Ss1.1-Spl1-SPL010013F10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATTTCCGGTGTCCAGGTGCTTGGGTTCTTTGGCAGAAGTAGGAAGATGGAGCTCGGCGC CGCGGCCCGTGCTTGGTCGCTCTTGTGGCTGCTGCTTCCCTTGCTTGGCCTGGTCGGCGC CAGCGGTCCCCGTACCTTAGTGCTTCTGGACAACCTCAACCTGCGGGAGACGCATTCACT TTTCTTCCGGAGCCTAAAGGATCGGGGCTTCGTACTCACATTCAAGACCGCAGATGACCC CAGCCTGTCCCTCATTAAGTACGGAGAGTTCCTCTATGACAATCTCATCGTCTTTTCACC TTCGGTAGAAGATTTTGGAGGAAATATCAACGTGGAGACCATCAGTACCTTTATCGACGG CGGAGGCAGTGTCCTGGTAGCTGCCAGCTCAGACATCGGTGACCCTCTCCGCGAGCTGGG CAGTGAGTGTGGGATTGAGTTTGACGAGGAGAAAACGGCCGTCATTGACCATCACAACTA TGATGTCTCAGACCTCGGCCAGCACACGCTCATTGTGGCCGACACTGAGAACCTGCTGAA GGCCCCGACCATCGTCGGGAAGTCATCTCTGAATCCCATCCTCTTCCGAGGTGTTGGGAT GGTGGCTGATCCTGACAATCCTTTGGTGCTGGACATCCTGACCGGCTCTTCTACCTCTTA CTCCTTCTTCCCAGATAAACCCATCACGCAGTACCCGCACGCGGTGGGGAAGAACACGCT GCTCATCGCGGGGCTGCAGGCCCGGAACAACGCCCGTGTCATCTTCAGCGGCTCCCTCGA CTTCTTCAGCGATGCCTTCTTCAACTCCGCGGTGCAGAAGGCCACGCCTGGCTCCCAGAG GTATCCCCAGACAGGCAACTATGAGCTCGCCGTGGCCCTCTCCCGCTGGGTGTTCAAGGA GGAGGGTGTCCTCCGAGTGGGGCCTGTGTCCCACCATCGGGTGGGCGAGAAAGCCCCACC CAACGCCTACACCGTCACTGACCTAGTCGAGTACAGCATCGTGATTGAGCAGCTCTCAGA GGGCAGATGGGTCCCCTTTGATGGCGACGACATTCAGCTGGAGTTTGTCCGCATCGATCC TTTCGTGAGGACCTTCTTGAAGAGGAAAGGCGGCAAGTACAGCGTCCAGTTCAAGTTGCC GGACGTGTACGGCGTGTTCCAGTTCAAAGTGGACTACAACCGGCTGGGCTACACGCACCT GTACTCCTCCACTCAGGTGTCCGTGCGGCCCCTGCAGCACACGCAGTACGAGCGCTTCAT CCCCTCGGCTTACCCCTACTACGCCAGCGCCTTCTCCATGATGGTCGGGCTCTTCATCTT CAGCGTCGTCTTCTTGCACATGAAGGAGAAGGAGAAGTCTGACTGAGGGGCCGGGCCGGG CCCCAGGACTCCTTACAACACACAGGGAGGGTTTTTATAGGCTTGCCTCCCCCCCCTTTA TGGTGGGCTTTGTTTGTTTTTAAAGCCACGGACAATGGCACAGCTTACCTCAGTGGGAGA TGCAAGATGAGTACCAGGGGGGTGGTTAGGAATAATTTCTAAGTTTTTCCACCTTGAATG CTGAGTGGTATTTTTTCATATGTAAAGTCAACTGATTTCTAAAATAAAAGAAAAACATCA CCCTCAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATTTCCGGTGTCCAGGTGCTTGGGTTCTTTGGCAGAAGTAGGAAGATGGAGCTCGGCGC CGCGGCCCGTGCTTGGTCGCTCTTGTGGCTGCTGCTTCCCTTGCTTGGCCTGGTCGGCGC CAGCGGTCCCCGTACCTTAGTGCTTCTGGACAACCTCAACCTGCGGGAGACGCATTCACT TTTCTTCCGGAGCCTAAAGGATCGGGGCTTCGTACTCACATTCAAGACCGCAGATGACCC CAGCCTGTCCCTCATTAAGTACGGAGAGTTCCTCTATGACAATCTCATCGTCTTTTCACC TTCGGTAGAAGATTTTGGAGGAAATATCAACGTGGAGACCATCAGTACCTTTATCGACGG CGGAGGCAGTGTCCTGGTAGCTGCCAGCTCAGACATCGGTGACCCTCTCCGCGAGCTGGG CAGTGAGTGTGGGATTGAGTTTGACGAGGAGAAAACGGCCGTCATTGACCATCACAACTA TGATGTCTCAGACCTCGGCCAGCACACGCTCATTGTGGCCGACACTGAGAACCTGCTGAA GGCCCCGACCATCGTCGGGAAGTCATCTCTGAATCCCATCCTCTTCCGAGGTGTTGGGAT GGTGGCTGATCCTGACAATCCTTTGGTGCTGGACATCCTGACCGGCTCTTCTACCTCTTA CTCCTTCTTCCCAGATAAACCCATCACGCAGTACCCGCACGCGGTGGGGAAGAACACGCT GCTCATCGCGGGGCTGCAGGCCCGGAACAACGCCCGTGTCATCTTCAGCGGCTCCCTCGA CTTCTTCAGCGATGCCTTCTTCAACTCCGCGGTGCAGAAGGCCACGCCTGGCTCCCAGAG GTATCCCCAGACAGGCAACTATGAGCTCGCCGTGGCCCTCTCCCGCTGGGTGTTCAAGGA