Ss1.1-Spl1-SPL010012A04.5
|
TCGAGCTCATGTCTTACCGCCTCAACACCCACGTCAAGCCCTTGATCTGGATTGAGTCTG
TGATTGAAAAGCATTCCCACAGCCGCATTGAATACATGATCAAGGCAAAGAGCCAATTCA
AGCGACGGTCAACAGCCAACAACGTGGAAATCCACATACCCGTGCCCAACGATGCCGACT
CACCCAAGTTCAAGACAACAGTGGGAAGCGTCAAGTGGGTCCCCGAGAACAGTGAGATCG
TGTGGTCCATCAAGTCCTTCCCGGGCGGCAAGGAATACCTGATGCGAGCCCACTTCGGCC
TGCCCAGCGTGGAGGCAGAGGACAAGGAGGGCAAGCCCCCAATCAGCGTCAAGTTCGAGA
TCCCCTACTTCACTACCTCTGGCATCCAGGTGCGCTACCTGAAGATCATCGAGAAGAGCG
GCTACCAGGCCCTGCCATGGGTCCGTTACATCACTCAGAACGGAGATTACCAGCTCCGGA
CCCAGTGAGGCGCTGCGGTGGCCAACACTCCTGCCCCGACAATGGGGCTCCTGGTGGAAG
GGCCAGCCAAGCCTGCAGGAGGGAGGGACTCCCCTGGACACCAGCCACCCTCCCGGCTCC
ACCCAGGGGCCCCTCCTCCTCCAGGTGCACCCGCTCTGCCGCTGCCACTCTCGTCTCCCC
AGTCCCTTCTCCCAGAAGAGGCTCATCTTCAAGAAGTCTCATCTCTGCCCCCAAGTCAGT
TTGAGGGGAAGGAATGAACTCTTTCCCTCCAGAGGTCAAATACAGCCTTCTGTGCTGTTT
AGCTCCCAGTCACCAAAAGACTGGGAAATGCTGGCCATACCACTGGCTGCACGCAGCATC
TGGCCGGACCGGCAGGACCACTGTTTTGTTGCCATTCTGTTGAATGTGTCAGTTTGAGTG
TTCCTGGATTTTTGTCTTGGTCAATCGCTGTTGATGTGAACCTCTCTGTCCACGCCTCCC
GCCCCTCGTCCCAAAGCGCTCAGGCAGCACTTAGGGAGGACAGGACTGCCCCCTTCCTGC
CCCCCCTCCCCAGCGAGGCTGCCGCTGGGCCACCCTCCCACTTGCATTGGAGGCTCCTGG
TCTGGACCCACAGGTTTCACCACAGGCACCTTCCCAGGACCAACCTTTGCCACACAATAC
TGTCACTCAGCTACATCAGTATTTATCCCACCAGGGGAGGTGGGGTCTAGCAAGGGCCCC
CAGCCTCAGAGGGTGGAGGGCATGGGTCATCCACATCCATGCTTGGACACTGCCCCCTTC
AACCCTGACTGTGTCTGTGTCACAATTACATTAAAGTCCATCCATTAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCGAGCTCATGTCTTACCGCCTCAACACCCACGTCAAGCCCTTGATCTGGATTGAGTCTG
TGATTGAAAAGCATTCCCACAGCCGCATTGAATACATGATCAAGGCAAAGAGCCAATTCA
AGCGACGGTCAACAGCCAACAACGTGGAAATCCACATACCCGTGCCCAACGATGCCGACT
CACCCAAGTTCAAGACAACAGTGGGAAGCGTCAAGTGGGTCCCCGAGAACAGTGAGATCG
TGTGGTCCATCAAGTCCTTCCCGGGCGGCAAGGAATACCTGATGCGAGCCCACTTCGGCC
TGCCCAGCGTGGAGGCAGAGGACAAGGAGGGCAAGCCCCCAATCAGCGTCAAGTTCGAGA
TCCCCTACTTCACTACCTCTGGCATCCAGGTGCGCTACCTGAAGATCATCGAGAAGAGCG
GCTACCAGGCCCTGCCATGGGTCCGTTACATCACTCAGAACGGAGATTACCAGCTCCGGA
CCCAGTGAGGCGCTGCGGTGGCCAACACTCCTGCCCCGACAATGGGGCTCCTGGTGGAAG
GGCCAGCCAAGCCTGCAGGAGGGAGGGACTCCCCTGGACACCAGCCACCCTCCCGGCTCC
ACCCAGGGGCCCCTCCTCCTCCAGGTGCACCCGCTCTGCCGCTGCCACTCTCGTCTCCCC
AGTCCCTTCTCCCAGAAGAGGCTCATCTTCAAGAAGTCTCATCTCTGCCCCCAAGTCAGT
TTGAGGGGAAGGAATGAACTCTTTCCCTCCAGAGGTCAAATACAGCCTTCTGTGCTGTTT
AGCTCCCAGTCACCAAAAGACTGGGAAATGCTGGCCATACCACTGGCTGCACGCAGCATC
TGGCCGGACCGGCAGGACCACTGTTTTGTTGCCATTCTGTTGAATGTGTCAGTTTGAGTG
TTCCTGGATTTTTGTCTTGGTCAATCGCTGTTGATGTGAACCTCTCTGTCCACGCCTCCC
GCCCCTCGTCCCAAAGCGCTCAGGCAGCACTTAGGGAGGACAGGACTGCCCCCTTCCTGC
CCCCCCTCCCCAGCGAGGCTGCCGCTGGGCCACCCTCCCACTTGCATTGGAGGCTCCTGG
TCTGGACCCACAGGTTTCACCACAGGCACCTTCCCAGGACCAACCTTTGCCACACAATAC
TGTCACTCAGCTACATCAGTATTTATCCCACCAGGGGAGGTGGGGTCTAGCAAGGGCCCC
