Ss1.1-Spl1-SPL010011A01.5
|
CGCCCGGCCGCCCGCCCGCAGTCCAGGTCGCCGCCATGTCTTCCGGGGCCAGCGTGAGCG
CCCTGCAGCGCCTGGTGGAGCAGCTCAAGCTGGAGGCCAGCGTGGAGAGGATCAAGGTCT
CTCAGGCAGCTGCAGAGCTTCAGCAATACTGCATGCAAAATGCCTGCAAGGATGCCCTGC
TGGTAGGTATTCCAACTGGAAGCAACCCCTTCCGGGAGCCCAGATCCTGTGCTTTACTCT
GATGACAGTAGGGAAGAAGTTCACTGAGGAATGCTTTCAAGCACAAAGTGGTGAATGACT
GCCTTCAAATCTCAAGAAAACACTGCTCTAGCCAAATGACTTTTAGATATTGCAAACCTT
TCTCTTAGCCAGAATTCTACAGAAATGGATGAGTTTCTACTCAAACAAGGAAACTGAGTG
AAGGAGTAGATCTTAAATAATAATGGCCTCATTCTTTTGGTGAAGTGCATTATATTTAAG
ACAAACAAAAACCTAACCACCAAATAAACCAAAATACACCTCTTTCATTAAGTGAATTAC
TAGTGTTTCTATACCTGGCGTGTTATGTATGTTTTATATACTGGATGTTTACATTTGGGG
AAGGAAAACAGTTTTGTTTGTTAAAAAATTGCCTATTTGTAATTTGTTATTCCTAAGATT
TTTATACCAAAACAAAATTTGTTCTTTTCTCATGAATTTACAATTTCTCAAGCAACTGTA
AAACTGGGGGAAGAATAGGCTTTGTTAATCAGATGATGTCTTGGTTTTTCTAAATGAGAA
GATGATTTTATTTTTAACACTAAGCATGGGAACTTCTTCTTAGCACCCTGACGGGAAAGA
CGAGTGTTGTGTTTTGCATGAGATTGCCCCATCCTGTAATGAAACAGATTGGATATTTGT
CTTCTTAAGTTCCTCTGCTTTATAGAGGTGATTGTACTTAAAAAAAAAAAAAAATACTAC
ATTATTTCATGTTTTTAAAACAGTGTTAAATGTGGTTTACAGAACATTGCAAATGATTAA
AAACAAAGTAACGTGAAAATCTTACCACCTAAAAGAATTCTTAATGTCACAAGTATTTGA
TGTGTTTTTGATTTAATTTGGGACATTTTTAAAAGGATACTTTATTTGTGTTTGTAATAA
TCTTTGAAGAGCTTTGAAATAAAATTTCTCCTTAATTCATTGTTTTCT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGCCCGGCCGCCCGCCCGCAGTCCAGGTCGCCGCCATGTCTTCCGGGGCCAGCGTGAGCG
CCCTGCAGCGCCTGGTGGAGCAGCTCAAGCTGGAGGCCAGCGTGGAGAGGATCAAGGTCT
CTCAGGCAGCTGCAGAGCTTCAGCAATACTGCATGCAAAATGCCTGCAAGGATGCCCTGC
TGGTAGGTATTCCAACTGGAAGCAACCCCTTCCGGGAGCCCAGATCCTGTGCTTTACTCT
GATGACAGTAGGGAAGAAGTTCACTGAGGAATGCTTTCAAGCACAAAGTGGTGAATGACT
GCCTTCAAATCTCAAGAAAACACTGCTCTAGCCAAATGACTTTTAGATATTGCAAACCTT
TCTCTTAGCCAGAATTCTACAGAAATGGATGAGTTTCTACTCAAACAAGGAAACTGAGTG
AAGGAGTAGATCTTAAATAATAATGGCCTCATTCTTTTGGTGAAGTGCATTATATTTAAG
ACAAACAAAAACCTAACCACCAAATAAACCAAAATACACCTCTTTCATTAAGTGAATTAC
TAGTGTTTCTATACCTGGCGTGTTATGTATGTTTTATATACTGGATGTTTACATTTGGGG
AAGGAAAACAGTTTTGTTTGTTAAAAAATTGCCTATTTGTAATTTGTTATTCCTAAGATT
TTTATACCAAAACAAAATTTGTTCTTTTCTCATGAATTTACAATTTCTCAAGCAACTGTA
AAACTGGGGGAAGAATAGGCTTTGTTAATCAGATGATGTCTTGGTTTTTCTAAATGAGAA
GATGATTTTATTTTTAACACTAAGCATGGGAACTTCTTCTTAGCACCCTGACGGGAAAGA
CGAGTGTTGTGTTTTGCATGAGATTGCCCCATCCTGTAATGAAACAGATTGGATATTTGT