GGAGGGTGTCCTCCGAGTGGGGCCTGTGTCCCACCATCGGGTGGGCGAGAAAGCCCCACC CAACGCCTACACCGTCACTGACCTAGTCGAGTACAGCATCGTGATTGAGCAGCTCTCAGA GGGCAGATGGGTCCCCTTTGATGGCGACGACATTCAGCTGGAGTTTGTCCGCATCGATCC TTTCGTGAGGACCTTCTTGAAGAGGAAAGGCGGCAAGTACAGCGTCCAGTTCAAGTTGCC GGACGTGTACGGCGTGTTCCAGTTCAAAGTGGACTACAACCGGCTGGGCTACACGCACCT GTACTCCTCCACTCAGGTGTCCGTGCGGCCCCTGCAGCACACGCAGTACGAGCGCTTCAT CCCCTCGGCTTACCCCTACTACGCCAGCGCCTTCTCCATGATGGTCGGGCTCTTCATCTT CAGCGTCGTCTTCTTGCACATGAAGGAGAAGGAGAAGTCTGACTGAGGGGCCGGGCCGGG CCCCAGGACTCCTTACAACACACAGGGAGGGTTTTTATAGGCTTGCCTCCCCCCCCTTTA TGGTGGGCTTTGTTTGTTTTTAAAGCCACGGACAATGGCACAGCTTACCTCAGTGGGAGA TGCAAGATGAGTACCAGGGGGGTGGTTAGGAATAATTTCTAAGTTTTTCCACCTTGAATG CTGAGTGGTATTTTTTCATATGTAAAGTCAACTGATTTCTAAAATAAAAGAAAAACATCA CCCTCAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 870-987, - strand, RNAz p=0.741774 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 870-987, - strand, RNAz p=0.741774 |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 1-182, gnl|bosTau2|chr2 (85704448-85704625) | |
| 1-182, gnl|Hg17|chr1 (20733194-20733014) | |
| 1-182, gnl|Mm7|chr4 (137683281-137683462) | |
| 310-422, gnl|bosTau2|chr17 (42021829-42021714) | |
| 310-422, gnl|canFam2|chr2 (81165510-81165391) | |
| 310-422, gnl|danRer3|chr23 (33084939-33084844) | |
| 310-422, gnl|dasNov1|scaffold_7062 (11604-11474) | |
| 310-422, gnl|echTel1|scaffold_220249 (2203-2073) | |
| 310-422, gnl|fr1|chrUn (105035653-105035537) | |
| 310-422, gnl|galGal2|chrUn (86345726-86345858) | |
| 310-422, gnl|hg17|chr1 (20727873-20728003) | |
| 310-422, gnl|Hg17|chr1 (20727988-20727873) | |
| 310-422, gnl|loxAfr1|scaffold_9316 (3834-3702) | |
| 310-422, gnl|mm7|chr4 (137686799-137686669) | |
| 310-422, gnl|Mm7|chr4 (137686682-137686797) | |
| 310-422, gnl|panTro1|chr1 (21045193-21045323) | |
| 310-422, gnl|rheMac2|chr1 (23320446-23320576) | |
| 310-422, gnl|rn3|chr5 (157096728-157096598) | |
| 310-422, gnl|tetNig1|chrUn_random (28365075-28365169) | |
| 310-422, gnl|xenTro1|scaffold_1007 (282657-282760) | |
| 839-987, gnl|bosTau2|chr17 (42020268-42020120) | |
| 839-987, gnl|canFam2|chr2 (81168198-81168067) | |
| 839-987, gnl|danRer3|chr23 (33089525-33089394) | |
| 839-987, gnl|dasNov1|scaffold_187620 (1157-1026) | |
| 839-987, gnl|echTel1|scaffold_220249 (4607-4476) | |
| 839-987, gnl|fr1|chrUn (105037387-105037256) | |
| 839-987, gnl|galGal2|chrUn (86342690-86342821) | |
| 839-987, gnl|hg17|chr1 (20725422-20725553) | |
| 839-987, gnl|Hg17|chr1 (20725575-20725427) | |
| 839-987, gnl|loxAfr1|scaffold_9316 (6723-6592) | |
| 839-987, gnl|mm7|chr4 (137689435-137689304) | |
| 839-987, gnl|Mm7|chr4 (137689280-137689428) | |
| 839-987, gnl|monDom2|scaffold_90 (2103717-2103848) | |
| 839-987, gnl|panTro1|chr1 (21042755-21042886) | |
