Non-Coding RNA Search

Ss1.1-Spl1-SPL010011B05.5

Sequence:


               
               ACGAGCGCCGCCTCGGTGTACCAACCCGCCCAGCTGCTCAACTGGGTCTACCTGTCGCTG
CAGGACACACACCAGGCGAGCGCCTTCGATGCCTTCCGGCCCGAGCCGCCCGCCGGCGCC
GCGCCCCCAGAGCTGGCCTTCGGCAAGGGCCGCCCAGAGCAGCTGGGCTCGCCCTTGCAC
TCCAGCTATCTCAACAGCTTCTTCCAGCGGCAGCGCGGAGAGGCGCTGAGCAGCAGCGTG
TACAAGAGTGCCTCTCCCTATGGCTCCCTCAACAACATCGCCGACGGCCTCAGCTCCCTC
ACAGAGCACTTCTCTGACCTGACCCTCACCTCTGAGACCCGCAAGCCCAGCAAGCGGCCC
CCACCCAACTACCTGTGCCACCTGTGCTTCAACAAAGGACACTACATTAAGGACTGCCCC
CAGGCACGCCCCAAAGGCGAGGGTCTGACCCCGTATCAGGGCAAAAAGCGCTGTTTCGGA
GAGTACAAGTGTCCCAAGTGCAAGAGAAAATGGATGAGCGGGAACTCTTGGGCCAACATG
GGACAGGAGTGCATCAAGTGCCACATCAACGTGTACCCACACAAGCAGAGACCCCTGGAG
AAGCCCGATGGCCTGGACGTGTCTGACCAGAGCAAGGAGCACCCCCAGCACCTGTGCGAG
AAGTGCAAGGTGCTGGGCTACTACTGCCGGCGCGTGCAATGACCCGGCCGCCCACCATGC
CCCACCGCCCTCCTGCCAGCTGGAGAAGACGCAACCACCCTGCATGTCCCCAAGTGTGCA
CGTGCAAGGGGGCATCCTCAAAGGCTTACAGGTCTGGTGGGTGGGCTCTTATGTTCTTGT
ATGTTGACAAACAGTGTTAACTGACGTAGCTGCCGCCCCACAAGGCCCGCTCTCTGCGAC
TCTCTACAGGTGGGCCTGGGTCTGTGTGGAGGGGACAAGGTGAGCAGAGGTCAGCGCACA
GGACCCCACAGAGCCTTCAGCGTCCCCTGCAGGCTCTCCTCTGAGACTCCCTTTTGGGTG
AGCAGCCTTACATTGGCCACAAGTGCACTAAATTTACTGTGAATCCCAGAGCCTGCAGGG
GATGGTCTCCCAAAACCAGCCAGGTGGCCTTCTCCCACCCAGAACCTTCCAGTTTGCCCT
GTGTGAAAAGCCACTCTTGGAAAGCCCTAATTTTCTAAGTCAGTGCTCATGGCAAGCTGA
CTCCTGTTCTAGCAGCTGCTGGGGAGCGGGCATCTCTGCCCCCTGCCACTTTGAGCCCCA
AACCTGACTGCCTCTGAAGCCACTGGCATTGCACCTGGGCCCCGCACATCTCCCCTCCCC
CTACACCCCAGAGGTCAGGGATGGGGAGGCACTGAATGTTGGACGGTGCTCCAGCGTGTG
ACCTGGGGCACAGAGGGCAACACCCCCTCCCCCACCACAGACTTCCCCCACGCGTTTGGA
TTTTGCCAGCCCTATCCCCTTCCCTTCTCCTTCCCCTCTCACCCATGCTGGGGAGCCACA
CCCGGAAGGAGGCAATAGGACCCAGCAGGGAAACCACTCTGGCAGGAAGGACCCAGGCCT
GGCAGTCCAAAGACCTGGGTTTTAATGCTGACCCCGCCACTGATGCACTACAGAGCCTTG
AGAAGGATTCTCACCTCTGGGCCTCTGTTTCCCCACTAAGAGAAAGAGAGAGTGACACCA
GAGAGGCCCATTTCTGTCCTGATGTTCTGGAATTCTGCCTGGCTGGGTGCCATCTCCTGG
AGCAGAGAGCTTTATTTGGAGAGTTTCCCCAGGCTCCCTACCCATCCCCTTCCCACTATC
ACCCATCAGTCAGTCACTTAAGAAATCAGGTGGAGGGATGCAGGTCCTCCCCTGTTGCCC
CCTGCAACCCCAGCCATGTCTTTTGTCCCCTACCCTGCAAACGTGAAGGAGAAAGGTCTC
CCCCTCCTTACAGGGCAACCCCAAGACACGCTACAGAACCTCTGGTTTGCAAAGTGGGGA
CAATGATTCCTACCTCCTGAGGGGGCGGAGAGGCCTCCTGGCACTCACACTGGACAGGCC
TGCCGATGCTGTCCTGGCTAGTGGGAAGGATTGCCTTCCTCTCTGCTCTCTCCCCCATGA
GAAGCCCTATTTGCTTTGTCATATTACCCTTCCTTTCTCCCAGGGCTGGGTCCTTTGATG
TTGCCCCAACATTATGCCTCTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGAGCGCCGCCTCGGTGTACCAACCCGCCCAGCTGCTCAACTGGGTCTACCTGTCGCTG
