Ss1.1-Spl1-SPL010016B04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTACCAGAGGACCGCAGGAGGGCGCCCCCTGGTCCCGCCCCCTCCCCGGTCGCGCCGC GTGGCTGGAGAGTCGGCCCGCGCCGGAAGCCGCTCTCCCGGCCAGGGGAAGGTGGGGAAG GGTGCAGGTGCAGCCAGCATGGGCGAGCCCCAGAGGTCCACGCGGATCCTAGTGACTGGG GGCTCCGGGCTGGTGGGCAGAGCCATCCAGAAGGTGGTAGCAGATGGAGCCAGGCTGCCC GGAGAGGACTGGGTGTTTGTCTCCTCCAAGGATGCCGACCTCACGAATGCTGCACAGACC CGGGCACTGTTTGAAAAGGTCCAGCCCACACACGTCATCCATCTTGCTGCCATGGTGGGG GGCCTCTTCCGGAACATGAAATACAATTTGGACTTCTGGAGGAAAAACGTGCACATCAAC GACAACGTGCTGCACTCGGCCTTCGAGGTGGGCGCGCGCAAGGTGGTCTCCTGTCTATCT ACCTGCATCTTCCCGGACAAGACCACCTACCCTATCGACGAGACCATGATTCACGATGGG CCGCCGCACAGCAGCAATTTTGGCTACTCTTATGCCAAGAGGATGATCGACGTGCAAAAC AGGGCCTACTTCCAGCAGCACGGCTGCACCTTCACCGCCGTCATCCCCACCAATGTTTTC GGGCCGCATGACAACTTCAACATCGAGGACGGCCACGTGCTGCCCGGCCTCATCCACAAG GTGCACCTGGCCAAGAGCCGCGGCTCGGCCCTGACGGTGTGGGGCACGGGGAGACCCCGG AGGCAGTTCATCTACTCACTGGACCTGGCTCGGCTCTTCCTCTGGGTCCTGCGGGAATAC GACCAGGTGGAGCCCATCATCCTGTCAGTGGGCGAGGAGGACGAGGTGTCCATCCGGGAG GCGGCCGAGGCCGTGGTGGAGGCCATGGACTTCCACGGGGAGGTCATCTTTGATACCACC AAGTCAGATGGGCAGTTTAAGAAGACGGCCAGCAACAGCAAGCTGCGGGCCTACCTGCCT GACTTCCGGTTCACACCCTTCAAGCAGGCCGTGAAGGAGACCTGTGCCTGGTTCACTGAC AACTACGAGGAGGCCCGGAAGTGAAGCACAGCTGCGGCCGCGGGGCCAGGGGCCTCCTTT TCCTGGTGCCCTGGCGGCTGCTCAGCCAGTGGAACCCAGCGGCCACCACCCTCAGAGCCT GCCCGGAGTTGGGAGCACTGCCCCCCCGGTGGTGGGCCCGTGCTTCACCCCCTACCAGGG TAGCTCTGGGTCACTGTCCAGAGGGGCCATGTCCGTCCTCAGGGAAAGAAAGGCCCGGCC AGGCCGGCACCTTGCTCCCCAGCACCGGTCCCCGAGTGTGTCCATTCCTGAGTCCCTGGG AGCCAATAAAGTGCGTTTGTTTCCACAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTACCAGAGGACCGCAGGAGGGCGCCCCCTGGTCCCGCCCCCTCCCCGGTCGCGCCGC GTGGCTGGAGAGTCGGCCCGCGCCGGAAGCCGCTCTCCCGGCCAGGGGAAGGTGGGGAAG GGTGCAGGTGCAGCCAGCATGGGCGAGCCCCAGAGGTCCACGCGGATCCTAGTGACTGGG GGCTCCGGGCTGGTGGGCAGAGCCATCCAGAAGGTGGTAGCAGATGGAGCCAGGCTGCCC GGAGAGGACTGGGTGTTTGTCTCCTCCAAGGATGCCGACCTCACGAATGCTGCACAGACC CGGGCACTGTTTGAAAAGGTCCAGCCCACACACGTCATCCATCTTGCTGCCATGGTGGGG GGCCTCTTCCGGAACATGAAATACAATTTGGACTTCTGGAGGAAAAACGTGCACATCAAC GACAACGTGCTGCACTCGGCCTTCGAGGTGGGCGCGCGCAAGGTGGTCTCCTGTCTATCT ACCTGCATCTTCCCGGACAAGACCACCTACCCTATCGACGAGACCATGATTCACGATGGG CCGCCGCACAGCAGCAATTTTGGCTACTCTTATGCCAAGAGGATGATCGACGTGCAAAAC AGGGCCTACTTCCAGCAGCACGGCTGCACCTTCACCGCCGTCATCCCCACCAATGTTTTC GGGCCGCATGACAACTTCAACATCGAGGACGGCCACGTGCTGCCCGGCCTCATCCACAAG GTGCACCTGGCCAAGAGCCGCGGCTCGGCCCTGACGGTGTGGGGCACGGGGAGACCCCGG AGGCAGTTCATCTACTCACTGGACCTGGCTCGGCTCTTCCTCTGGGTCCTGCGGGAATAC GACCAGGTGGAGCCCATCATCCTGTCAGTGGGCGAGGAGGACGAGGTGTCCATCCGGGAG