Non-Coding RNA Search

Ss1.1-Spl1-SPL010016E04.5

Sequence:


               
               GGGCTGCTGGGAAGATGGCGGACTCGGTGGCCCGCCGATGAGGAGGCCGCGGGGGGAGCC
CGGCTCTCGGGCCCCGAGACCGACTGAGGGAGCGATCTGCGCGGGGCCCGGGGAGTCATG
GTCTCCATCACCCAACTCCATGCTTCGAGTCCTGCTCTCTGCCCAGGCCTCCAGCGCTCG
GCTCTCTGGCCTGCTGCTGCTCCCGCCAGTACAGCCCTACTGTCTGGGGCCCAGCAAGTG
GGGGGACCGGCCTCCTGGAGGAGGCTCCCATGTAGGCCCTGTGCAGGGGCTGCAGCGGCT
TCTGGAACAGGCAAGGAGCCCTGGGGAGCTGCTGCGCTGGCTGGGCCAGAACCCCACCAA
GGTCCACGCCCACCACTACCTTGTGGCACTTCGTCGCCTGGGTCAGCTCTTGGGGTCCCA
GCCACGGCCCCCTCCCGTGGAGCAGGCCACACTACAGGACTTGAGTCAGCTCATCATCCG
AAACTGCCCCTCCTTTGACATTCACACCATCCACGTGTGTCTGCACCTCGCAGTCTTACT
TGGCTTCCCATCAGATGGGCCCCTGGTGCGTGCCCTGGAACAGGAGCGCAGGTGCCGCCT
CCATTCGAAGCCGCCTCCCTCTCCGCAACCTGTCCTTCATGGTGGGCAAAGGTTGGAAGC
TGCTTTGAGCTGCCCCCGTTTCCTGCGGCATCCACAGCAGCACCTCATCCGCAGCCTGGC
AGAGGCCAGGCCAGAGGAACTGACTCCCCAAGTGATGGTGCTCCTGGCCCAGCACCTGGC
CCGCCACCGGTTGCGGGAACCCCAGCTTCTGGAAGCTATTGCTCACTTTTTGGTGGTCCA
GGAAGCCCAGCTCAACAGCAAGGTGGTCCAGAAGTTGGTCCTGCCCTTTGGGCGGCTGAA
CTACCTGCCTCTGGAAGAGCAGTTTATGCCCTGCCTCGAGAGGATCCTGGCTCGGGAAGC
AGGGGTGGCCCCCCTGGCAACTGTCAACATCTTGATGTCACTGTGCCAGCTGCGGTGCCT
GCCCTTCCGAGCCCTGCGCTTTGTCTTTTCCCCAGGTTTCATCAATCACATCAGTGGCAC
CCCTCACGCCCTGATCATGCGGCGCTACCTCTCCCTGCTGGACACAGCCGTGGAGCTGGA
GCTCCCGGGATACCGGGGTCCCCGCCTTCCCCGAAGGCAGCAAGTGCCCATCTTCCCCCA
GCCACTCATCACCGACCGCGCCCGCTGCAAGTACAGCCACAAGGATATAGTAGCAGAGGG
GCTGCGCCAGCTGCTGGGGGAGGAGAAGTACCGGCAGGACCTGACCGTGCCTCCAGGCTA
CTGCACAGACTTCCTGCTGTGTGTCAGCAGCTCTGGTGCTGTGCTTCCTGTGAGAACCCA
GGACCCCTTCCTGCCATATCCTCCCAGGTCCTGTCCCCACGCAACCCAAGACCCTGCCCA
AAGGGTGGTGCTGACGCTGCGGGAACGCTGGCATTTTTGCCGGGATGGCAGAGTGCTGCT
GGGCTCCCGGGCCCTGCGGGAGCGGCACCTGGGCCTGATGGGCTACCAGCTCCTGCCGCT
CCCCTTCGAGGAACTGGAGTCCCAGAGAGGCCTGCCCCAACTCAAGAGCTACCTGAGGCA
GAAGCTCCAGGCCCTGGGCCTCCGCTGGGGGCCGGAAGGGGGGTGAGGGGGTGCACACGG
GGTCCACGATGGCCCCCCCATGGGGGGCGGACAATTTGCACTTTGACTCTCTGTTTTGAT
TTGTCATTAAAGCCCCCTTCTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCTGCTGGGAAGATGGCGGACTCGGTGGCCCGCCGATGAGGAGGCCGCGGGGGGAGCC
