Ss1.1-Spl1-SPL010012E07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCCCTAGCAACTGAGGGACCGCGGCGGCGCCGGCCTCCCGGGAGCCACGCTAGTGACAG CTGCGCTGCTCAAGGCAGGAAGAGCTCTGAGCTGAGCAGTGGAGGCCCTCCTGGATCGGG ACAGAAGAGGTTATCTTGGAGCCAGTAATGAGCCACCCCGACTACCGGCTGAACCTCCGG TCCCTGGGGACCCCCAGAGGTGTGTCCTCTTTGGTTGGTCCACATGGTGTTGGTGCTTCG CCAGGTGACAAAAAGTCAAAGAACAAGAACACACGAGGGAAGAAAAAGAGCATATTTGAA ACCTACATGTCCAAGGAGGATGTTTCAGAAGGCTTGAAGAGAGGGACACTCATCCAGGGT GTATTGAGAATTAATCCGAAGAAGTTTCATGAAGCCTTCATTCCTTCTCCGGATGGCGAT CGAGACATTTTTATTGATGGGGTTGTCGCTCGTAATAGAGCCTTGAATGGAGATCTGGTG GTCGTGAAGCTGCTTCCAGAGGAGCAGTGGAAGGTAATTAAACCAGAGAGCAATGACAAA GAAACAGAAGGGGCCTATGAATCAGATCTCCCCGAGGAGCTCTGTGGAAGCCATCTCCTG CAGCAGTCTCTGAAAGCCTGTAATGACAGTCCTGATGTCATTATAGAGGCTCAGTTTGAT GACAGTGACTCAGAAGATGGACATGGCAACACACCAAATTCCCTGGTTGATGGTGTTAAG AAACTCTCAGTTTGTGTTCATGAAAAAGGAGAAGAGGGAGCCGGTGCACCAGTTACAAAA GACGAGAACACCCTCATGTCCCAGGACGCAAGAGCCTCCCCAGAGAAGTCGCTGCAGAGA TCAGCAAAGGTGGTTTACATCTTGGAGAAAAAACATTCCCGTGCAGCAACTGGCTTCCTC AAACTCTTGGCTGATAAGAACAGTGAGCTGTTCAGGAAATATGCCCTGTTTTCTCCCTCG GACCACCGAGTGCCTAGAATTTATGTGCCTCTCAAGGACTGTCCCCAGGATTTTGTGACC CGGCCGAAAGATTATGCCAACACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCCCTAGCAACTGAGGGACCGCGGCGGCGCCGGCCTCCCGGGAGCCACGCTAGTGACAG CTGCGCTGCTCAAGGCAGGAAGAGCTCTGAGCTGAGCAGTGGAGGCCCTCCTGGATCGGG ACAGAAGAGGTTATCTTGGAGCCAGTAATGAGCCACCCCGACTACCGGCTGAACCTCCGG TCCCTGGGGACCCCCAGAGGTGTGTCCTCTTTGGTTGGTCCACATGGTGTTGGTGCTTCG CCAGGTGACAAAAAGTCAAAGAACAAGAACACACGAGGGAAGAAAAAGAGCATATTTGAA ACCTACATGTCCAAGGAGGATGTTTCAGAAGGCTTGAAGAGAGGGACACTCATCCAGGGT GTATTGAGAATTAATCCGAAGAAGTTTCATGAAGCCTTCATTCCTTCTCCGGATGGCGAT CGAGACATTTTTATTGATGGGGTTGTCGCTCGTAATAGAGCCTTGAATGGAGATCTGGTG GTCGTGAAGCTGCTTCCAGAGGAGCAGTGGAAGGTAATTAAACCAGAGAGCAATGACAAA GAAACAGAAGGGGCCTATGAATCAGATCTCCCCGAGGAGCTCTGTGGAAGCCATCTCCTG CAGCAGTCTCTGAAAGCCTGTAATGACAGTCCTGATGTCATTATAGAGGCTCAGTTTGAT GACAGTGACTCAGAAGATGGACATGGCAACACACCAAATTCCCTGGTTGATGGTGTTAAG AAACTCTCAGTTTGTGTTCATGAAAAAGGAGAAGAGGGAGCCGGTGCACCAGTTACAAAA GACGAGAACACCCTCATGTCCCAGGACGCAAGAGCCTCCCCAGAGAAGTCGCTGCAGAGA TCAGCAAAGGTGGTTTACATCTTGGAGAAAAAACATTCCCGTGCAGCAACTGGCTTCCTC AAACTCTTGGCTGATAAGAACAGTGAGCTGTTCAGGAAATATGCCCTGTTTTCTCCCTCG GACCACCGAGTGCCTAGAATTTATGTGCCTCTCAAGGACTGTCCCCAGGATTTTGTGACC CGGCCGAAAGATTATGCCAACACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 848-966, - strand, RNAz p=0.617007 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 848-966, - strand, RNAz p=0.617007 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 198-358, gnl|bosTau2|chr2 (72121947-72122107) | |
| 198-358, gnl|Hg17|chr2 (232705727-232705887) | |
| 198-358, gnl|Mm7|chr1 (86646015-86646175) | |
| 512-752, gnl|bosTau2|chr2 (72178807-72179047) | |
| 512-752, gnl|canFam2|chr25 (46873544-46874093) | |
| 512-752, gnl|dasNov1|scaffold_232468 (3667-3131) | |
| 512-752, gnl|galGal2|chr9 (14806601-14807146) | |
| 512-752, gnl|hg17|chr2 (232777526-232778065) | |
| 512-752, gnl|Hg17|chr2 (232777700-232777940) | |
| 512-752, gnl|loxAfr1|scaffold_2241 (37247-36687) | |
| 512-752, gnl|mm7|chr1 (86721772-86722280) | |
| 512-752, gnl|Mm7|chr1 (86721896-86722130) | |
| 512-752, gnl|monDom2|scaffold_167 (596744-597298) | |
| 512-752, gnl|oryCun1|scaffold_189303 (18740-19247) | |