GCGGCCGAGGCCGTGGTGGAGGCCATGGACTTCCACGGGGAGGTCATCTTTGATACCACC AAGTCAGATGGGCAGTTTAAGAAGACGGCCAGCAACAGCAAGCTGCGGGCCTACCTGCCT GACTTCCGGTTCACACCCTTCAAGCAGGCCGTGAAGGAGACCTGTGCCTGGTTCACTGAC AACTACGAGGAGGCCCGGAAGTGAAGCACAGCTGCGGCCGCGGGGCCAGGGGCCTCCTTT TCCTGGTGCCCTGGCGGCTGCTCAGCCAGTGGAACCCAGCGGCCACCACCCTCAGAGCCT GCCCGGAGTTGGGAGCACTGCCCCCCCGGTGGTGGGCCCGTGCTTCACCCCCTACCAGGG TAGCTCTGGGTCACTGTCCAGAGGGGCCATGTCCGTCCTCAGGGAAAGAAAGGCCCGGCC AGGCCGGCACCTTGCTCCCCAGCACCGGTCCCCGAGTGTGTCCATTCCTGAGTCCCTGGG AGCCAATAAAGTGCGTTTGTTTCCACAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 125-285, gnl|bosTau2|chr14 (657918-657758) | |
| 125-285, gnl|canFam2|chr13 (40301454-40301586) | |
| 125-285, gnl|danRer3|chrUn (103156326-103156202) | |
| 125-285, gnl|echTel1|scaffold_184265 (7714-7583) | |
| 125-285, gnl|fr1|chrUn (157578985-157578863) | |
| 125-285, gnl|galGal2|chr2 (135096933-135096800) | |
| 125-285, gnl|hg17|chr8 (144769862-144769994) | |
| 125-285, gnl|Hg17|chr8 (144770039-144769879) | |
| 125-285, gnl|loxAfr1|scaffold_125761 (5315-5183) | |
| 125-285, gnl|mm7|chr15 (76011421-76011554) | |
| 125-285, gnl|Mm7|chr15 (76011600-76011439) | |
| 125-285, gnl|monDom2|scaffold_149 (872882-873090) | |
| 125-285, gnl|oryCun1|scaffold_111113 (626-757) | |
| 125-285, gnl|panTro1|chr7 (148037471-148037603) | |
| 125-285, gnl|rheMac2|chr8 (146248216-146248348) | |
| 125-285, gnl|rn3|chr7 (113967693-113967826) | |
| 125-285, gnl|xenTro1|scaffold_6336 (1600-1465) | |
| 399-528, gnl|bosTau2|chr14 (656260-656131) | |
| 399-528, gnl|canFam2|chr13 (40299743-40299907) | |
| 399-528, gnl|danRer3|chrUn (103160387-103160252) | |
| 399-528, gnl|dasNov1|scaffold_230895 (2790-2951) | |
| 399-528, gnl|echTel1|scaffold_184265 (8677-8506) | |
| 399-528, gnl|fr1|chrUn (46725251-46725411) | |
| 399-528, gnl|galGal2|chr2 (135097921-135097757) | |
| 399-528, gnl|hg17|chr8 (144768084-144768244) | |
| 399-528, gnl|Hg17|chr8 (144768229-144768100) | |
| 399-528, gnl|loxAfr1|scaffold_64239 (12461-12622) | |
| 399-528, gnl|mm7|chr15 (76009500-76009660) | |
| 399-528, gnl|Mm7|chr15 (76009644-76009515) | |
| 399-528, gnl|monDom2|scaffold_79 (4768120-4767956) | |
| 399-528, gnl|panTro1|chr7 (148035692-148035852) | |
| 399-528, gnl|rheMac2|chr8 (146246439-146246599) | |
| 399-528, gnl|rn3|chr7 (113965761-113965921) | |
| 399-528, gnl|tetNig1|chrUn_random (45310372-45310515) | |
| 399-528, gnl|xenTro1|scaffold_6336 (2623-2472) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 125-285, gnl|bosTau2|chr14 (657918-657758) | |
