Non-Coding RNA Search

Ss1.1-Spl1-SPL010013G09.5

Sequence:


               
               AAGGGGAGCCGGGAAGAGGCGCTACTGCTGCTACTTTCTCATCTACGGAACCTGACCCCT
CCCGGGACCCGTGATGCCAAGGCAGCTGCGAGGGGCAACGAACTGTCGGGCTTGAGCCCC
AGCTGAGGCTCGCGCTTTTCGGGTCTCCTGGGCCCGCCCCACCTGAAGAAATGAGTGGTG
GATTAGCCCCAAGTAAAAGCACAGTGTATGTATCCAACTTGCCCTTTTCCCTGACCAACA
ATGACTTATATCGGATATTTTCCAAGTATGGCAAAGTCGTAAAGGTTACTATAATGAAAG
ATAAAGATACCAGGAAGAGTAAAGGGGTTGCATTTATTTTATTTTTGGATAAAGACTCTG
CACAAAACTGTACCAGGGCAATAAACAACAAACAGTTATTTGGTAGAGTAATAAAAGCAA
GCATTGCTATTGACAATGGAAGAGCAGCTGAGTTCATCCGAAGACGAAACTACTTTGATA
AATCCAAGTGTTATGAATGTGGGGAAAGTGGACACTTAAGTTATGCCTGTCCTAAAAACA
TGCTTGGAGAACGTGAACCTCCAAAGAAGAAAGAGAAAAAGAAAAAAAAAGAAAATTCCT
GAACCAGAGGAAGAAATTGAAGAAGTGGAAGAAAGTGATGATGAAGGGGAAGATCCTGCT
CTTGACAGCCTCAGCCAGGCCATAGCTTTCCAGCAAGCCAAAATTGAAGAAGAACAAAGA
AAATGGAAACCCAGTTCAGGGGGTCCTTCAACATCAGATGATTCAAGACGTCCAAGGATA
AAGAAAAGCACATACTTCAGTGACGAGGAGGAACTTTAGTGATTAAACTTATATTTATTA
TGTAAATATCATTGAAAAAATTGTAAAGCTTGGAATACCAAGTTTGGTTGGGACTAAAGA
ATTACTTTTAGAATTTGAACATCAGAACACTTAGTACCAAATAGTTTTTTTACTTTAAAA
TAGTTTGTAGGAAATTGAAAAGTAATTTTAAAGTATCATGTTTCTATCTTGCATCAAGAT
TTGCTAATAACCATTAATCTTCAAAACAGTTCATTTGAATAAAAAAGAAAACATAAAACT
ATCATAATAATGCTGTTGGCATCCCAAGAAAAAAGACAGATATTAAAAAGATTTGTTTGA
GAAGTTCATTATAAAAGTTTGCATCTGATTTGATTGGTTTACATAAGGACATTTGAAATA
AATTTCATCTTTAAAACAAAAACTTCATAAAGGCTGGGAAAAGTTGAATGACTTTTTGTT
ATTAAATGTGGAGTTCCCGTTGTGGCTTGTCATTAAATGTTAATAAAATTTTCTCAAGAG
AATTTTATTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGGGAGCCGGGAAGAGGCGCTACTGCTGCTACTTTCTCATCTACGGAACCTGACCCCT
CCCGGGACCCGTGATGCCAAGGCAGCTGCGAGGGGCAACGAACTGTCGGGCTTGAGCCCC
AGCTGAGGCTCGCGCTTTTCGGGTCTCCTGGGCCCGCCCCACCTGAAGAAATGAGTGGTG
GATTAGCCCCAAGTAAAAGCACAGTGTATGTATCCAACTTGCCCTTTTCCCTGACCAACA
ATGACTTATATCGGATATTTTCCAAGTATGGCAAAGTCGTAAAGGTTACTATAATGAAAG
ATAAAGATACCAGGAAGAGTAAAGGGGTTGCATTTATTTTATTTTTGGATAAAGACTCTG
CACAAAACTGTACCAGGGCAATAAACAACAAACAGTTATTTGGTAGAGTAATAAAAGCAA
GCATTGCTATTGACAATGGAAGAGCAGCTGAGTTCATCCGAAGACGAAACTACTTTGATA
AATCCAAGTGTTATGAATGTGGGGAAAGTGGACACTTAAGTTATGCCTGTCCTAAAAACA
TGCTTGGAGAACGTGAACCTCCAAAGAAGAAAGAGAAAAAGAAAAAAAAAGAAAATTCCT
GAACCAGAGGAAGAAATTGAAGAAGTGGAAGAAAGTGATGATGAAGGGGAAGATCCTGCT
CTTGACAGCCTCAGCCAGGCCATAGCTTTCCAGCAAGCCAAAATTGAAGAAGAACAAAGA
AAATGGAAACCCAGTTCAGGGGGTCCTTCAACATCAGATGATTCAAGACGTCCAAGGATA
AAGAAAAGCACATACTTCAGTGACGAGGAGGAACTTTAGTGATTAAACTTATATTTATTA
TGTAAATATCATTGAAAAAATTGTAAAGCTTGGAATACCAAGTTTGGTTGGGACTAAAGA
ATTACTTTTAGAATTTGAACATCAGAACACTTAGTACCAAATAGTTTTTTTACTTTAAAA
TAGTTTGTAGGAAATTGAAAAGTAATTTTAAAGTATCATGTTTCTATCTTGCATCAAGAT
TTGCTAATAACCATTAATCTTCAAAACAGTTCATTTGAATAAAAAAGAAAACATAAAACT
ATCATAATAATGCTGTTGGCATCCCAAGAAAAAAGACAGATATTAAAAAGATTTGTTTGA
GAAGTTCATTATAAAAGTTTGCATCTGATTTGATTGGTTTACATAAGGACATTTGAAATA
AATTTCATCTTTAAAACAAAAACTTCATAAAGGCTGGGAAAAGTTGAATGACTTTTTGTT
ATTAAATGTGGAGTTCCCGTTGTGGCTTGTCATTAAATGTTAATAAAATTTTCTCAAGAG
AATTTTATTTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q6PJX0_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q6PJX0_HUMAN

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

Help | Less info


               
               147-1270, gnl|bosTau2|chr21 (1346200-1345109)

Aligned organism(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               147-1270, gnl|bosTau2|chr21 (1346200-1345109)

Expressed library(ies): 22 entry(ies)

More info

Expressed library(ies): 22 entry(ies)

Help | Less info


               
               hea (0.613497)
               

               
               gul (0.355177)
               

               
               pgl (0.236967)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.613497)
               

               
               gul (0.355177)
               

               
               pgl (0.236967)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	hea (0.613497)
	gul (0.355177)
	pgl (0.236967)
	ece (0.229305)
	jca (0.22792)
	tes (0.207814)
	nlu (0.191681)
	cmu (0.186393)
	fbs (0.175346)
	cki (0.165235)
	fco (0.157208)
	spl (0.143184)
	hlv (0.139256)
	ssp (0.13552)
	kid (0.129735)
	ova (0.129132)
	ret (0.128733)
	thg (0.126791)
	clu (0.119646)
	med (0.116252)
	cty (0.10408)
	eje (0.0988338)