6273960)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1792, gnl|bosTau2|chr25 (33389678-33387929)
               

               
               1-1792, gnl|Hg17|chr7 (6275772-6273960)

Expressed library(ies): 41 entry(ies)

More info

Expressed library(ies): 41 entry(ies)

Help | Less info


               
               cov (0.660764)
               

               
               pro (0.512033)
               

               
               pgl (0.473934)
               

               
               csk (0.422238)
               

               
               cst (0.420109)
               

               
               eep (0.367692)
               

               
               eru (0.360144)
               

               
               ecc (0.345105)
               

               
               fat (0.294855)
               

               
               spl (0.286369)
               

               
               pty (0.285429)
               

               
               cga (0.279096)
               

               
               ova (0.258264)
               

               
               ese (0.253004)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 41 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.660764)
               

               
               pro (0.512033)
               

               
               pgl (0.473934)
               

               
               csk (0.422238)
               

               
               cst (0.420109)
               

               
               eep (0.367692)
               

               
               eru (0.360144)
               

               
               ecc (0.345105)
               

               
               fat (0.294855)
               

               
               spl (0.286369)
               

               
               pty (0.285429)
               

               
               cga (0.279096)
               

               
               ova (0.258264)
               

               
               ese (0.253004)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	81-200, - strand, RNAz p=0.643464
	791-891, + strand, RNAz p=0.945664

	1-1792, gnl\|bosTau2\|chr25 (33389678-33387929)
	1-1792, gnl\|Hg17\|chr7 (6275772-6273960)

	cov (0.660764)
	pro (0.512033)
	pgl (0.473934)
	csk (0.422238)
	cst (0.420109)
	eep (0.367692)
	eru (0.360144)
	ecc (0.345105)
	fat (0.294855)
	spl (0.286369)
	pty (0.285429)
	cga (0.279096)
	ova (0.258264)
	ese (0.253004)
	nms (0.213858)
	tes (0.207814)
	col (0.195008)
	nlu (0.191681)
	cmu (0.186393)
	ill (0.175593)
	ton (0.1755)
	eye (0.170503)
	cut (0.169924)
	tbr (0.154178)
	lun (0.150489)
	lin (0.145603)
	nca (0.136874)
	che (0.136314)
	pla (0.133672)
	sug (0.127291)
	thg (0.126791)
	bla (0.124347)
	ebs (0.118301)
	med (0.116252)
	jca (0.11396)
	spc (0.113366)
	cty (0.10408)
	nbm (0.0993246)
	jej (0.0989218)
	eje (0.0988338)
	ldo (0.0970026)