| 125-285, gnl|canFam2|chr13 (40301454-40301586) | |
| 125-285, gnl|danRer3|chrUn (103156326-103156202) | |
| 125-285, gnl|echTel1|scaffold_184265 (7714-7583) | |
| 125-285, gnl|fr1|chrUn (157578985-157578863) | |
| 125-285, gnl|galGal2|chr2 (135096933-135096800) | |
| 125-285, gnl|hg17|chr8 (144769862-144769994) | |
| 125-285, gnl|Hg17|chr8 (144770039-144769879) | |
| 125-285, gnl|loxAfr1|scaffold_125761 (5315-5183) | |
| 125-285, gnl|mm7|chr15 (76011421-76011554) | |
| 125-285, gnl|Mm7|chr15 (76011600-76011439) | |
| 125-285, gnl|monDom2|scaffold_149 (872882-873090) | |
| 125-285, gnl|oryCun1|scaffold_111113 (626-757) | |
| 125-285, gnl|panTro1|chr7 (148037471-148037603) | |
| 125-285, gnl|rheMac2|chr8 (146248216-146248348) | |
| 125-285, gnl|rn3|chr7 (113967693-113967826) | |
| 125-285, gnl|xenTro1|scaffold_6336 (1600-1465) | |
| 399-528, gnl|bosTau2|chr14 (656260-656131) | |
| 399-528, gnl|canFam2|chr13 (40299743-40299907) | |
| 399-528, gnl|danRer3|chrUn (103160387-103160252) | |
| 399-528, gnl|dasNov1|scaffold_230895 (2790-2951) | |
| 399-528, gnl|echTel1|scaffold_184265 (8677-8506) | |
| 399-528, gnl|fr1|chrUn (46725251-46725411) | |
| 399-528, gnl|galGal2|chr2 (135097921-135097757) | |
| 399-528, gnl|hg17|chr8 (144768084-144768244) | |
| 399-528, gnl|Hg17|chr8 (144768229-144768100) | |
| 399-528, gnl|loxAfr1|scaffold_64239 (12461-12622) | |
| 399-528, gnl|mm7|chr15 (76009500-76009660) | |
| 399-528, gnl|Mm7|chr15 (76009644-76009515) | |
| 399-528, gnl|monDom2|scaffold_79 (4768120-4767956) | |
| 399-528, gnl|panTro1|chr7 (148035692-148035852) | |
| 399-528, gnl|rheMac2|chr8 (146246439-146246599) | |
| 399-528, gnl|rn3|chr7 (113965761-113965921) | |
| 399-528, gnl|tetNig1|chrUn_random (45310372-45310515) | |
| 399-528, gnl|xenTro1|scaffold_6336 (2623-2472) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| nco (0.485201) | |
| pty (0.285429) | |
| nmm (0.265604) | |
| cov (0.264306) | |
| nms (0.213858) | |
| fty (0.17584) | |
| ill (0.175593) | |
| pla (0.133672) | |
| eru (0.120048) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| eje (0.0988338) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.485201) | |
| pty (0.285429) | |
| nmm (0.265604) | |
| cov (0.264306) | |
| nms (0.213858) | |
| fty (0.17584) | |
| ill (0.175593) | |
| pla (0.133672) | |
| eru (0.120048) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| eje (0.0988338) |