| 839-987, gnl|rheMac2|chr1 (23317874-23318005) | |
| 839-987, gnl|tetNig1|chrUn_random (28363676-28363807) | |
| 989-1110, gnl|bosTau2|chr17 (42019605-42019484) | |
| 989-1110, gnl|canFam2|chr2 (81168882-81168715) | |
| 989-1110, gnl|danRer3|chr23 (33089842-33089665) | |
| 989-1110, gnl|echTel1|scaffold_220249 (5194-5041) | |
| 989-1110, gnl|fr1|chrUn (105037712-105037582) | |
| 989-1110, gnl|galGal2|chrUn (86342328-86342474) | |
| 989-1110, gnl|hg17|chr1 (20724635-20724809) | |
| 989-1110, gnl|Hg17|chr1 (20724770-20724649) | |
| 989-1110, gnl|loxAfr1|scaffold_9316 (7488-7318) | |
| 989-1110, gnl|mm7|chr4 (137689988-137689833) | |
| 989-1110, gnl|Mm7|chr4 (137689851-137689972) | |
| 989-1110, gnl|monDom2|scaffold_90 (2103361-2103535) | |
| 989-1110, gnl|panTro1|chr1 (21041968-21042142) | |
| 989-1110, gnl|rn3|chr5 (157099532-157099371) | |
| 989-1110, gnl|tetNig1|chrUn_random (28363306-28363444) | |
| 989-1110, gnl|xenTro1|scaffold_1007 (278861-279013) | |
| 1214-1626, gnl|bosTau2|chr17 (42019163-42018754) | |
| 1214-1626, gnl|Hg17|chr1 (20724330-20723578) | |
| 1214-1626, gnl|Mm7|chr4 (137690272-137690667) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-182, gnl|bosTau2|chr2 (85704448-85704625) | |
| 1-182, gnl|Hg17|chr1 (20733194-20733014) | |
| 1-182, gnl|Mm7|chr4 (137683281-137683462) | |
| 310-422, gnl|bosTau2|chr17 (42021829-42021714) | |
| 310-422, gnl|canFam2|chr2 (81165510-81165391) | |
| 310-422, gnl|danRer3|chr23 (33084939-33084844) | |
| 310-422, gnl|dasNov1|scaffold_7062 (11604-11474) | |
| 310-422, gnl|echTel1|scaffold_220249 (2203-2073) | |
| 310-422, gnl|fr1|chrUn (105035653-105035537) | |
| 310-422, gnl|galGal2|chrUn (86345726-86345858) | |
| 310-422, gnl|hg17|chr1 (20727873-20728003) | |
| 310-422, gnl|Hg17|chr1 (20727988-20727873) | |
| 310-422, gnl|loxAfr1|scaffold_9316 (3834-3702) | |
| 310-422, gnl|mm7|chr4 (137686799-137686669) | |
| 310-422, gnl|Mm7|chr4 (137686682-137686797) | |
| 310-422, gnl|panTro1|chr1 (21045193-21045323) | |
| 310-422, gnl|rheMac2|chr1 (23320446-23320576) | |
| 310-422, gnl|rn3|chr5 (157096728-157096598) | |
| 310-422, gnl|tetNig1|chrUn_random (28365075-28365169) | |
| 310-422, gnl|xenTro1|scaffold_1007 (282657-282760) | |
| 839-987, gnl|bosTau2|chr17 (42020268-42020120) | |
| 839-987, gnl|canFam2|chr2 (81168198-81168067) | |
| 839-987, gnl|danRer3|chr23 (33089525-33089394) | |
| 839-987, gnl|dasNov1|scaffold_187620 (1157-1026) | |
| 839-987, gnl|echTel1|scaffold_220249 (4607-4476) | |
| 839-987, gnl|fr1|chrUn (105037387-105037256) | |
| 839-987, gnl|galGal2|chrUn (86342690-86342821) | |
| 839-987, gnl|hg17|chr1 (20725422-20725553) | |
| 839-987, gnl|Hg17|chr1 (20725575-20725427) | |
