Ss1.1-Spl1-SPL010011B06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTCCATCCGGCGGCCCCTGGGCGGCCCCCACGTCGTCTGCCCGCTGTCGGGTCAGCGCA CCGGGCCTGGTTCCGCTGCTTCCCCGGACCCATTAGTCTGAATCCGGGTGTGGTTTCCAC TACTAGAGAATGAAACATGACTGACGACTCCCAGAGAAACTTCCGTTCAGTATATTATGA AAAAGTGGGGTTTCGTGGAGTTGAAGAAAAGAAATCATTAGAAATTCTCCTCAAAGATGA CCGTCTGGACATCGAGAAACTCTGTACTTTCAGTCAGAGGTTCCCGCTCCCGTCCCTGTA CCGGGCGTTGGTCTGGAAGGTGCTCCTAGGAATCCTGCCTCCGCACCACGAGTCCCACGC CCGGGTGATGGCCTACCGCAAGGAGCAGTACTCGGACGTCCTCCACGCCCTGGACGTCAT CCGCTTCGTCAGTGACGCCACGCCCCAGGTCGAGGTCTTTCTCTACATGCATCGGCTGGA GTCTGGGAAGCTGCCCCGAAGTCCGTCCTTTCCACTGGAGCCGGAAGATGAAGTCTTTCT TGCCATTGCCAAGGCCATGGAGGAGATGGTGGAGGACAGTGTCGACTGTTACTGGATCAC GCGATGCTTCGTGAACCAGTTAGATAGCAAGTACCGGGACTTTCTGCCCCAGCTGCCGAA GGCATTTGAACAGTACTTGAATCTAGAAGACAGCAGGCTGCTGAGCCATCTGAAGGCGTG CTCTGCAGTGTCCAGACTGCCCTATGATCTCTGGTTCAAGAGGTGCTTTGCCGGGTGCTT GCCGGAACCCAGTTTACAGAGGGTTTGGGATAAAGTTGTCAGTGGATCCTGTAAGATACT AGTTTTTGTGGCTGTGGAAATTCTCTTAACCTTTAAAATAAAAGTAATGGCCCTGAACAG TGCAGAGAAGATAACGAAGTTTCTGGAAAATATTCCCCAGGACAGCTCGGATGCCATCGT GAGCAAGGCCATCGACTTATGGCACAAACACTGCGGGACCCCTGTCCATTCCGCCTGAAC ACTGCGACGCTGTGGACAGTCGGCCAGGCCTGCCCAGAGCATTCTGTGCTTGCGATGTGA TCCCAGCTGATGAGAGGAGAGGGCTCTGGCCTCGGTGCTCAAAGTGTAATTGTCTTTCCA GTAAAGTGGTTGAAGACATCTGGAGTCGCTGTGCTGTGAAGTGGCATCTTTAGGTTACAC AGTACAGTGTTCAGCCCGGAAGAGCATTTTGAAAGGGTCGTTTGAAAATAGCTCCCGGCT TTTAAGGTGGTTGCGTCGGGGTGGGTGGTGCCTCCGACAGCAGGTGTAACCGAGCCTGCC TGCCTCTCTGATCAGCACCACGCTGGTTACTTTCCGAGGTCTGTTTCTGGAAAGAAGAAC AATTTCCTTTTGTTGACAACTCATGATTTGGCTTTTGTCGGTGTGGTAGCTGTTGAAATC GGACTTTCTAGGTCTTGTGAAAACCTAAATCTGCTTTCTGAGACTTCATCTTGCTAAATA GGTTTAAATAAAGGCCTTACTTTTTTTCCCCCTTCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTCCATCCGGCGGCCCCTGGGCGGCCCCCACGTCGTCTGCCCGCTGTCGGGTCAGCGCA CCGGGCCTGGTTCCGCTGCTTCCCCGGACCCATTAGTCTGAATCCGGGTGTGGTTTCCAC TACTAGAGAATGAAACATGACTGACGACTCCCAGAGAAACTTCCGTTCAGTATATTATGA AAAAGTGGGGTTTCGTGGAGTTGAAGAAAAGAAATCATTAGAAATTCTCCTCAAAGATGA CCGTCTGGACATCGAGAAACTCTGTACTTTCAGTCAGAGGTTCCCGCTCCCGTCCCTGTA CCGGGCGTTGGTCTGGAAGGTGCTCCTAGGAATCCTGCCTCCGCACCACGAGTCCCACGC CCGGGTGATGGCCTACCGCAAGGAGCAGTACTCGGACGTCCTCCACGCCCTGGACGTCAT CCGCTTCGTCAGTGACGCCACGCCCCAGGTCGAGGTCTTTCTCTACATGCATCGGCTGGA GTCTGGGAAGCTGCCCCGAAGTCCGTCCTTTCCACTGGAGCCGGAAGATGAAGTCTTTCT TGCCATTGCCAAGGCCATGGAGGAGATGGTGGAGGACAGTGTCGACTGTTACTGGATCAC GCGATGCTTCGTGAACCAGTTAGATAGCAAGTACCGGGACTTTCTGCCCCAGCTGCCGAA GGCATTTGAACAGTACTTGAATCTAGAAGACAGCAGGCTGCTGAGCCATCTGAAGGCGTG CTCTGCAGTGTCCAGACTGCCCTATGATCTCTGGTTCAAGAGGTGCTTTGCCGGGTGCTT