CAGCCTCAGAGGGTGGAGGGCATGGGTCATCCACATCCATGCTTGGACACTGCCCCCTTC
AACCCTGACTGTGTCTGTGTCACAATTACATTAAAGTCCATCCATTAA
|
|
gi|25012267|gb|AAN71247.1| |
Protein identifier
|
gi|25012267|gb|AAN71247.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
100-264, gnl|bosTau2|chr7 (5159055-5159219) |
|
100-264, gnl|canFam2|chr20 (49271546-49271376) |
|
100-264, gnl|danRer3|chr23 (46641327-46641158) |
|
100-264, gnl|echTel1|scaffold_48232 (4293-4127) |
|
100-264, gnl|fr1|chrUn (18722146-18721980) |
|
100-264, gnl|galGal2|chr28 (3703036-3702866) |
|
100-264, gnl|hg17|chr19 (16200576-16200746) |
|
100-264, gnl|Hg17|chr19 (16200576-16200740) |
|
100-264, gnl|mm7|chr8 (70776481-70776651) |
|
100-264, gnl|Mm7|chr8 (70776481-70776645) |
|
100-264, gnl|monDom2|scaffold_100 (2669878-2670047) |
|
100-264, gnl|oryCun1|scaffold_194021 (6743-6575) |
|
100-264, gnl|panTro1|chr20 (16881213-16881383) |
|
100-264, gnl|rheMac2|chr19 (15760958-15761128) |
|
100-264, gnl|rn3|chr16 (18012648-18012478) |
|
100-264, gnl|tetNig1|chr15_random (2631416-2631582) |
|
100-264, gnl|xenTro1|scaffold_898 (286274-286443) |
| |
|
464-1308, gnl|bosTau2|chr7 (5164569-5165397) |
|
464-1308, gnl|Hg17|chr19 (16206222-16207150) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
100-264, gnl|bosTau2|chr7 (5159055-5159219) |
|
100-264, gnl|canFam2|chr20 (49271546-49271376) |
|
100-264, gnl|danRer3|chr23 (46641327-46641158) |
|
100-264, gnl|echTel1|scaffold_48232 (4293-4127) |
|
100-264, gnl|fr1|chrUn (18722146-18721980) |
|
100-264, gnl|galGal2|chr28 (3703036-3702866) |
|
100-264, gnl|hg17|chr19 (16200576-16200746) |
|
100-264, gnl|Hg17|chr19 (16200576-16200740) |
|
100-264, gnl|mm7|chr8 (70776481-70776651) |
|
100-264, gnl|Mm7|chr8 (70776481-70776645) |
|
100-264, gnl|monDom2|scaffold_100 (2669878-2670047) |
|
100-264, gnl|oryCun1|scaffold_194021 (6743-6575) |
|
100-264, gnl|panTro1|chr20 (16881213-16881383) |
|
100-264, gnl|rheMac2|chr19 (15760958-15761128) |
|
100-264, gnl|rn3|chr16 (18012648-18012478) |
|
100-264, gnl|tetNig1|chr15_random (2631416-2631582) |
|
100-264, gnl|xenTro1|scaffold_898 (286274-286443) |
| |
|
464-1308, gnl|bosTau2|chr7 (5164569-5165397) |
|
464-1308, gnl|Hg17|chr19 (16206222-16207150) |
|
hyp (0.285673) |
|
ese (0.253004) |
|
jej (0.197844) |
|
nca (0.136874) |
|
pla (0.133672) |
|
ute (0.132784) |
|
cov (0.132153) |
|
eep (0.122564) |
|
ebs (0.118301) |
|
med (0.116252) |
|
eje (0.0988338) |
|
hyp (0.285673) |
|
ese (0.253004) |
|
jej (0.197844) |
|
nca (0.136874) |
|
pla (0.133672) |
|
ute (0.132784) |
|
cov (0.132153) |
|
eep (0.122564) |
|
ebs (0.118301) |
|
med (0.116252) |
|
eje (0.0988338) |
