Non-Coding RNA Search

Ss1.1-Spl1-SPL010015E04.5

Sequence:


               
               GAGCTCACAGCTGCAGTGCCAGAGCCAGATGTGCCCCTGGAAGTAAGGCTCCTGTCCATG
GAGAGGCCCCACACGGTCCTGCGGGTGAGCCTGCATCACCCCGTGCCGGACCCAACCACC
TTCACCCTCGTTCCCCCACGGCTACAGCACGACATCAGCCCGCTGCTGGTGGGCCGGGGC
CCGGAGGCCCACCTCCGGCTGCAGCTCCCGCACCTCTCCCGCCGGCACCTGTCGCTGGAG
CCCTACTTGGAGAAGGGTGGCTCTCTGCTGACCTTCAGCCTGAAGGCCCTGAGCCGCAAG
GGCTGCGTGTGGGTCAACGGGCTGACGCTGAGGTTCCTGGAGCAGGTGCCCCTGAGTGTC
GTCAACAGGGTGGCCTTCTCCGGCGTCCAGATGGTGGTCCACATCGAGGGAGGCACCTCC
CTGGAGACCTTTGTCTGCTTCTTCCATCTCAGCCCCTCGCCCCTGATTTACAGGCTCCAG
GCCGAGGAGACAGACGAATGGGAAGGCGTCCCCCAGGAGCAGCCTCCCCCGGGCCCAGGG
CCACAGGCCCCGGGTCCCCTGGGCTTTCTCCACGGTCCTTCCCAGCCAAGCCCTGGAGGA
GCAACAGAAATACAGCTCCAGAGGGAGCCCCGGGACAGGGAGCTTTGCTAGGCCCTCTGG
CCAGCCAGAGCCAGCCTCGGCTGGCACAGGACCTCATATACCAAGCTACATCATTCAAAG
CTGACAAGCAGGTTTGCGGAGCACTGATGAGCCAAATCTGAGAACAACGAATGGCCTGGG
GTCGGGGGAGCGCCCTCCGCAGCCACAGCTATGCAACGGAACAGGAACTTCATATATTTT
AGAGGCCCTAAGGGGTTCTGGGAGCCTCTCTCAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCTCACAGCTGCAGTGCCAGAGCCAGATGTGCCCCTGGAAGTAAGGCTCCTGTCCATG
GAGAGGCCCCACACGGTCCTGCGGGTGAGCCTGCATCACCCCGTGCCGGACCCAACCACC
TTCACCCTCGTTCCCCCACGGCTACAGCACGACATCAGCCCGCTGCTGGTGGGCCGGGGC
CCGGAGGCCCACCTCCGGCTGCAGCTCCCGCACCTCTCCCGCCGGCACCTGTCGCTGGAG
CCCTACTTGGAGAAGGGTGGCTCTCTGCTGACCTTCAGCCTGAAGGCCCTGAGCCGCAAG
GGCTGCGTGTGGGTCAACGGGCTGACGCTGAGGTTCCTGGAGCAGGTGCCCCTGAGTGTC
GTCAACAGGGTGGCCTTCTCCGGCGTCCAGATGGTGGTCCACATCGAGGGAGGCACCTCC
CTGGAGACCTTTGTCTGCTTCTTCCATCTCAGCCCCTCGCCCCTGATTTACAGGCTCCAG
GCCGAGGAGACAGACGAATGGGAAGGCGTCCCCCAGGAGCAGCCTCCCCCGGGCCCAGGG
CCACAGGCCCCGGGTCCCCTGGGCTTTCTCCACGGTCCTTCCCAGCCAAGCCCTGGAGGA
GCAACAGAAATACAGCTCCAGAGGGAGCCCCGGGACAGGGAGCTTTGCTAGGCCCTCTGG
CCAGCCAGAGCCAGCCTCGGCTGGCACAGGACCTCATATACCAAGCTACATCATTCAAAG
CTGACAAGCAGGTTTGCGGAGCACTGATGAGCCAAATCTGAGAACAACGAATGGCCTGGG
GTCGGGGGAGCGCCCTCCGCAGCCACAGCTATGCAACGGAACAGGAACTTCATATATTTT
AGAGGCCCTAAGGGGTTCTGGGAGCCTCTCTCAGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61835716|ref|XP_602849.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61835716|ref|XP_602849.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               245-364, - strand, RNAz p=0.577628
               

               
               485-618, - strand, RNAz p=0.8562

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               245-364, - strand, RNAz p=0.577628
               

               
               485-618, - strand, RNAz p=0.8562

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               46-876, gnl|bosTau2|chr7 (32969488-32970318)
               

               
               46-876, gnl|Hg17|chr5 (134813539-134812676)
               

               
               46-876, gnl|Mm7|chr13 (55265886-55265016)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-876, gnl|bosTau2|chr7 (32969488-32970318)
               

               
               46-876, gnl|Hg17|chr5 (134813539-134812676)
               

               
               46-876, gnl|Mm7|chr13 (55265886-55265016)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               csp (0.322373)
               

               
               nje (0.16592)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.322373)
               

               
               nje (0.16592)

	245-364, - strand, RNAz p=0.577628
	485-618, - strand, RNAz p=0.8562

	46-876, gnl\|bosTau2\|chr7 (32969488-32970318)
	46-876, gnl\|Hg17\|chr5 (134813539-134812676)
	46-876, gnl\|Mm7\|chr13 (55265886-55265016)