CGGCTCTCGGGCCCCGAGACCGACTGAGGGAGCGATCTGCGCGGGGCCCGGGGAGTCATG
GTCTCCATCACCCAACTCCATGCTTCGAGTCCTGCTCTCTGCCCAGGCCTCCAGCGCTCG
GCTCTCTGGCCTGCTGCTGCTCCCGCCAGTACAGCCCTACTGTCTGGGGCCCAGCAAGTG
GGGGGACCGGCCTCCTGGAGGAGGCTCCCATGTAGGCCCTGTGCAGGGGCTGCAGCGGCT
TCTGGAACAGGCAAGGAGCCCTGGGGAGCTGCTGCGCTGGCTGGGCCAGAACCCCACCAA
GGTCCACGCCCACCACTACCTTGTGGCACTTCGTCGCCTGGGTCAGCTCTTGGGGTCCCA
GCCACGGCCCCCTCCCGTGGAGCAGGCCACACTACAGGACTTGAGTCAGCTCATCATCCG
AAACTGCCCCTCCTTTGACATTCACACCATCCACGTGTGTCTGCACCTCGCAGTCTTACT
TGGCTTCCCATCAGATGGGCCCCTGGTGCGTGCCCTGGAACAGGAGCGCAGGTGCCGCCT
CCATTCGAAGCCGCCTCCCTCTCCGCAACCTGTCCTTCATGGTGGGCAAAGGTTGGAAGC
TGCTTTGAGCTGCCCCCGTTTCCTGCGGCATCCACAGCAGCACCTCATCCGCAGCCTGGC
AGAGGCCAGGCCAGAGGAACTGACTCCCCAAGTGATGGTGCTCCTGGCCCAGCACCTGGC
CCGCCACCGGTTGCGGGAACCCCAGCTTCTGGAAGCTATTGCTCACTTTTTGGTGGTCCA
GGAAGCCCAGCTCAACAGCAAGGTGGTCCAGAAGTTGGTCCTGCCCTTTGGGCGGCTGAA
CTACCTGCCTCTGGAAGAGCAGTTTATGCCCTGCCTCGAGAGGATCCTGGCTCGGGAAGC
AGGGGTGGCCCCCCTGGCAACTGTCAACATCTTGATGTCACTGTGCCAGCTGCGGTGCCT
GCCCTTCCGAGCCCTGCGCTTTGTCTTTTCCCCAGGTTTCATCAATCACATCAGTGGCAC
CCCTCACGCCCTGATCATGCGGCGCTACCTCTCCCTGCTGGACACAGCCGTGGAGCTGGA
GCTCCCGGGATACCGGGGTCCCCGCCTTCCCCGAAGGCAGCAAGTGCCCATCTTCCCCCA
GCCACTCATCACCGACCGCGCCCGCTGCAAGTACAGCCACAAGGATATAGTAGCAGAGGG
GCTGCGCCAGCTGCTGGGGGAGGAGAAGTACCGGCAGGACCTGACCGTGCCTCCAGGCTA
CTGCACAGACTTCCTGCTGTGTGTCAGCAGCTCTGGTGCTGTGCTTCCTGTGAGAACCCA
GGACCCCTTCCTGCCATATCCTCCCAGGTCCTGTCCCCACGCAACCCAAGACCCTGCCCA
AAGGGTGGTGCTGACGCTGCGGGAACGCTGGCATTTTTGCCGGGATGGCAGAGTGCTGCT
GGGCTCCCGGGCCCTGCGGGAGCGGCACCTGGGCCTGATGGGCTACCAGCTCCTGCCGCT
CCCCTTCGAGGAACTGGAGTCCCAGAGAGGCCTGCCCCAACTCAAGAGCTACCTGAGGCA
GAAGCTCCAGGCCCTGGGCCTCCGCTGGGGGCCGGAAGGGGGGTGAGGGGGTGCACACGG
GGTCCACGATGGCCCCCCCATGGGGGGCGGACAATTTGCACTTTGACTCTCTGTTTTGAT
TTGTCATTAAAGCCCCCTTCTTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51105915|gb|EAL24499.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51105915|gb|EAL24499.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               116-351, + strand, RNAz p=0.987174
               