CAGGACACACACCAGGCGAGCGCCTTCGATGCCTTCCGGCCCGAGCCGCCCGCCGGCGCC
GCGCCCCCAGAGCTGGCCTTCGGCAAGGGCCGCCCAGAGCAGCTGGGCTCGCCCTTGCAC
TCCAGCTATCTCAACAGCTTCTTCCAGCGGCAGCGCGGAGAGGCGCTGAGCAGCAGCGTG
TACAAGAGTGCCTCTCCCTATGGCTCCCTCAACAACATCGCCGACGGCCTCAGCTCCCTC
ACAGAGCACTTCTCTGACCTGACCCTCACCTCTGAGACCCGCAAGCCCAGCAAGCGGCCC
CCACCCAACTACCTGTGCCACCTGTGCTTCAACAAAGGACACTACATTAAGGACTGCCCC
CAGGCACGCCCCAAAGGCGAGGGTCTGACCCCGTATCAGGGCAAAAAGCGCTGTTTCGGA
GAGTACAAGTGTCCCAAGTGCAAGAGAAAATGGATGAGCGGGAACTCTTGGGCCAACATG
GGACAGGAGTGCATCAAGTGCCACATCAACGTGTACCCACACAAGCAGAGACCCCTGGAG
AAGCCCGATGGCCTGGACGTGTCTGACCAGAGCAAGGAGCACCCCCAGCACCTGTGCGAG
AAGTGCAAGGTGCTGGGCTACTACTGCCGGCGCGTGCAATGACCCGGCCGCCCACCATGC
CCCACCGCCCTCCTGCCAGCTGGAGAAGACGCAACCACCCTGCATGTCCCCAAGTGTGCA
CGTGCAAGGGGGCATCCTCAAAGGCTTACAGGTCTGGTGGGTGGGCTCTTATGTTCTTGT
ATGTTGACAAACAGTGTTAACTGACGTAGCTGCCGCCCCACAAGGCCCGCTCTCTGCGAC
TCTCTACAGGTGGGCCTGGGTCTGTGTGGAGGGGACAAGGTGAGCAGAGGTCAGCGCACA
GGACCCCACAGAGCCTTCAGCGTCCCCTGCAGGCTCTCCTCTGAGACTCCCTTTTGGGTG
AGCAGCCTTACATTGGCCACAAGTGCACTAAATTTACTGTGAATCCCAGAGCCTGCAGGG
GATGGTCTCCCAAAACCAGCCAGGTGGCCTTCTCCCACCCAGAACCTTCCAGTTTGCCCT
GTGTGAAAAGCCACTCTTGGAAAGCCCTAATTTTCTAAGTCAGTGCTCATGGCAAGCTGA
CTCCTGTTCTAGCAGCTGCTGGGGAGCGGGCATCTCTGCCCCCTGCCACTTTGAGCCCCA
AACCTGACTGCCTCTGAAGCCACTGGCATTGCACCTGGGCCCCGCACATCTCCCCTCCCC
CTACACCCCAGAGGTCAGGGATGGGGAGGCACTGAATGTTGGACGGTGCTCCAGCGTGTG
ACCTGGGGCACAGAGGGCAACACCCCCTCCCCCACCACAGACTTCCCCCACGCGTTTGGA
TTTTGCCAGCCCTATCCCCTTCCCTTCTCCTTCCCCTCTCACCCATGCTGGGGAGCCACA
CCCGGAAGGAGGCAATAGGACCCAGCAGGGAAACCACTCTGGCAGGAAGGACCCAGGCCT
GGCAGTCCAAAGACCTGGGTTTTAATGCTGACCCCGCCACTGATGCACTACAGAGCCTTG
AGAAGGATTCTCACCTCTGGGCCTCTGTTTCCCCACTAAGAGAAAGAGAGAGTGACACCA
GAGAGGCCCATTTCTGTCCTGATGTTCTGGAATTCTGCCTGGCTGGGTGCCATCTCCTGG
AGCAGAGAGCTTTATTTGGAGAGTTTCCCCAGGCTCCCTACCCATCCCCTTCCCACTATC
ACCCATCAGTCAGTCACTTAAGAAATCAGGTGGAGGGATGCAGGTCCTCCCCTGTTGCCC
CCTGCAACCCCAGCCATGTCTTTTGTCCCCTACCCTGCAAACGTGAAGGAGAAAGGTCTC
CCCCTCCTTACAGGGCAACCCCAAGACACGCTACAGAACCTCTGGTTTGCAAAGTGGGGA
CAATGATTCCTACCTCCTGAGGGGGCGGAGAGGCCTCCTGGCACTCACACTGGACAGGCC
TGCCGATGCTGTCCTGGCTAGTGGGAAGGATTGCCTTCCTCTCTGCTCTCTCCCCCATGA
GAAGCCCTATTTGCTTTGTCATATTACCCTTCCTTTCTCCCAGGGCTGGGTCCTTTGATG
TTGCCCCAACATTATGCCTCTGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8N2G6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8N2G6_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1863-1953, - strand, RNAz p=0.895264
               

