Ss1.1-Spl1-SPL010016D02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCGAGGCGGTGGCGCGCGGGAGCTCCGGGTCCTGGCCTCGGGTGCTACAATGGCGCTGT GCGAGGCGGTGGCGCGCGGGAGCTCCGGGTCCTGGCCTCGGGTGCTACTCTTCGGAGACT CCATCACCCAGTTTTCTTTCCAGCAAGGTGGATGGGGAGCGTCCCTGGCTGACAGGCTGG TCAGAAAATGCGATGTTTTGAACCGTGGGTTTTCAGGTTACAATACCAGATGGGCCAACA TTATCCTTCCAAGACTCCTCAGGAACGGGGACGGTTCGGACAGCCCCGTCGCAGTCACGG TCTTCTTTGGTGCCAATGACAGTGCGCTAAAAGACGAGAATCCCAAGCAGCACGTCCCGC TGGCGGAGTTCGCGGCCAACCTGAAGAGCATGGTGCAGCAGCTGCGGGCCGCGGGCGTGC CAGCCGCCGGCCTGGTCCTCATCACGCCGCCCCCGCTCTGCGAGGCGGCCTGGGAGCAGG AGTGCCTCCGGCAAGGTTCCAAGTTAAACCGCCTGAACGCGGTAGTTGGTGAATATGCCA GAGCCTGTGTACAAGTAGCCCAAGACTGTGGGACTGATGCCCTTGACCTGTGGACCCTGA TGCAGAAGGACAATCAGGACTTCTCTTCCTATTTGTCAGATGGACTGCATCTGTCACCAA AAGGAAACGAGTTTGTGTTCTCCCATCTTTGGCCTCTGATAGAGAAGAAAGTCTCTTCCC TGCCTCTGCGGTTCCCTTACTGGCGAGACGTAGCAGAAGCCACGCCCGAGCGAAGTCTCC TGGGGGGAGGAGACCAGTAGGCCCAGACCACCAGTTCCCACGGTGGCTCCACAGAACAGC CGTCACCGGTGCAGAGAGACCCTGGGATAAGCCGTCAGAGCGCACGGTCTTCCTCAGGTT TACACTTTGCTCCTGACTCGGGAGCAAACGTCATTAGCACCTGCCACCAAGACTAATAAA AGCATTCGCACTTTTCAGGAAAGCGTTGTAGCTGGGGCGCTGTGTTTTGATAATCGATGT GTATTGATGGATGCAGGTGTTATCAGTGCCACAGCTACAGCACACACCCTGAGCAGCTTG TTACTTCTATAAATGGAAAACCAGTAGACCATTTCTTTAAAAAGTCGCAATTTTATATTA AAAAAGTCGTTTTTCTTAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCGAGGCGGTGGCGCGCGGGAGCTCCGGGTCCTGGCCTCGGGTGCTACAATGGCGCTGT GCGAGGCGGTGGCGCGCGGGAGCTCCGGGTCCTGGCCTCGGGTGCTACTCTTCGGAGACT CCATCACCCAGTTTTCTTTCCAGCAAGGTGGATGGGGAGCGTCCCTGGCTGACAGGCTGG TCAGAAAATGCGATGTTTTGAACCGTGGGTTTTCAGGTTACAATACCAGATGGGCCAACA TTATCCTTCCAAGACTCCTCAGGAACGGGGACGGTTCGGACAGCCCCGTCGCAGTCACGG TCTTCTTTGGTGCCAATGACAGTGCGCTAAAAGACGAGAATCCCAAGCAGCACGTCCCGC TGGCGGAGTTCGCGGCCAACCTGAAGAGCATGGTGCAGCAGCTGCGGGCCGCGGGCGTGC CAGCCGCCGGCCTGGTCCTCATCACGCCGCCCCCGCTCTGCGAGGCGGCCTGGGAGCAGG AGTGCCTCCGGCAAGGTTCCAAGTTAAACCGCCTGAACGCGGTAGTTGGTGAATATGCCA GAGCCTGTGTACAAGTAGCCCAAGACTGTGGGACTGATGCCCTTGACCTGTGGACCCTGA TGCAGAAGGACAATCAGGACTTCTCTTCCTATTTGTCAGATGGACTGCATCTGTCACCAA AAGGAAACGAGTTTGTGTTCTCCCATCTTTGGCCTCTGATAGAGAAGAAAGTCTCTTCCC TGCCTCTGCGGTTCCCTTACTGGCGAGACGTAGCAGAAGCCACGCCCGAGCGAAGTCTCC TGGGGGGAGGAGACCAGTAGGCCCAGACCACCAGTTCCCACGGTGGCTCCACAGAACAGC CGTCACCGGTGCAGAGAGACCCTGGGATAAGCCGTCAGAGCGCACGGTCTTCCTCAGGTT TACACTTTGCTCCTGACTCGGGAGCAAACGTCATTAGCACCTGCCACCAAGACTAATAAA AGCATTCGCACTTTTCAGGAAAGCGTTGTAGCTGGGGCGCTGTGTTTTGATAATCGATGT GTATTGATGGATGCAGGTGTTATCAGTGCCACAGCTACAGCACACACCCTGAGCAGCTTG TTACTTCTATAAATGGAAAACCAGTAGACCATTTCTTTAAAAAGTCGCAATTTTATATTA AAAAAGTCGTTTTTCTTAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 329-497, gnl|bosTau2|chr11 (68442617-68442449) | |
| 329-497, gnl|canFam2|chr17 (9559989-9560176) | |
| 329-497, gnl|danRer3|chr17 (24615269-24615462) | |
| 329-497, gnl|dasNov1|scaffold_78658 (2079-2284) | |
| 329-497, gnl|echTel1|scaffold_286478 (153285-153497) | |
