Non-Coding RNA Search

Ss1.1-Spl1-SPL010017A11.5

Sequence:


               
               GCCGGCTGCCCGGGAGCTACGGCCATGACGGCGCGAGGGACCGCGAGCCGCTTCTTGACC
AGTGTCCTGCACAACGGGCTGGGTCGTTACGTGCAGCAGCTGCAGCGTCTCAGCTTTAGC
CTTAGCCGTGACGCGCCCTCTTCCCGCGGTGCCAGGTGAGCCAGGAAGGGCGCGGGGGTG
CGACTCCCGGCAGATAGCCCGGCCGGCTGCCCGGGAGCTACGGCCATGACGGCGCGAGGG
ACCGCGAGCCGCTTCTTGACCAGTGTCCTGCACAACGGGCTGGGTCGTTACGTGCAGCAG
CTGCAGCGTCTCAGCTTTAGCCTTAGCCGTGACGCGCCCTCTTCCCGCGGTGCCAGGGAG
TTTGTGGAACGGGAGGTGACCGACTTCGCCCGCCGGAACCCGGGGGTCGTAATATACGTG
AATCCGCGGCCGTGCTGTGTGCCCAGAGTAGTGGCCGAGTACCTTAACGGGGCTGTGCGC
GAGGAGAGCATCCATTGCAAGTCGGTCGAGGAGATCGCCGCACTGGTGCAGAAACTGGCG
GACCAGTCGGGATTGGACGTGATCCGCATCCGCAAGCCCTTCCACACGGACAGCCCTAGC
ATCCAGGGCCAGTGGCACCCCTTCACCAACAAACCGACAACGTTGGGCGGCCTGCGCCCT
CGAGAGGTTCAGGATCCTGCTCCAGCCCAGGTGCAAGCACAATGAAGAGTTGCCCCATTA
ACTCCAGTTCCAGTCTTGATTCTCATCTCAGTAGAGGTGGTTCTTCCTCCTCGTTTGGTT
CACAGGAGACACATGGAGCCCACCAAAAGGGAAGCTGAGCCAAAACTTCTGCTTGGGATA
CAGAAGAGTTGCCTGTTTCTTTTTTTGGTGTTCACTGTGCGGGGCAGTGGCTGTGAGCCT
TCTAGTTTTTATCTGGTTGACATCTCTAAAATCTGAGAGTGTTAAAGGATTTTACTGGGT
CCTTATTTCTCAAATCCATAATAGTGATCTGAAATCACATTGAGAGGTTTCAAGGCTGGC
ATCTGAAGAATCTCTTATGTCCTGTTTCTGCATTCGTTGACCTAGAGAGAAGTAGCACCT
TATATTCTGCTGTGTATACACTGGGCAAGGCCTTTTATATGTGTATGAATGTTTTGTGTA
CAGATTAGAAAACTGAAGTTAATAAACTTGCCAAGATCACAAAAAAAATCTACTATAAAC
TATGTGCATATTTAACCTATAACACCATTTTTTATTATTCTAAAACCACAGAGGAGGATG
GTGTAGTATTGAAGGCCAAGATTAATCTAGGCTTGACCCTTGGAAAGAGTGGTTCTCAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGGCTGCCCGGGAGCTACGGCCATGACGGCGCGAGGGACCGCGAGCCGCTTCTTGACC
AGTGTCCTGCACAACGGGCTGGGTCGTTACGTGCAGCAGCTGCAGCGTCTCAGCTTTAGC
CTTAGCCGTGACGCGCCCTCTTCCCGCGGTGCCAGGTGAGCCAGGAAGGGCGCGGGGGTG
CGACTCCCGGCAGATAGCCCGGCCGGCTGCCCGGGAGCTACGGCCATGACGGCGCGAGGG
ACCGCGAGCCGCTTCTTGACCAGTGTCCTGCACAACGGGCTGGGTCGTTACGTGCAGCAG
CTGCAGCGTCTCAGCTTTAGCCTTAGCCGTGACGCGCCCTCTTCCCGCGGTGCCAGGGAG
TTTGTGGAACGGGAGGTGACCGACTTCGCCCGCCGGAACCCGGGGGTCGTAATATACGTG
AATCCGCGGCCGTGCTGTGTGCCCAGAGTAGTGGCCGAGTACCTTAACGGGGCTGTGCGC
GAGGAGAGCATCCATTGCAAGTCGGTCGAGGAGATCGCCGCACTGGTGCAGAAACTGGCG
GACCAGTCGGGATTGGACGTGATCCGCATCCGCAAGCCCTTCCACACGGACAGCCCTAGC
ATCCAGGGCCAGTGGCACCCCTTCACCAACAAACCGACAACGTTGGGCGGCCTGCGCCCT
CGAGAGGTTCAGGATCCTGCTCCAGCCCAGGTGCAAGCACAATGAAGAGTTGCCCCATTA
ACTCCAGTTCCAGTCTTGATTCTCATCTCAGTAGAGGTGGTTCTTCCTCCTCGTTTGGTT
CACAGGAGACACATGGAGCCCACCAAAAGGGAAGCTGAGCCAAAACTTCTGCTTGGGATA
CAGAAGAGTTGCCTGTTTCTTTTTTTGGTGTTCACTGTGCGGGGCAGTGGCTGTGAGCCT
TCTAGTTTTTATCTGGTTGACATCTCTAAAATCTGAGAGTGTTAAAGGATTTTACTGGGT
CCTTATTTCTCAAATCCATAATAGTGATCTGAAATCACATTGAGAGGTTTCAAGGCTGGC
ATCTGAAGAATCTCTTATGTCCTGTTTCTGCATTCGTTGACCTAGAGAGAAGTAGCACCT
TATATTCTGCTGTGTATACACTGGGCAAGGCCTTTTATATGTGTATGAATGTTTTGTGTA
CAGATTAGAAAACTGAAGTTAATAAACTTGCCAAGATCACAAAAAAAATCTACTATAAAC
TATGTGCATATTTAACCTATAACACCATTTTTTATTATTCTAAAACCACAGAGGAGGATG
GTGTAGTATTGAAGGCCAAGATTAATCTAGGCTTGACCCTTGGAAAGAGTGGTTCTCAGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|50401648|sp|Q95KE5|RM43_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50401648|sp|Q95KE5|RM43_BOVIN