CTTCTTAAGTTCCTCTGCTTTATAGAGGTGATTGTACTTAAAAAAAAAAAAAAATACTAC
ATTATTTCATGTTTTTAAAACAGTGTTAAATGTGGTTTACAGAACATTGCAAATGATTAA
AAACAAAGTAACGTGAAAATCTTACCACCTAAAAGAATTCTTAATGTCACAAGTATTTGA
TGTGTTTTTGATTTAATTTGGGACATTTTTAAAAGGATACTTTATTTGTGTTTGTAATAA
TCTTTGAAGAGCTTTGAAATAAAATTTCTCCTTAATTCATTGTTTTCT
|
|
1-118, gnl|bosTau2|chr8 (55774113-55774230) |
|
1-118, gnl|canFam2|chr9 (50610589-50610487) |
|
1-118, gnl|danRer3|chr13 (653797-653724) |
|
1-118, gnl|dasNov1|scaffold_110619 (5407-5501) |
|
1-118, gnl|echTel1|scaffold_286422 (5921-6017) |
|
1-118, gnl|fr1|chrUn (83959915-83959801) |
|
1-118, gnl|hg17|chr10 (127638887-127638989) |
|
1-118, gnl|Hg17|chr9 (111503429-111503552) |
|
1-118, gnl|loxAfr1|scaffold_11740 (37929-38045) |
|
1-118, gnl|mm7|chr4 (59076706-59076622) |
|
1-118, gnl|Mm7|chr4 (59076601-59076709) |
|
1-118, gnl|monDom2|scaffold_19 (35871916-35872017) |
|
1-118, gnl|oryCun1|scaffold_176919 (23429-23532) |
|
1-118, gnl|panTro1|chr8 (130153425-130153527) |
|
1-118, gnl|rheMac2|chr9 (125540029-125540132) |
|
1-118, gnl|rn3|chr11 (65612139-65612052) |
|
1-118, gnl|tetNig1|chr4 (3743346-3743466) |
| |
|
245-1177, gnl|bosTau2|chr8 (55779207-55780148) |
|
245-1177, gnl|Hg17|chr9 (111511100-111512059) |
|
245-1177, gnl|Mm7|chr4 (59082458-59083272) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-118, gnl|bosTau2|chr8 (55774113-55774230) |
|
1-118, gnl|canFam2|chr9 (50610589-50610487) |
|
1-118, gnl|danRer3|chr13 (653797-653724) |
|
1-118, gnl|dasNov1|scaffold_110619 (5407-5501) |
|
1-118, gnl|echTel1|scaffold_286422 (5921-6017) |
|
1-118, gnl|fr1|chrUn (83959915-83959801) |
|
1-118, gnl|hg17|chr10 (127638887-127638989) |
|
1-118, gnl|Hg17|chr9 (111503429-111503552) |
|
1-118, gnl|loxAfr1|scaffold_11740 (37929-38045) |
|
1-118, gnl|mm7|chr4 (59076706-59076622) |
|
1-118, gnl|Mm7|chr4 (59076601-59076709) |
|
1-118, gnl|monDom2|scaffold_19 (35871916-35872017) |
|
1-118, gnl|oryCun1|scaffold_176919 (23429-23532) |
|
1-118, gnl|panTro1|chr8 (130153425-130153527) |
|
1-118, gnl|rheMac2|chr9 (125540029-125540132) |
|
1-118, gnl|rn3|chr11 (65612139-65612052) |
|
1-118, gnl|tetNig1|chr4 (3743346-3743466) |
| |
|
245-1177, gnl|bosTau2|chr8 (55779207-55780148) |
|
245-1177, gnl|Hg17|chr9 (111511100-111512059) |
|
