Non-Coding RNA Search

Ss1.1-Spl1-SPL010014D05.5

Sequence:


               
               CCCAGACCCCAAGGCCTCCCAGCACTTTGCCAGAGTGGCGGTTGTGCAGCACGCGCCCTG
GGAGTCTGTGGGCAACGCCAGCGTGCCGCCCGTGAAGGTGGACTTCTCCCTGACTGACTA
CGGCTCCAAGGAGAAGCTGGTGGCCTTCCTCAGCAGCCGGATGACACAGCTGCAGGGGAC
CAGGGCCTTGGGCAGCGCCATCTACTACACCGTTGAGAACGTCTTTGAGAGCGCACCGAA
CCCCCGGGACCTGAAGATCGTGGTCCTGATGCTGACGGGCGAGGTGCAGAAGGAGCAGCT
GGAGGAGGCCCAGAGAGCCATCCTGCAGGCCAAGTGCAAGGGTTACTTCTTCGTGATCCT
GGGCATTGGCCGGAAGGTGAACGTCAAGGAGCTGTACAGCTTCGCCAGCGAGCCCAACGA
CGTCTTCTTCAAACTGGTGGACAAGTCCTCCGAGCTCAACGAGGAGCCCCTGATGCGCTT
TGGGAGGCTGTTACCATCCTTTGTCAGCAGTGAGAATGCTTTTTACCTGTCCCCAGATGT
CCGGAAACAGTGTGATTGGTTCCAAGGGGACCAGCCGGCAAAGAATCTTGTCAAGTTTGG
TCACAAACAAGTAAATGTCCCAAATAACATTACTTCAAGTCCTGCATCCAAACCGGTGAC
CACGACAAAGCCGGTGACCACCACAGAACCCGTGACTGCTACCACCAAGCCAGTAACTAT
GGTGAACCTACCAGCCTCAAAGCTGGCTGCCCCGAAACCTGTGGCTGGGAGACCGGTGGC
CACCAAGACAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAGACCCCAAGGCCTCCCAGCACTTTGCCAGAGTGGCGGTTGTGCAGCACGCGCCCTG
GGAGTCTGTGGGCAACGCCAGCGTGCCGCCCGTGAAGGTGGACTTCTCCCTGACTGACTA
CGGCTCCAAGGAGAAGCTGGTGGCCTTCCTCAGCAGCCGGATGACACAGCTGCAGGGGAC
CAGGGCCTTGGGCAGCGCCATCTACTACACCGTTGAGAACGTCTTTGAGAGCGCACCGAA
CCCCCGGGACCTGAAGATCGTGGTCCTGATGCTGACGGGCGAGGTGCAGAAGGAGCAGCT
GGAGGAGGCCCAGAGAGCCATCCTGCAGGCCAAGTGCAAGGGTTACTTCTTCGTGATCCT
GGGCATTGGCCGGAAGGTGAACGTCAAGGAGCTGTACAGCTTCGCCAGCGAGCCCAACGA
CGTCTTCTTCAAACTGGTGGACAAGTCCTCCGAGCTCAACGAGGAGCCCCTGATGCGCTT
TGGGAGGCTGTTACCATCCTTTGTCAGCAGTGAGAATGCTTTTTACCTGTCCCCAGATGT
CCGGAAACAGTGTGATTGGTTCCAAGGGGACCAGCCGGCAAAGAATCTTGTCAAGTTTGG
TCACAAACAAGTAAATGTCCCAAATAACATTACTTCAAGTCCTGCATCCAAACCGGTGAC
CACGACAAAGCCGGTGACCACCACAGAACCCGTGACTGCTACCACCAAGCCAGTAACTAT
GGTGAACCTACCAGCCTCAAAGCTGGCTGCCCCGAAACCTGTGGCTGGGAGACCGGTGGC
CACCAAGACAGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-94, + strand, RNAz p=0.938136
               

               
               175-294, - strand, RNAz p=0.771447

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-94, + strand, RNAz p=0.938136
               

               
               175-294, - strand, RNAz p=0.771447

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-514, gnl|bosTau2|chr3 (83857221-83856708)
               

               
               1-514, gnl|canFam2|chr25 (51011718-51012478)
               

               
               1-514, gnl|danRer3|chr16 (20284698-20283977)
               

               
               1-514, gnl|dasNov1|scaffold_2040 (25842-26601)
               

               
               1-514, gnl|echTel1|scaffold_325286 (236-987)
               

