Non-Coding RNA Search

Ss1.1-Spl1-SPL010013F11.5

Sequence:


               
               AACCAATCAGTAATTTCTAGGTTTTTCTCTGTTTAAAGTGTAAGAGTTTAAACTTTCACA
TTCTATTAAAGTTTAGCCCTAAAATGACAAGCTTTCCTAAAGCCTTATTTTTCAGAAGCC
CCTGTTCTTGCTCAGATGAAGAGTTGCCAAAATCCCTTGTGAGCCAAGTTGCGTTGTTGG
GCTGAGAACACTAAGCACTAAGCTGTTGACAGAGGCCTCTCTCCCTGCGAGACCGTCCCT
TCCGAGGCCGGCGGCTTTCCACCGTGAAGGGCGGGCGTAGCGCCTCCTTCGCGAAACGTC
GCCACGGAGCGCACCCTCGTCTATCCGCCCGTGCCCATGACCTGACGTTGTACTGTGCGT
CCTGGCGAGGAGGTGACAGCGCAGCTCTCTGCATCAAGCTCTGATTGCGTAGTGAGGGTT
TCTTTAAGCGATGAGTGTACTAGCTTTCGTGAGACCTTGAACTGAACTCCTGCTCACGTG
TTCCCTCCGGCGAGGTGTTCTGGCCGTGGGTGCGCGGGGTGGAGCGTGGGGAGCGCCTGT
GATCGAAGGATGAAGACAGTATTTTGACAAGATACGGAGGTTAATTTACACTACATTGTA
CACGAAATAGTGAAACTATTGAAAGTGTCACGGGTACAAGTTTTAAAAGGTTGATTGCTG
TCAAGTGAGTAGATGATGAAAGGCTGGTGTTATCAGTTAGTGTTTTCTTAAGCTCTTGCT
TTTTCTTCACCCTGCCCTTCCCTCCTGAAATTGGGCGTTGGAATCCCTTTTTGACTTGGT
CCTTCTCATAGTTGCTAACTTAGTGCTTTCCTTATAGAATCCCTTCTTAACGAGCAATAT
GCCTCCTTGTATTATAAAATCCTTCTGAGTGAGCGTTAGAAACATCCTTTGGTAGGTCGT
AAAAGTGCATTCCTCATCTCACGTTACTTTATTCACGGCTACTCAGTGCTTTCCTTAGTT
TTCTAGTACCTGGGTGTAAACATCCTGTGTTGCAGCTTTACAGTTTTTAAGACACTTTAG
ATCTTCTTAGACGGTAACCTTCTCACCATCACTGTCTCTTCGTCCCTGACGCCGCACCCT
GACTAATGAACACTGACCCTCCTGCCCCCCCCCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACCAATCAGTAATTTCTAGGTTTTTCTCTGTTTAAAGTGTAAGAGTTTAAACTTTCACA
TTCTATTAAAGTTTAGCCCTAAAATGACAAGCTTTCCTAAAGCCTTATTTTTCAGAAGCC
CCTGTTCTTGCTCAGATGAAGAGTTGCCAAAATCCCTTGTGAGCCAAGTTGCGTTGTTGG
GCTGAGAACACTAAGCACTAAGCTGTTGACAGAGGCCTCTCTCCCTGCGAGACCGTCCCT
TCCGAGGCCGGCGGCTTTCCACCGTGAAGGGCGGGCGTAGCGCCTCCTTCGCGAAACGTC
GCCACGGAGCGCACCCTCGTCTATCCGCCCGTGCCCATGACCTGACGTTGTACTGTGCGT
CCTGGCGAGGAGGTGACAGCGCAGCTCTCTGCATCAAGCTCTGATTGCGTAGTGAGGGTT
TCTTTAAGCGATGAGTGTACTAGCTTTCGTGAGACCTTGAACTGAACTCCTGCTCACGTG
TTCCCTCCGGCGAGGTGTTCTGGCCGTGGGTGCGCGGGGTGGAGCGTGGGGAGCGCCTGT
GATCGAAGGATGAAGACAGTATTTTGACAAGATACGGAGGTTAATTTACACTACATTGTA
CACGAAATAGTGAAACTATTGAAAGTGTCACGGGTACAAGTTTTAAAAGGTTGATTGCTG
TCAAGTGAGTAGATGATGAAAGGCTGGTGTTATCAGTTAGTGTTTTCTTAAGCTCTTGCT
TTTTCTTCACCCTGCCCTTCCCTCCTGAAATTGGGCGTTGGAATCCCTTTTTGACTTGGT
CCTTCTCATAGTTGCTAACTTAGTGCTTTCCTTATAGAATCCCTTCTTAACGAGCAATAT
GCCTCCTTGTATTATAAAATCCTTCTGAGTGAGCGTTAGAAACATCCTTTGGTAGGTCGT
AAAAGTGCATTCCTCATCTCACGTTACTTTATTCACGGCTACTCAGTGCTTTCCTTAGTT
TTCTAGTACCTGGGTGTAAACATCCTGTGTTGCAGCTTTACAGTTTTTAAGACACTTTAG
ATCTTCTTAGACGGTAACCTTCTCACCATCACTGTCTCTTCGTCCCTGACGCCGCACCCT
GACTAATGAACACTGACCCTCCTGCCCCCCCCCCCC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1106, gnl|bosTau2|chr25 (33359031-33360141)
               

               
               1-1106, gnl|Hg17|chr7 (6215480-6216571)
               

               
               1-1106, gnl|Mm7|chr5 (142539131-142538027)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1106, gnl|bosTau2|chr25 (33359031-33360141)
               

               
               1-1106, gnl|Hg17|chr7 (6215480-6216571)
               

               
               1-1106, gnl|Mm7|chr5 (142539131-142538027)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

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               tbr (1.07925)
               

               
               pla (0.401016)
               

               
               col (0.390016)
               

               
               cly (0.361925)
               

               
               fhi (0.339155)
               

               
               nco (0.323468)
               

               
               lin (0.291206)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (1.07925)
               

               
               pla (0.401016)
               

               
               col (0.390016)
               

               
               cly (0.361925)
               

               
               fhi (0.339155)
               

               
               nco (0.323468)
               

               
               lin (0.291206)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

	1-1106, gnl\|bosTau2\|chr25 (33359031-33360141)
	1-1106, gnl\|Hg17\|chr7 (6215480-6216571)
	1-1106, gnl\|Mm7\|chr5 (142539131-142538027)

	tbr (1.07925)
	pla (0.401016)
	col (0.390016)
	cly (0.361925)
	fhi (0.339155)
	nco (0.323468)
	lin (0.291206)
	hyp (0.285673)
	fce (0.271592)
	thg (0.253582)
	cbe (0.239234)
	nms (0.213858)
	fcc (0.197785)
	nlu (0.191681)
	ill (0.175593)
	mcp (0.170648)
	eli (0.151814)
	isp (0.150376)
	bfe (0.149858)
	spl (0.143184)
	ese (0.126502)
	eru (0.120048)
	ecc (0.115035)
	jej (0.0989218)