GCCGGAACCCAGTTTACAGAGGGTTTGGGATAAAGTTGTCAGTGGATCCTGTAAGATACT AGTTTTTGTGGCTGTGGAAATTCTCTTAACCTTTAAAATAAAAGTAATGGCCCTGAACAG TGCAGAGAAGATAACGAAGTTTCTGGAAAATATTCCCCAGGACAGCTCGGATGCCATCGT GAGCAAGGCCATCGACTTATGGCACAAACACTGCGGGACCCCTGTCCATTCCGCCTGAAC ACTGCGACGCTGTGGACAGTCGGCCAGGCCTGCCCAGAGCATTCTGTGCTTGCGATGTGA TCCCAGCTGATGAGAGGAGAGGGCTCTGGCCTCGGTGCTCAAAGTGTAATTGTCTTTCCA GTAAAGTGGTTGAAGACATCTGGAGTCGCTGTGCTGTGAAGTGGCATCTTTAGGTTACAC AGTACAGTGTTCAGCCCGGAAGAGCATTTTGAAAGGGTCGTTTGAAAATAGCTCCCGGCT TTTAAGGTGGTTGCGTCGGGGTGGGTGGTGCCTCCGACAGCAGGTGTAACCGAGCCTGCC TGCCTCTCTGATCAGCACCACGCTGGTTACTTTCCGAGGTCTGTTTCTGGAAAGAAGAAC AATTTCCTTTTGTTGACAACTCATGATTTGGCTTTTGTCGGTGTGGTAGCTGTTGAAATC GGACTTTCTAGGTCTTGTGAAAACCTAAATCTGCTTTCTGAGACTTCATCTTGCTAAATA GGTTTAAATAAAGGCCTTACTTTTTTTCCCCCTTCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 127-246, gnl|bosTau2|chr23 (38661582-38661463) | |
| 127-246, gnl|canFam2|chr35 (15797094-15797249) | |
| 127-246, gnl|danRer3|chrUn (103519847-103520006) | |
| 127-246, gnl|dasNov1|scaffold_258427 (830-686) | |
| 127-246, gnl|echTel1|scaffold_221792 (2103-1966) | |
| 127-246, gnl|fr1|chrUn (242076744-242076603) | |
| 127-246, gnl|galGal2|chr2 (61966179-61966033) | |
| 127-246, gnl|hg17|chr6 (13434993-13435149) | |
| 127-246, gnl|Hg17|chr6 (13435119-13435000) | |
| 127-246, gnl|loxAfr1|scaffold_7992 (25241-25396) | |
| 127-246, gnl|mm7|chr13 (42610063-42610208) | |
| 127-246, gnl|Mm7|chr13 (42610189-42610070) | |
| 127-246, gnl|monDom2|scaffold_3 (101059122-101059278) | |
| 127-246, gnl|oryCun1|scaffold_120142 (4034-3893) | |
| 127-246, gnl|panTro1|chr5 (13726811-13726967) | |
| 127-246, gnl|rn3|chr17 (27365119-27364968) | |
| 127-246, gnl|tetNig1|chrUn_random (44517721-44517841) | |
| 127-246, gnl|xenTro1|scaffold_278 (945253-945393) | |
| 327-518, gnl|bosTau2|chr23 (38654327-38654136) | |
| 327-518, gnl|canFam2|chr35 (15792351-15792553) | |
| 327-518, gnl|danRer3|chrUn (103513141-103513322) | |
| 327-518, gnl|dasNov1|scaffold_99464 (3951-3749) | |
| 327-518, gnl|echTel1|scaffold_221792 (2376-2192) | |
| 327-518, gnl|fr1|chrUn (242078585-242078401) | |
| 327-518, gnl|galGal2|chr2 (61969568-61969366) | |
| 327-518, gnl|hg17|chr6 (13429114-13429316) | |
| 327-518, gnl|Hg17|chr6 (13429309-13429118) | |
| 327-518, gnl|loxAfr1|scaffold_7992 (22292-22494) | |
| 327-518, gnl|mm7|chr13 (42605540-42605742) | |
| 327-518, gnl|Mm7|chr13 (42605735-42605544) | |