               
               2045-2146, - strand, RNAz p=0.851045

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1863-1953, - strand, RNAz p=0.895264
               

               
               2045-2146, - strand, RNAz p=0.851045

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_153367, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_153367, -

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               221-424, gnl|bosTau2|chr28 (27683323-27683120)
               

               
               221-424, gnl|Hg17|chr10 (80862522-80862319)
               

               
               221-424, gnl|Mm7|chr14 (23427937-23427734)
               


               
               585-1824, gnl|bosTau2|chr28 (27922132-27920901)
               

               
               585-1824, gnl|Hg17|chr10 (80816224-80814933)
               

               
               585-1824, gnl|Mm7|chr14 (23386592-23385418)
               


               
               1863-2146, gnl|bosTau2|chr28 (27920899-27920624)
               

               
               1863-2146, gnl|canFam2|chr4 (32313108-32313616)
               

               
               1863-2146, gnl|dasNov1|scaffold_81239 (2457-2980)
               

               
               1863-2146, gnl|hg17|chr10 (80814481-80814994)
               

               
               1863-2146, gnl|Hg17|chr10 (80814931-80814642)
               

               
               1863-2146, gnl|loxAfr1|scaffold_23192 (20550-19997)
               

               
               1863-2146, gnl|mm7|chr14 (23384983-23385444)
               

               
               1863-2146, gnl|Mm7|chr14 (23385416-23385126)
               

               
               1863-2146, gnl|monDom2|scaffold_14 (9008627-9009142)
               

               
               1863-2146, gnl|oryCun1|scaffold_213544 (34603-35049)
               