245-1177, gnl|Mm7|chr4 (59082458-59083272) |
|
cbl (1.60716) |
|
bfe (1.34872) |
|
vin (1.33023) |
|
liv (1.31656) |
|
tes (1.24688) |
|
lyg (1.06482) |
|
spl (1.00229) |
|
mgp (0.922722) |
|
sme (0.91631) |
|
ova (0.903926) |
|
ret (0.7724) |
|
ski (0.733676) |
|
lin (0.728014) |
|
kid (0.648677) |
|
sug (0.636456) |
|
isp (0.601504) |
|
ldo (0.582016) |
|
tbr (0.462535) |
|
amn (0.417711) |
|
ssp (0.406559) |
|
ste (0.405625) |
|
bla (0.373042) |
|
tra (0.369276) |
|
mgm (0.360685) |
|
sin (0.349895) |
|
rec (0.346141) |
|
jca (0.34188) |
|
fat (0.294855) |
|
cte (0.29274) |
|
che (0.272628) |
|
thg (0.253582) |
|
eru (0.240096) |
|
cbe (0.239234) |
|
spc (0.226732) |
|
nms (0.213858) |
|
mas (0.210305) |
|
fcc (0.197785) |
|
nlu (0.191681) |
|
sag (0.182715) |
|
gul (0.177588) |
|
fbs (0.175346) |
|
eye (0.170503) |
|
nje (0.16592) |
|
cje (0.165235) |
|
nco (0.161734) |
|
csp (0.161186) |
|
mga (0.160205) |
|
fco (0.157208) |
|
lun (0.150489) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
cst (0.140036) |
|
nca (0.136874) |
|
pla (0.133672) |
|
ute (0.132784) |
|
ese (0.126502) |
|
ebs (0.118301) |
|
nbm (0.0993246) |
|
cbl (1.60716) |
|
bfe (1.34872) |
|
vin (1.33023) |
|
liv (1.31656) |
|
tes (1.24688) |
|
lyg (1.06482) |
|
spl (1.00229) |
|
mgp (0.922722) |
|
sme (0.91631) |
|
ova (0.903926) |
|
ret (0.7724) |
|
ski (0.733676) |
|
lin (0.728014) |
|
kid (0.648677) |
|
sug (0.636456) |
|
isp (0.601504) |
|
ldo (0.582016) |
|
tbr (0.462535) |
|
amn (0.417711) |
|
ssp (0.406559) |
|
ste (0.405625) |
|
bla (0.373042) |
|
tra (0.369276) |
|
mgm (0.360685) |
|
sin (0.349895) |
|
rec (0.346141) |
|
jca (0.34188) |
|
fat (0.294855) |
|
cte (0.29274) |
|
che (0.272628) |
|
thg (0.253582) |
|
eru (0.240096) |
|
cbe (0.239234) |
|
spc (0.226732) |
|
nms (0.213858) |
|
mas (0.210305) |
|
fcc (0.197785) |
|
nlu (0.191681) |
|
sag (0.182715) |
|
gul (0.177588) |
|
fbs (0.175346) |
|
eye (0.170503) |
|
nje (0.16592) |
|
cje (0.165235) |
|
nco (0.161734) |
|
csp (0.161186) |
|
mga (0.160205) |
|
fco (0.157208) |
|
lun (0.150489) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
cst (0.140036) |
|
nca (0.136874) |
|
pla (0.133672) |
|
ute (0.132784) |
|
ese (0.126502) |
|
ebs (0.118301) |
|
nbm (0.0993246) |
