Non-Coding RNA Search

Ss1.1-Spl1-SPL010014E02.5

Sequence:


               
               GCTGCCTTCTCATGACCTGCCTGCTGCTGATCTTCACCCACGCCTCCATCATGTCCTTGC
TAGCCATTGCCGTGGACCGATACCTGCGGGTCAAGCTCACGGTCAGATACAGGAGGGTCA
CCACTCAACGAAGAATATGGTTGGCTCTGGGCCTTTGCTGGCTGGTGTCATTCCTGGTGG
GCCTGACCCCCATGTTCGGCTGGAACGTGAAACTGACCTCAGAGTACCACCGGAACCTCA
CCTTCCTTTCCTGCCAGTTCCGTTCCGTCATGAGGATGGACTACATGGTCTACTTCAGCT
TCTTCACTTGGATTTTCATTCCCCTGGTTGTCATGTGCGCCATCTACCTTGACATCTTCT
ATGTCATCCGGCACAAACTCAATCATAACTTCTCTGGCTCCAAAGAGACAGGTGCATTTT
ATGGACGGGAGTTCAAGACAGCCAAGTCTCTGTTTCTGGTTCTTTTCTTATTTGCCTTGT
CCTGGCTGCCTTTATCTATCATCAACTGTATCATCTACTTTAAAGGTGAAGTGCCAGAAG
TTGTGCTGTACTTGGGCATCCTGCTGTCCCATGCTAACTCCATGATGAACCCTATCGTCT
ATGCTTATAAAATAAAGAAGTTCAAGGAAACCTACATTTTGATCCTCAAGGCCTGTGTGA
TTTGCCAGCCCTCTAATTCCTTGGACCCAAGCACTAAGAAGCCTTCTGAATAGTTCATGA
AAGAGGACCGTCCATCCCATTGACCTTGGGATTCGACAACAACAAACACTTGAGGGTCTG
TCCACCTGGGCCAACGGCTCACATGTCTTTGCTGCCTTCCACTCAGGTGGGAAGCGTTTG
GCTGGCTGCCTCCAATTGCACCTTCCCTACGATCTAATTCATTTTCTTTCTCGTCCTTCT
TTTCGATGTTCTGGATATCTGACTTGAGGACAGTGTTCTACTGCTACGGCTGCCTGTGCC
CCTCCCTCCCAAACAGAAGTGATGGAGTTTGAAGGATGCCTCCACTGACATCCTGACCAA
AGGCGCCCAATCAGGCTGGATACATACCCGATGCTGACCCAGTTCTACTCCACCGTGGAA
CTAGGAGGACAACCCTGCTCTTGGCAGATGCCTGCAAGATGGTGGGAATGCAAGGAATGA
ACTGAGTTTAAGGGGGACTTAAATTGCTGAACTCACTTGTCAGTGTATTTGAGTAAATAA
AAGAGGATAACTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGCCTTCTCATGACCTGCCTGCTGCTGATCTTCACCCACGCCTCCATCATGTCCTTGC
TAGCCATTGCCGTGGACCGATACCTGCGGGTCAAGCTCACGGTCAGATACAGGAGGGTCA
CCACTCAACGAAGAATATGGTTGGCTCTGGGCCTTTGCTGGCTGGTGTCATTCCTGGTGG
GCCTGACCCCCATGTTCGGCTGGAACGTGAAACTGACCTCAGAGTACCACCGGAACCTCA
CCTTCCTTTCCTGCCAGTTCCGTTCCGTCATGAGGATGGACTACATGGTCTACTTCAGCT
TCTTCACTTGGATTTTCATTCCCCTGGTTGTCATGTGCGCCATCTACCTTGACATCTTCT
ATGTCATCCGGCACAAACTCAATCATAACTTCTCTGGCTCCAAAGAGACAGGTGCATTTT
ATGGACGGGAGTTCAAGACAGCCAAGTCTCTGTTTCTGGTTCTTTTCTTATTTGCCTTGT
CCTGGCTGCCTTTATCTATCATCAACTGTATCATCTACTTTAAAGGTGAAGTGCCAGAAG
TTGTGCTGTACTTGGGCATCCTGCTGTCCCATGCTAACTCCATGATGAACCCTATCGTCT
ATGCTTATAAAATAAAGAAGTTCAAGGAAACCTACATTTTGATCCTCAAGGCCTGTGTGA
TTTGCCAGCCCTCTAATTCCTTGGACCCAAGCACTAAGAAGCCTTCTGAATAGTTCATGA
AAGAGGACCGTCCATCCCATTGACCTTGGGATTCGACAACAACAAACACTTGAGGGTCTG
TCCACCTGGGCCAACGGCTCACATGTCTTTGCTGCCTTCCACTCAGGTGGGAAGCGTTTG
GCTGGCTGCCTCCAATTGCACCTTCCCTACGATCTAATTCATTTTCTTTCTCGTCCTTCT
TTTCGATGTTCTGGATATCTGACTTGAGGACAGTGTTCTACTGCTACGGCTGCCTGTGCC
CCTCCCTCCCAAACAGAAGTGATGGAGTTTGAAGGATGCCTCCACTGACATCCTGACCAA
AGGCGCCCAATCAGGCTGGATACATACCCGATGCTGACCCAGTTCTACTCCACCGTGGAA
CTAGGAGGACAACCCTGCTCTTGGCAGATGCCTGCAAGATGGTGGGAATGCAAGGAATGA
ACTGAGTTTAAGGGGGACTTAAATTGCTGAACTCACTTGTCAGTGTATTTGAGTAAATAA
AAGAGGATAACTAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9BG15_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9BG15_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1037-1156, - strand, RNAz p=0.643463

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1037-1156, - strand, RNAz p=0.643463

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               104-1214, gnl|bosTau2|chr3 (27719076-27720181)
               

               
               104-1214, gnl|Hg17|chr1 (111755223-111754093)
               

               
               104-1214, gnl|Mm7|chr3 (105725574-105726643)
               


               
               252-644, gnl|bosTau2|chr16 (2330797-2331198)
               

               
               252-644, gnl|Hg17|chr1 (199866209-199866610)
               

               
               252-644, gnl|Mm7|chr1 (134093212-134092811)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               104-1214, gnl|bosTau2|chr3 (27719076-27720181)
               

               
               104-1214, gnl|Hg17|chr1 (111755223-111754093)
               

               
               104-1214, gnl|Mm7|chr3 (105725574-105726643)
               


               
               252-644, gnl|bosTau2|chr16 (2330797-2331198)
               

               
               252-644, gnl|Hg17|chr1 (199866209-199866610)
               

               
               252-644, gnl|Mm7|chr1 (134093212-134092811)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cly (0.361925)
               

               
               lnt (0.284616)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               bla (0.124347)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.361925)
               

               
               lnt (0.284616)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               bla (0.124347)

	104-1214, gnl\|bosTau2\|chr3 (27719076-27720181)
	104-1214, gnl\|Hg17\|chr1 (111755223-111754093)
	104-1214, gnl\|Mm7\|chr3 (105725574-105726643)

	252-644, gnl\|bosTau2\|chr16 (2330797-2331198)
	252-644, gnl\|Hg17\|chr1 (199866209-199866610)
	252-644, gnl\|Mm7\|chr1 (134093212-134092811)

	cly (0.361925)
	lnt (0.284616)
	spl (0.143184)
	hyp (0.142837)
	bla (0.124347)