| 839-987, gnl|loxAfr1|scaffold_9316 (6723-6592) | |
| 839-987, gnl|mm7|chr4 (137689435-137689304) | |
| 839-987, gnl|Mm7|chr4 (137689280-137689428) | |
| 839-987, gnl|monDom2|scaffold_90 (2103717-2103848) | |
| 839-987, gnl|panTro1|chr1 (21042755-21042886) | |
| 839-987, gnl|rheMac2|chr1 (23317874-23318005) | |
| 839-987, gnl|tetNig1|chrUn_random (28363676-28363807) | |
| 989-1110, gnl|bosTau2|chr17 (42019605-42019484) | |
| 989-1110, gnl|canFam2|chr2 (81168882-81168715) | |
| 989-1110, gnl|danRer3|chr23 (33089842-33089665) | |
| 989-1110, gnl|echTel1|scaffold_220249 (5194-5041) | |
| 989-1110, gnl|fr1|chrUn (105037712-105037582) | |
| 989-1110, gnl|galGal2|chrUn (86342328-86342474) | |
| 989-1110, gnl|hg17|chr1 (20724635-20724809) | |
| 989-1110, gnl|Hg17|chr1 (20724770-20724649) | |
| 989-1110, gnl|loxAfr1|scaffold_9316 (7488-7318) | |
| 989-1110, gnl|mm7|chr4 (137689988-137689833) | |
| 989-1110, gnl|Mm7|chr4 (137689851-137689972) | |
| 989-1110, gnl|monDom2|scaffold_90 (2103361-2103535) | |
| 989-1110, gnl|panTro1|chr1 (21041968-21042142) | |
| 989-1110, gnl|rn3|chr5 (157099532-157099371) | |
| 989-1110, gnl|tetNig1|chrUn_random (28363306-28363444) | |
| 989-1110, gnl|xenTro1|scaffold_1007 (278861-279013) | |
| 1214-1626, gnl|bosTau2|chr17 (42019163-42018754) | |
| 1214-1626, gnl|Hg17|chr1 (20724330-20723578) | |
| 1214-1626, gnl|Mm7|chr4 (137690272-137690667) |
| Expressed library(ies): 32 entry(ies) | More info |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
| clu (1.19646) | |
| cov (1.18937) | |
| cty (1.0408) | |
| cga (0.558191) | |
| ute (0.531138) | |
| nco (0.485201) | |
| amn (0.417711) | |
| col (0.390016) | |
| nep (0.36785) | |
| cly (0.361925) | |
| eru (0.360144) | |
| duo (0.345602) | |
| cbl (0.344392) | |
| eye (0.341006) | |
| cag (0.302389) | |
| jej (0.296765) | |
| che (0.272628) | |
| nmm (0.265604) | |
| ese (0.253004) | |
| eep (0.245128) | |
| jca (0.22792) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| pty (0.142714) | |
| cst (0.140036) | |
| nca (0.136874) | |
| pgl (0.118483) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (1.19646) | |
| cov (1.18937) | |
| cty (1.0408) | |
| cga (0.558191) | |
| ute (0.531138) | |
| nco (0.485201) | |
| amn (0.417711) | |
| col (0.390016) | |
| nep (0.36785) | |
| cly (0.361925) | |
| eru (0.360144) | |
| duo (0.345602) | |
| cbl (0.344392) | |
| eye (0.341006) | |
| cag (0.302389) | |
| jej (0.296765) | |
| che (0.272628) | |
| nmm (0.265604) | |
| ese (0.253004) | |
| eep (0.245128) | |
| jca (0.22792) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| pty (0.142714) | |
| cst (0.140036) | |
| nca (0.136874) | |
| pgl (0.118483) | |
| nbm (0.0993246) | |
| eje (0.0988338) |