Non-Coding RNA Search

Ss1.1-Spl1-SPL010011G11.5

Sequence:


               
               GAGAACCCGCGGCCCTTGGGCGGAAGCAGGTTTGCGTGGTGGGAGCCGCAGTCGGCAGTG
CTGTCTCTGCTCACCACTTTCTGCGCCAGGCCGCCATGAAGGACTCGCTGGTGCTGCTTG
GCCGTATCCCGGCGCACCCGGACTCCCGCTGCTGGTTCCTGGCCTGGAACCCCGCGGGAA
CTCTGCTGGCCTCGTGCGGTGGCGATCGTAGCGTCCGCATCTGGGGCAGAGAGGGCGACA
GCTGGATCTGCAAATCTGTCCTCTGTGAAGGCCACCAGCGCACCGTACGGAAGGTGGCCT
GGTCTCCCTGTGGAAATTACCTGGCTTCTGCCAGCTTTGATGCCACCACTTGCATTTGGA
AGAAAAACAAGGATGACTTTGAGTGTGTAACCACTCTAGAAGGCCATGAAAATGAGGTCA
AGTCAGTAGCCTGGGCCCCATCTGGCAACCTCCTTGCTACCTGCAGCCGAGATAAGAGTG
TGTGGGTCTGGGAAGTCGATGAAGAAGATGAGTATGAATGTGTCAGTGTCCTCAACTCCC
ATACACAGGATGTCAAGCATGTGCTTTGGCACCCAAGCCAGGAGCTGTTAGCCTCTGCCA
GCTATGACGACACAGTGAAGCTCTACCGGGAGGAAGAGGATGACTGGGTATGCTGTGCCA
CCCTTGAAGGTCATGAATCCACTGTGTGGAGCTTGGCCTTTGACCCCAGCGGCCAGCGCC
TGGCATCTTGCAGCGATGACCGTACCGTGCGCATCTGGCGCCAGTATCTGCCAGGCAATG
AGCAAGGGGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAACCCGCGGCCCTTGGGCGGAAGCAGGTTTGCGTGGTGGGAGCCGCAGTCGGCAGTG
CTGTCTCTGCTCACCACTTTCTGCGCCAGGCCGCCATGAAGGACTCGCTGGTGCTGCTTG
GCCGTATCCCGGCGCACCCGGACTCCCGCTGCTGGTTCCTGGCCTGGAACCCCGCGGGAA
CTCTGCTGGCCTCGTGCGGTGGCGATCGTAGCGTCCGCATCTGGGGCAGAGAGGGCGACA
GCTGGATCTGCAAATCTGTCCTCTGTGAAGGCCACCAGCGCACCGTACGGAAGGTGGCCT
GGTCTCCCTGTGGAAATTACCTGGCTTCTGCCAGCTTTGATGCCACCACTTGCATTTGGA
AGAAAAACAAGGATGACTTTGAGTGTGTAACCACTCTAGAAGGCCATGAAAATGAGGTCA
AGTCAGTAGCCTGGGCCCCATCTGGCAACCTCCTTGCTACCTGCAGCCGAGATAAGAGTG
TGTGGGTCTGGGAAGTCGATGAAGAAGATGAGTATGAATGTGTCAGTGTCCTCAACTCCC
ATACACAGGATGTCAAGCATGTGCTTTGGCACCCAAGCCAGGAGCTGTTAGCCTCTGCCA
GCTATGACGACACAGTGAAGCTCTACCGGGAGGAAGAGGATGACTGGGTATGCTGTGCCA
CCCTTGAAGGTCATGAATCCACTGTGTGGAGCTTGGCCTTTGACCCCAGCGGCCAGCGCC
TGGCATCTTGCAGCGATGACCGTACCGTGCGCATCTGGCGCCAGTATCTGCCAGGCAATG
AGCAAGGGGTGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61825439|ref|XP_591328.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61825439|ref|XP_591328.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               11-235, gnl|bosTau2|chr11 (1747572-1747343)
               

               
               11-235, gnl|Hg17|chr2 (96353829-96354102)
               

               
               11-235, gnl|Mm7|chr2 (126988574-126988334)
               


               
               382-495, gnl|bosTau2|chr11 (1745928-1745815)
               

               
               382-495, gnl|Hg17|chr2 (96355235-96355348)
               

               
               382-495, gnl|Mm7|chr2 (126987568-126987455)
               


               
               583-792, gnl|bosTau2|chr11 (1745371-1745162)
               

               
               583-792, gnl|Hg17|chr2 (96356067-96356276)
               

               
               583-792, gnl|Mm7|chr2 (126986779-126986570)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-235, gnl|bosTau2|chr11 (1747572-1747343)
               

               
               11-235, gnl|Hg17|chr2 (96353829-96354102)
               

               
               11-235, gnl|Mm7|chr2 (126988574-126988334)
               


               
               382-495, gnl|bosTau2|chr11 (1745928-1745815)
               

               
               382-495, gnl|Hg17|chr2 (96355235-96355348)
               

               
               382-495, gnl|Mm7|chr2 (126987568-126987455)
               


               
               583-792, gnl|bosTau2|chr11 (1745371-1745162)
               

               
               583-792, gnl|Hg17|chr2 (96356067-96356276)
               

               
               583-792, gnl|Mm7|chr2 (126986779-126986570)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mcp (0.170648)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)

	11-235, gnl\|bosTau2\|chr11 (1747572-1747343)
	11-235, gnl\|Hg17\|chr2 (96353829-96354102)
	11-235, gnl\|Mm7\|chr2 (126988574-126988334)

	382-495, gnl\|bosTau2\|chr11 (1745928-1745815)
	382-495, gnl\|Hg17\|chr2 (96355235-96355348)
	382-495, gnl\|Mm7\|chr2 (126987568-126987455)

	583-792, gnl\|bosTau2\|chr11 (1745371-1745162)
	583-792, gnl\|Hg17\|chr2 (96356067-96356276)
	583-792, gnl\|Mm7\|chr2 (126986779-126986570)