               
               1-514, gnl|fr1|chrUn (228860707-228859950)
               

               
               1-514, gnl|galGal2|chr7 (4771512-4770773)
               

               
               1-514, gnl|hg17|chr2 (238031075-238031834)
               

               
               1-514, gnl|Hg17|chr2 (238031603-238031090)
               

               
               1-514, gnl|loxAfr1|scaffold_12620 (27603-26845)
               

               
               1-514, gnl|mm7|chr1 (90682748-90683507)
               

               
               1-514, gnl|Mm7|chr1 (90683276-90682763)
               

               
               1-514, gnl|monDom2|scaffold_161 (179670-178951)
               

               
               1-514, gnl|oryCun1|scaffold_123039 (9259-10011)
               

               
               1-514, gnl|panTro1|chr13 (128971145-128971904)
               

               
               1-514, gnl|rheMac2|chr12 (101196262-101197021)
               

               
               1-514, gnl|rn3|chr9 (90182396-90183152)
               

               
               1-514, gnl|tetNig1|chr2 (18607883-18607168)
               

               
               1-514, gnl|xenTro1|scaffold_49 (2383107-2383828)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-514, gnl|bosTau2|chr3 (83857221-83856708)
               

               
               1-514, gnl|canFam2|chr25 (51011718-51012478)
               

               
               1-514, gnl|danRer3|chr16 (20284698-20283977)
               

               
               1-514, gnl|dasNov1|scaffold_2040 (25842-26601)
               

               
               1-514, gnl|echTel1|scaffold_325286 (236-987)
               

               
               1-514, gnl|fr1|chrUn (228860707-228859950)
               

               
               1-514, gnl|galGal2|chr7 (4771512-4770773)
               

               
               1-514, gnl|hg17|chr2 (238031075-238031834)
               

               
               1-514, gnl|Hg17|chr2 (238031603-238031090)
               

               
               1-514, gnl|loxAfr1|scaffold_12620 (27603-26845)
               

               
               1-514, gnl|mm7|chr1 (90682748-90683507)
               

               
               1-514, gnl|Mm7|chr1 (90683276-90682763)
               

               
               1-514, gnl|monDom2|scaffold_161 (179670-178951)
               

               
               1-514, gnl|oryCun1|scaffold_123039 (9259-10011)
               

               
               1-514, gnl|panTro1|chr13 (128971145-128971904)
               

               
               1-514, gnl|rheMac2|chr12 (101196262-101197021)
               

               
               1-514, gnl|rn3|chr9 (90182396-90183152)
               

               
               1-514, gnl|tetNig1|chr2 (18607883-18607168)
               

               
               1-514, gnl|xenTro1|scaffold_49 (2383107-2383828)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               elu (0.385356)
               

               
               nep (0.36785)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               nep (0.36785)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	1-94, + strand, RNAz p=0.938136
	175-294, - strand, RNAz p=0.771447

	1-514, gnl\|bosTau2\|chr3 (83857221-83856708)
	1-514, gnl\|canFam2\|chr25 (51011718-51012478)
	1-514, gnl\|danRer3\|chr16 (20284698-20283977)
	1-514, gnl\|dasNov1\|scaffold_2040 (25842-26601)
	1-514, gnl\|echTel1\|scaffold_325286 (236-987)
	1-514, gnl\|fr1\|chrUn (228860707-228859950)
	1-514, gnl\|galGal2\|chr7 (4771512-4770773)
	1-514, gnl\|hg17\|chr2 (238031075-238031834)
	1-514, gnl\|Hg17\|chr2 (238031603-238031090)
	1-514, gnl\|loxAfr1\|scaffold_12620 (27603-26845)
	1-514, gnl\|mm7\|chr1 (90682748-90683507)
	1-514, gnl\|Mm7\|chr1 (90683276-90682763)
	1-514, gnl\|monDom2\|scaffold_161 (179670-178951)
	1-514, gnl\|oryCun1\|scaffold_123039 (9259-10011)
	1-514, gnl\|panTro1\|chr13 (128971145-128971904)
	1-514, gnl\|rheMac2\|chr12 (101196262-101197021)
	1-514, gnl\|rn3\|chr9 (90182396-90183152)
	1-514, gnl\|tetNig1\|chr2 (18607883-18607168)
	1-514, gnl\|xenTro1\|scaffold_49 (2383107-2383828)

	elu (0.385356)
	nep (0.36785)
	med (0.116252)
	jca (0.11396)
	cty (0.10408)
	jej (0.0989218)