| 329-497, gnl|fr1|chrUn (134366510-134366305) | |
| 329-497, gnl|galGal2|chr3 (94472545-94472758) | |
| 329-497, gnl|hg17|chr2 (9571993-9572206) | |
| 329-497, gnl|Hg17|chr2 (9572008-9572176) | |
| 329-497, gnl|loxAfr1|scaffold_3572 (39125-38915) | |
| 329-497, gnl|mm7|chr12 (19679160-19679366) | |
| 329-497, gnl|Mm7|chr12 (19679170-19679338) | |
| 329-497, gnl|monDom2|scaffold_1 (127231884-127232071) | |
| 329-497, gnl|oryCun1|scaffold_73149 (442-243) | |
| 329-497, gnl|panTro1|chr12 (10218557-10218770) | |
| 329-497, gnl|rheMac2|chr13 (9575599-9575812) | |
| 329-497, gnl|rn3|chr6 (41881067-41881274) | |
| 329-497, gnl|tetNig1|chr10 (5905253-5905085) | |
| 329-497, gnl|xenTro1|scaffold_86 (39538-39335) | |
| 615-1142, gnl|bosTau2|chr11 (68440825-68440294) | |
| 615-1142, gnl|Hg17|chr2 (9578871-9579338) | |
| 615-1142, gnl|Mm7|chr12 (19682691-19683242) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 329-497, gnl|bosTau2|chr11 (68442617-68442449) | |
| 329-497, gnl|canFam2|chr17 (9559989-9560176) | |
| 329-497, gnl|danRer3|chr17 (24615269-24615462) | |
| 329-497, gnl|dasNov1|scaffold_78658 (2079-2284) | |
| 329-497, gnl|echTel1|scaffold_286478 (153285-153497) | |
| 329-497, gnl|fr1|chrUn (134366510-134366305) | |
| 329-497, gnl|galGal2|chr3 (94472545-94472758) | |
| 329-497, gnl|hg17|chr2 (9571993-9572206) | |
| 329-497, gnl|Hg17|chr2 (9572008-9572176) | |
| 329-497, gnl|loxAfr1|scaffold_3572 (39125-38915) | |
| 329-497, gnl|mm7|chr12 (19679160-19679366) | |
| 329-497, gnl|Mm7|chr12 (19679170-19679338) | |
| 329-497, gnl|monDom2|scaffold_1 (127231884-127232071) | |
| 329-497, gnl|oryCun1|scaffold_73149 (442-243) | |
| 329-497, gnl|panTro1|chr12 (10218557-10218770) | |
| 329-497, gnl|rheMac2|chr13 (9575599-9575812) | |
| 329-497, gnl|rn3|chr6 (41881067-41881274) | |
| 329-497, gnl|tetNig1|chr10 (5905253-5905085) | |
| 329-497, gnl|xenTro1|scaffold_86 (39538-39335) | |
| 615-1142, gnl|bosTau2|chr11 (68440825-68440294) | |
| 615-1142, gnl|Hg17|chr2 (9578871-9579338) | |
| 615-1142, gnl|Mm7|chr12 (19682691-19683242) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| cov (0.396458) | |
| cbr (0.383926) | |
| ecc (0.345105) | |
| eye (0.341006) | |
| pty (0.285429) | |
| pla (0.267344) | |
| jca (0.22792) | |
| spc (0.226732) | |
| nms (0.213858) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| cag (0.151194) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.396458) | |
| cbr (0.383926) | |
| ecc (0.345105) | |
| eye (0.341006) | |
| pty (0.285429) | |
| pla (0.267344) | |
| jca (0.22792) | |
| spc (0.226732) | |
| nms (0.213858) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| cag (0.151194) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| nbm (0.0993246) | |
| jej (0.0989218) |