               
               900-1707, + strand, RNAz p=0.94572
               

               
               1324-1421, - strand, RNAz p=0.622278

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               116-351, + strand, RNAz p=0.987174
               

               
               900-1707, + strand, RNAz p=0.94572
               

               
               1324-1421, - strand, RNAz p=0.622278

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK023141, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK023141, +

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               116-543, gnl|bosTau2|chr4 (64516207-64516637)
               

               
               116-543, gnl|Hg17|chr7 (150214661-150214234)
               

               
               116-543, gnl|Mm7|chr5 (23484802-23484387)
               


               
               861-1077, gnl|bosTau2|chr4 (64518262-64518478)
               

               
               861-1077, gnl|Hg17|chr7 (150212829-150212613)
               

               
               861-1077, gnl|Mm7|chr5 (23482890-23482674)
               


               
               1324-1444, gnl|bosTau2|chr4 (64519139-64519259)
               

               
               1324-1444, gnl|Hg17|chr7 (150211974-150211835)
               

               
               1324-1444, gnl|Mm7|chr5 (23482161-23482020)
               


               
               1552-1764, gnl|bosTau2|chr4 (64519538-64519750)
               

               
               1552-1764, gnl|Hg17|chr7 (150211574-150211360)
               

               
               1552-1764, gnl|Mm7|chr5 (23481761-23481535)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               116-543, gnl|bosTau2|chr4 (64516207-64516637)
               

               
               116-543, gnl|Hg17|chr7 (150214661-150214234)
               

               
               116-543, gnl|Mm7|chr5 (23484802-23484387)
               


               
               861-1077, gnl|bosTau2|chr4 (64518262-64518478)
               

               
               861-1077, gnl|Hg17|chr7 (150212829-150212613)
               

               
               861-1077, gnl|Mm7|chr5 (23482890-23482674)
               


               
               1324-1444, gnl|bosTau2|chr4 (64519139-64519259)
               

               
               1324-1444, gnl|Hg17|chr7 (150211974-150211835)
               

               
               1324-1444, gnl|Mm7|chr5 (23482161-23482020)
               


               
               1552-1764, gnl|bosTau2|chr4 (64519538-64519750)
               

               
               1552-1764, gnl|Hg17|chr7 (150211574-150211360)
               

               
               1552-1764, gnl|Mm7|chr5 (23481761-23481535)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               nco (0.323468)
               

               
               ebs (0.236602)
               

               
               duo (0.172801)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.323468)
               

               
               ebs (0.236602)
               

               
               duo (0.172801)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	116-351, + strand, RNAz p=0.987174
	900-1707, + strand, RNAz p=0.94572
	1324-1421, - strand, RNAz p=0.622278

	116-543, gnl\|bosTau2\|chr4 (64516207-64516637)
	116-543, gnl\|Hg17\|chr7 (150214661-150214234)
	116-543, gnl\|Mm7\|chr5 (23484802-23484387)

	861-1077, gnl\|bosTau2\|chr4 (64518262-64518478)
	861-1077, gnl\|Hg17\|chr7 (150212829-150212613)
	861-1077, gnl\|Mm7\|chr5 (23482890-23482674)

	1324-1444, gnl\|bosTau2\|chr4 (64519139-64519259)
	1324-1444, gnl\|Hg17\|chr7 (150211974-150211835)
	1324-1444, gnl\|Mm7\|chr5 (23482161-23482020)

	1552-1764, gnl\|bosTau2\|chr4 (64519538-64519750)
	1552-1764, gnl\|Hg17\|chr7 (150211574-150211360)
	1552-1764, gnl\|Mm7\|chr5 (23481761-23481535)

	nco (0.323468)
	ebs (0.236602)
	duo (0.172801)
	pla (0.133672)
	eep (0.122564)
	eru (0.120048)
	jca (0.11396)
	jej (0.0989218)