| 327-518, gnl|monDom2|scaffold_3 (101053285-101053484) | |
| 327-518, gnl|oryCun1|scaffold_120142 (7635-7436) | |
| 327-518, gnl|panTro1|chr5 (13720926-13721128) | |
| 327-518, gnl|rn3|chr17 (27369759-27369557) | |
| 327-518, gnl|tetNig1|chrUn_random (44517145-44517322) | |
| 327-518, gnl|xenTro1|scaffold_278 (943872-944074) | |
| 794-930, gnl|bosTau2|chr23 (38642148-38642012) | |
| 794-930, gnl|canFam2|chr35 (15777319-15777497) | |
| 794-930, gnl|danRer3|chrUn (103509685-103509855) | |
| 794-930, gnl|dasNov1|scaffold_57386 (2451-2283) | |
| 794-930, gnl|echTel1|scaffold_315413 (1835-2025) | |
| 794-930, gnl|galGal2|chr2 (61975031-61974860) | |
| 794-930, gnl|hg17|chr6 (13414592-13414766) | |
| 794-930, gnl|Hg17|chr6 (13414746-13414610) | |
| 794-930, gnl|loxAfr1|scaffold_7992 (5106-5284) | |
| 794-930, gnl|mm7|chr13 (42593321-42593490) | |
| 794-930, gnl|Mm7|chr13 (42593473-42593337) | |
| 794-930, gnl|monDom2|scaffold_3 (101040167-101040341) | |
| 794-930, gnl|panTro1|chr5 (13706286-13706460) | |
| 794-930, gnl|rheMac2|chr4 (13274032-13274206) | |
| 794-930, gnl|rn3|chr17 (27379194-27379025) | |
| 794-930, gnl|tetNig1|chrUn_random (44516495-44516633) | |
| 794-930, gnl|xenTro1|scaffold_278 (941488-941655) | |
| 932-1234, gnl|bosTau2|chr23 (38640998-38640685) | |
| 932-1234, gnl|Hg17|chr6 (13413398-13413081) | |
| 932-1234, gnl|Mm7|chr13 (42592246-42591929) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 127-246, gnl|bosTau2|chr23 (38661582-38661463) | |
| 127-246, gnl|canFam2|chr35 (15797094-15797249) | |
| 127-246, gnl|danRer3|chrUn (103519847-103520006) | |
| 127-246, gnl|dasNov1|scaffold_258427 (830-686) | |
| 127-246, gnl|echTel1|scaffold_221792 (2103-1966) | |
| 127-246, gnl|fr1|chrUn (242076744-242076603) | |
| 127-246, gnl|galGal2|chr2 (61966179-61966033) | |
| 127-246, gnl|hg17|chr6 (13434993-13435149) | |
| 127-246, gnl|Hg17|chr6 (13435119-13435000) | |
| 127-246, gnl|loxAfr1|scaffold_7992 (25241-25396) | |
| 127-246, gnl|mm7|chr13 (42610063-42610208) | |
| 127-246, gnl|Mm7|chr13 (42610189-42610070) | |
| 127-246, gnl|monDom2|scaffold_3 (101059122-101059278) | |
| 127-246, gnl|oryCun1|scaffold_120142 (4034-3893) | |
| 127-246, gnl|panTro1|chr5 (13726811-13726967) | |
| 127-246, gnl|rn3|chr17 (27365119-27364968) | |
| 127-246, gnl|tetNig1|chrUn_random (44517721-44517841) | |
| 127-246, gnl|xenTro1|scaffold_278 (945253-945393) | |
| 327-518, gnl|bosTau2|chr23 (38654327-38654136) | |
| 327-518, gnl|canFam2|chr35 (15792351-15792553) | |