| 512-752, gnl|panTro1|chr13 (123382368-123382907) | |
| 512-752, gnl|rheMac2|chr12 (95941328-95941871) | |
| 512-752, gnl|rn3|chr9 (85759868-85760373) | |
| 848-1044, gnl|bosTau2|chr2 (72215687-72215883) | |
| 848-1044, gnl|canFam2|chr25 (46910819-46911027) | |
| 848-1044, gnl|danRer3|chr2 (37062-36872) | |
| 848-1044, gnl|dasNov1|scaffold_51138 (595-805) | |
| 848-1044, gnl|echTel1|scaffold_280088 (296-88) | |
| 848-1044, gnl|fr1|chrUn (32472391-32472581) | |
| 848-1044, gnl|galGal2|chr9 (14819682-14819890) | |
| 848-1044, gnl|hg17|chr2 (232826686-232826894) | |
| 848-1044, gnl|Hg17|chr2 (232826685-232826881) | |
| 848-1044, gnl|loxAfr1|scaffold_2241 (6975-6767) | |
| 848-1044, gnl|mm7|chr1 (86757802-86758010) | |
| 848-1044, gnl|Mm7|chr1 (86757801-86757997) | |
| 848-1044, gnl|monDom2|scaffold_167 (624585-624793) | |
| 848-1044, gnl|oryCun1|scaffold_189303 (64001-64209) | |
| 848-1044, gnl|panTro1|chr13 (123431614-123431821) | |
| 848-1044, gnl|rheMac2|chr12 (95990225-95990433) | |
| 848-1044, gnl|rn3|chr9 (85818652-85818860) | |
| 848-1044, gnl|tetNig1|chr15 (2553228-2553038) | |
| 848-1044, gnl|xenTro1|scaffold_589 (444583-444791) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 198-358, gnl|bosTau2|chr2 (72121947-72122107) | |
| 198-358, gnl|Hg17|chr2 (232705727-232705887) | |
| 198-358, gnl|Mm7|chr1 (86646015-86646175) | |
| 512-752, gnl|bosTau2|chr2 (72178807-72179047) | |
| 512-752, gnl|canFam2|chr25 (46873544-46874093) | |
| 512-752, gnl|dasNov1|scaffold_232468 (3667-3131) | |
| 512-752, gnl|galGal2|chr9 (14806601-14807146) | |
| 512-752, gnl|hg17|chr2 (232777526-232778065) | |
| 512-752, gnl|Hg17|chr2 (232777700-232777940) | |
| 512-752, gnl|loxAfr1|scaffold_2241 (37247-36687) | |
| 512-752, gnl|mm7|chr1 (86721772-86722280) | |
| 512-752, gnl|Mm7|chr1 (86721896-86722130) | |
| 512-752, gnl|monDom2|scaffold_167 (596744-597298) | |
| 512-752, gnl|oryCun1|scaffold_189303 (18740-19247) | |
| 512-752, gnl|panTro1|chr13 (123382368-123382907) | |
| 512-752, gnl|rheMac2|chr12 (95941328-95941871) | |
| 512-752, gnl|rn3|chr9 (85759868-85760373) | |
| 848-1044, gnl|bosTau2|chr2 (72215687-72215883) | |
| 848-1044, gnl|canFam2|chr25 (46910819-46911027) | |
| 848-1044, gnl|danRer3|chr2 (37062-36872) | |
| 848-1044, gnl|dasNov1|scaffold_51138 (595-805) | |
| 848-1044, gnl|echTel1|scaffold_280088 (296-88) | |
| 848-1044, gnl|fr1|chrUn (32472391-32472581) | |
| 848-1044, gnl|galGal2|chr9 (14819682-14819890) | |
| 848-1044, gnl|hg17|chr2 (232826686-232826894) | |
| 848-1044, gnl|Hg17|chr2 (232826685-232826881) | |
| 848-1044, gnl|loxAfr1|scaffold_2241 (6975-6767) | |
| 848-1044, gnl|mm7|chr1 (86757802-86758010) | |
| 848-1044, gnl|Mm7|chr1 (86757801-86757997) | |
| 848-1044, gnl|monDom2|scaffold_167 (624585-624793) | |
| 848-1044, gnl|oryCun1|scaffold_189303 (64001-64209) | |
| 848-1044, gnl|panTro1|chr13 (123431614-123431821) | |
| 848-1044, gnl|rheMac2|chr12 (95990225-95990433) | |
| 848-1044, gnl|rn3|chr9 (85818652-85818860) | |
| 848-1044, gnl|tetNig1|chr15 (2553228-2553038) | |
| 848-1044, gnl|xenTro1|scaffold_589 (444583-444791) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.132802) |