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               14-187, gnl|bosTau2|chr26 (13392712-13392538)
               

               
               14-187, gnl|Hg17|chr10 (102737201-102737000)
               

               
               14-187, gnl|Mm7|chr19 (44900277-44900098)
               


               
               198-405, gnl|bosTau2|chr26 (13392730-13392520)
               

               
               198-405, gnl|Hg17|chr10 (102737220-102736981)
               

               
               198-405, gnl|Mm7|chr19 (44900288-44900080)
               


               
               464-1248, gnl|bosTau2|chr26 (13392259-13391506)
               

               
               464-1248, gnl|Hg17|chr10 (102736722-102735952)
               

               
               464-1248, gnl|Mm7|chr19 (44899813-44899175)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-187, gnl|bosTau2|chr26 (13392712-13392538)
               

               
               14-187, gnl|Hg17|chr10 (102737201-102737000)
               

               
               14-187, gnl|Mm7|chr19 (44900277-44900098)
               


               
               198-405, gnl|bosTau2|chr26 (13392730-13392520)
               

               
               198-405, gnl|Hg17|chr10 (102737220-102736981)
               

               
               198-405, gnl|Mm7|chr19 (44900288-44900080)
               


               
               464-1248, gnl|bosTau2|chr26 (13392259-13391506)
               

               
               464-1248, gnl|Hg17|chr10 (102736722-102735952)
               

               
               464-1248, gnl|Mm7|chr19 (44899813-44899175)

Expressed library(ies): 29 entry(ies)

More info

Expressed library(ies): 29 entry(ies)

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               vin (0.665115)
               

               
               elu (0.385356)
               

               
               fty (0.351679)
               

               
               spc (0.340097)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               pgl (0.236967)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               bfe (0.149858)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 29 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.665115)
               

               
               elu (0.385356)
               

               
               fty (0.351679)
               

               
               spc (0.340097)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               pgl (0.236967)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               bfe (0.149858)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	14-187, gnl\|bosTau2\|chr26 (13392712-13392538)
	14-187, gnl\|Hg17\|chr10 (102737201-102737000)
	14-187, gnl\|Mm7\|chr19 (44900277-44900098)

	198-405, gnl\|bosTau2\|chr26 (13392730-13392520)
	198-405, gnl\|Hg17\|chr10 (102737220-102736981)
	198-405, gnl\|Mm7\|chr19 (44900288-44900080)

	464-1248, gnl\|bosTau2\|chr26 (13392259-13391506)
	464-1248, gnl\|Hg17\|chr10 (102736722-102735952)
	464-1248, gnl\|Mm7\|chr19 (44899813-44899175)

	vin (0.665115)
	elu (0.385356)
	fty (0.351679)
	spc (0.340097)
	fce (0.271592)
	pla (0.267344)
	pgl (0.236967)
	jca (0.22792)
	nms (0.213858)
	hea (0.204499)
	jej (0.197844)
	fcc (0.197785)
	nep (0.183925)
	fhi (0.169578)
	nje (0.16592)
	cje (0.165235)
	nco (0.161734)
	cag (0.151194)
	bfe (0.149858)
	ssp (0.13552)
	nmm (0.132802)
	ute (0.132784)
	ova (0.129132)
	sug (0.127291)
	bla (0.124347)
	med (0.116252)
	nbm (0.0993246)
	eje (0.0988338)
	ldo (0.0970026)