| 327-518, gnl|danRer3|chrUn (103513141-103513322) | |
| 327-518, gnl|dasNov1|scaffold_99464 (3951-3749) | |
| 327-518, gnl|echTel1|scaffold_221792 (2376-2192) | |
| 327-518, gnl|fr1|chrUn (242078585-242078401) | |
| 327-518, gnl|galGal2|chr2 (61969568-61969366) | |
| 327-518, gnl|hg17|chr6 (13429114-13429316) | |
| 327-518, gnl|Hg17|chr6 (13429309-13429118) | |
| 327-518, gnl|loxAfr1|scaffold_7992 (22292-22494) | |
| 327-518, gnl|mm7|chr13 (42605540-42605742) | |
| 327-518, gnl|Mm7|chr13 (42605735-42605544) | |
| 327-518, gnl|monDom2|scaffold_3 (101053285-101053484) | |
| 327-518, gnl|oryCun1|scaffold_120142 (7635-7436) | |
| 327-518, gnl|panTro1|chr5 (13720926-13721128) | |
| 327-518, gnl|rn3|chr17 (27369759-27369557) | |
| 327-518, gnl|tetNig1|chrUn_random (44517145-44517322) | |
| 327-518, gnl|xenTro1|scaffold_278 (943872-944074) | |
| 794-930, gnl|bosTau2|chr23 (38642148-38642012) | |
| 794-930, gnl|canFam2|chr35 (15777319-15777497) | |
| 794-930, gnl|danRer3|chrUn (103509685-103509855) | |
| 794-930, gnl|dasNov1|scaffold_57386 (2451-2283) | |
| 794-930, gnl|echTel1|scaffold_315413 (1835-2025) | |
| 794-930, gnl|galGal2|chr2 (61975031-61974860) | |
| 794-930, gnl|hg17|chr6 (13414592-13414766) | |
| 794-930, gnl|Hg17|chr6 (13414746-13414610) | |
| 794-930, gnl|loxAfr1|scaffold_7992 (5106-5284) | |
| 794-930, gnl|mm7|chr13 (42593321-42593490) | |
| 794-930, gnl|Mm7|chr13 (42593473-42593337) | |
| 794-930, gnl|monDom2|scaffold_3 (101040167-101040341) | |
| 794-930, gnl|panTro1|chr5 (13706286-13706460) | |
| 794-930, gnl|rheMac2|chr4 (13274032-13274206) | |
| 794-930, gnl|rn3|chr17 (27379194-27379025) | |
| 794-930, gnl|tetNig1|chrUn_random (44516495-44516633) | |
| 794-930, gnl|xenTro1|scaffold_278 (941488-941655) | |
| 932-1234, gnl|bosTau2|chr23 (38640998-38640685) | |
| 932-1234, gnl|Hg17|chr6 (13413398-13413081) | |
| 932-1234, gnl|Mm7|chr13 (42592246-42591929) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| elu (0.385356) | |
| mcp (0.341297) | |
| hlv (0.278513) | |
| nep (0.183925) | |
| duo (0.172801) | |
| eye (0.170503) | |
| pla (0.133672) | |
| eep (0.122564) | |
| eru (0.120048) | |
| med (0.116252) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| mcp (0.341297) | |
| hlv (0.278513) | |
| nep (0.183925) | |
| duo (0.172801) | |
| eye (0.170503) | |
| pla (0.133672) | |
| eep (0.122564) | |
| eru (0.120048) | |
| med (0.116252) | |
| cty (0.10408) | |
| nbm (0.0993246) |