Non-Coding RNA Search

Ss1.1-Spl1-SPL010016F04.5

Sequence:


               
               CAAGGAATGTGACTTCCAGACTAAGTTTGCACTCAGCCTCTCTCCAGGTGCCCATCAGAA
GCGACTGATCCCTGTTAAGTACAAGTCAATGAAGAAAGAGTTCCCCAGCATCCTGCGGTT
CATCACTGTCTGTGACTACACCAACCCCTGCACCAAGTCCTGGTTCTGGACTCGCCTTGC
CAGGGCCCTATCCCTGCCCTGAACTGCCCTGGGTCCCTGGGTGTGCATCCATCTGTCTGC
CTGTACATGTACTTCTGCAGCTGTAGGGGGAATGTGTGTGCTCCACTGGCCTCTTGATTC
CTGGACATGGCAACTCCACAGACCAGCTGAAGCCACTGTACATATCTGGACATCACATCT
CATGTCCTAAACAGAACAGGCAGCAGCAAGTGGCACGCCCGCTTGCTGGGTTATAAGCCA
GGACAGTGGAAACCAGAGCCAGCTGGGACTAAGAGGTGGACCAGAAGAGCCAGCTCTTAC
CCATCCACACATCTTAGACCTCAGTTTCTCGGTAGAGAACTATGTGGCTGTGTTCGAAGC
ACTGTGGGAAATAGGGAATCATTGTTCTGAGTCTCCTGGGGGAGACAAATCTTGGCTGAG
AGAGAGCTGGCGGCCTGAGCACATGCTGACCACTGCTGGAACCATGGCACTGCTGGGACA
GCTGCTTCCACAAGGGTGCCTGCTGATGCTTTGAGGTCTCATTGCCCCACCTCACATCCC
ACTTCCTCTTGCCCCAGGGACAGATGGGGAACCAGGCTGGCTCAGCACAAGGAGATCTTG
CATTAAGCCTGATTCCCCAGTGGGTCCACCTCTCATCTGCCTCTTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGGAATGTGACTTCCAGACTAAGTTTGCACTCAGCCTCTCTCCAGGTGCCCATCAGAA
GCGACTGATCCCTGTTAAGTACAAGTCAATGAAGAAAGAGTTCCCCAGCATCCTGCGGTT
CATCACTGTCTGTGACTACACCAACCCCTGCACCAAGTCCTGGTTCTGGACTCGCCTTGC
CAGGGCCCTATCCCTGCCCTGAACTGCCCTGGGTCCCTGGGTGTGCATCCATCTGTCTGC
CTGTACATGTACTTCTGCAGCTGTAGGGGGAATGTGTGTGCTCCACTGGCCTCTTGATTC
CTGGACATGGCAACTCCACAGACCAGCTGAAGCCACTGTACATATCTGGACATCACATCT
CATGTCCTAAACAGAACAGGCAGCAGCAAGTGGCACGCCCGCTTGCTGGGTTATAAGCCA
GGACAGTGGAAACCAGAGCCAGCTGGGACTAAGAGGTGGACCAGAAGAGCCAGCTCTTAC
CCATCCACACATCTTAGACCTCAGTTTCTCGGTAGAGAACTATGTGGCTGTGTTCGAAGC
ACTGTGGGAAATAGGGAATCATTGTTCTGAGTCTCCTGGGGGAGACAAATCTTGGCTGAG
AGAGAGCTGGCGGCCTGAGCACATGCTGACCACTGCTGGAACCATGGCACTGCTGGGACA
GCTGCTTCCACAAGGGTGCCTGCTGATGCTTTGAGGTCTCATTGCCCCACCTCACATCCC
ACTTCCTCTTGCCCCAGGGACAGATGGGGAACCAGGCTGGCTCAGCACAAGGAGATCTTG
CATTAAGCCTGATTCCCCAGTGGGTCCACCTCTCATCTGCCTCTTTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|38565503|gb|AAR24074.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|38565503|gb|AAR24074.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               45-672, gnl|bosTau2|chr22 (8724003-8723387)
               

               
               45-672, gnl|Hg17|chr3 (38157624-38158281)
               

               
               45-672, gnl|Mm7|chr9 (119017717-119017150)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               45-672, gnl|bosTau2|chr22 (8724003-8723387)
               

               
               45-672, gnl|Hg17|chr3 (38157624-38158281)
               

               
               45-672, gnl|Mm7|chr9 (119017717-119017150)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               clu (0.358938)
               

               
               nlu (0.191681)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.358938)
               

               
               nlu (0.191681)

	45-672, gnl\|bosTau2\|chr22 (8724003-8723387)
	45-672, gnl\|Hg17\|chr3 (38157624-38158281)
	45-672, gnl\|Mm7\|chr9 (119017717-119017150)