               
               1863-2146, gnl|panTro1|chr8 (82206316-82206827)
               

               
               1863-2146, gnl|rheMac2|chr9 (57685403-57684888)
               

               
               1863-2146, gnl|rn3|chr16 (1312375-1312858)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               221-424, gnl|bosTau2|chr28 (27683323-27683120)
               

               
               221-424, gnl|Hg17|chr10 (80862522-80862319)
               

               
               221-424, gnl|Mm7|chr14 (23427937-23427734)
               


               
               585-1824, gnl|bosTau2|chr28 (27922132-27920901)
               

               
               585-1824, gnl|Hg17|chr10 (80816224-80814933)
               

               
               585-1824, gnl|Mm7|chr14 (23386592-23385418)
               


               
               1863-2146, gnl|bosTau2|chr28 (27920899-27920624)
               

               
               1863-2146, gnl|canFam2|chr4 (32313108-32313616)
               

               
               1863-2146, gnl|dasNov1|scaffold_81239 (2457-2980)
               

               
               1863-2146, gnl|hg17|chr10 (80814481-80814994)
               

               
               1863-2146, gnl|Hg17|chr10 (80814931-80814642)
               

               
               1863-2146, gnl|loxAfr1|scaffold_23192 (20550-19997)
               

               
               1863-2146, gnl|mm7|chr14 (23384983-23385444)
               

               
               1863-2146, gnl|Mm7|chr14 (23385416-23385126)
               

               
               1863-2146, gnl|monDom2|scaffold_14 (9008627-9009142)
               

               
               1863-2146, gnl|oryCun1|scaffold_213544 (34603-35049)
               

               
               1863-2146, gnl|panTro1|chr8 (82206316-82206827)
               

               
               1863-2146, gnl|rheMac2|chr9 (57685403-57684888)
               

               
               1863-2146, gnl|rn3|chr16 (1312375-1312858)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               nms (0.427716)
               

               
               mas (0.210305)
               

               
               cst (0.140036)
               

               
               cov (0.132153)
               

               
               eep (0.122564)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.427716)
               

               
               mas (0.210305)
               

               
               cst (0.140036)
               

               
               cov (0.132153)
               

               
               eep (0.122564)

	1863-1953, - strand, RNAz p=0.895264
	2045-2146, - strand, RNAz p=0.851045

	221-424, gnl\|bosTau2\|chr28 (27683323-27683120)
	221-424, gnl\|Hg17\|chr10 (80862522-80862319)
	221-424, gnl\|Mm7\|chr14 (23427937-23427734)

	585-1824, gnl\|bosTau2\|chr28 (27922132-27920901)
	585-1824, gnl\|Hg17\|chr10 (80816224-80814933)
	585-1824, gnl\|Mm7\|chr14 (23386592-23385418)

	1863-2146, gnl\|bosTau2\|chr28 (27920899-27920624)
	1863-2146, gnl\|canFam2\|chr4 (32313108-32313616)
	1863-2146, gnl\|dasNov1\|scaffold_81239 (2457-2980)
	1863-2146, gnl\|hg17\|chr10 (80814481-80814994)
	1863-2146, gnl\|Hg17\|chr10 (80814931-80814642)
	1863-2146, gnl\|loxAfr1\|scaffold_23192 (20550-19997)
	1863-2146, gnl\|mm7\|chr14 (23384983-23385444)
	1863-2146, gnl\|Mm7\|chr14 (23385416-23385126)
	1863-2146, gnl\|monDom2\|scaffold_14 (9008627-9009142)
	1863-2146, gnl\|oryCun1\|scaffold_213544 (34603-35049)
	1863-2146, gnl\|panTro1\|chr8 (82206316-82206827)
	1863-2146, gnl\|rheMac2\|chr9 (57685403-57684888)
	1863-2146, gnl\|rn3\|chr16 (1312375-1312858)

	nms (0.427716)
	mas (0.210305)
	cst (0.140036)
	cov (0.132153)
	eep (0.122564)