Ss1.1-Spl1-SPL010017D01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGAGCCGGTGGGCGGCCGAGGGTCGGAACGCTCGGCGGGTGCTTGCTGGACCTCGGCCG GTGCCCGCGCGGCCGCGTTCCCGTGGCGCTGTCCGCCTTGGCCCGCCATGCGCCCTCCGG TCCCGTCGCTGGGGGTGCTGCTGCTGCTGCTTCTGCCGCCGCCTCCCGGCGAGGCCACCA AGAAGCCGACGCCCTGTAAGCGCTGCCGGGAGCTGGTGGACAAGTTCAACCAGGGTATGG TGGACACGGCAAATAAGAACTTTGGAGGTGGAAACACAGCTTGGGAGGAAAAGACACTGT CCAAGTATGAATTCAGCGAGGTCCGCCTGCTGGAGATCCTGGAGGGCCTGTGCGGGAGCA GCGACTTCGAGTGCAACCAGCTGGTGGAGGAGCACGAGGAGCGCCTGGAGGCCTGGTGGC TGCGGCTGAAGAAGAAGCATCCTGACCTATTTGAATGGTTTTGTGTGAAAACACTGGAAG TCTGTTGTCCTCCGGGAACTTACGGGCCGGACTGCCTGGCGTGCCAGGGCGGGTCGGAGA GGCCCTGCAGCGGGAACGGCCACTGCAGCGGAGACGGCAGCAGGCAGGGGGACGGGTCCT GCCAGTGCCATGCGGGCTACCGGGGGCCGCTGTGCACCGACTGCGTGGACGGCTACTTCA GCTCGCTGAGGAATGCGACACACAGCGTCTGCTCAGCCTGTGACCAGTCCTGTAAGACGT GCACGGGCCCCACCCACAGGGACTGCGAGCAGTGCGAAGTGGGCTGGGTGCAGGAGGACG ACGCCTGCGTGGACGTGGACGAGTGCGCGGCGGAGACGCCCCCCTGCGGCGACGGGCAGT ACTGCGAGAACAGCCGCGGCGCGTTCACCTGCGAAGACTGTGATGCCACCTGTGTGGGCT GCACGGGCAAGGGTCCCGAGGGGTGTAAGGAGTGCGTGCCCGGCTACTCCAAGGACAGCG GCCAGTGCACAGATATTGACGAGTGCTCGCTGGAAGAAAAGCCCTGTTCGCGGCAGAATG AGAACTGCTACAACACGCCCGGCAGCTACGTCTGCGTGTGTCCCGAAGGCTTCGAGGAGA CAGAGGATGCCTGTGTGCAGACACGGCCCGCGGGGGACGAAGCGGCAGAAGAAAATCCCA CAGAGCTGCCCTCCCGCGAAGACCTGTGACGAGCACCCAGGACCGAAGCCACATCTTCCC TCTAAGTTATTCAGACTCAGGTCCCGGACACGCGCCCCTGTGGCTGCAGGGGGCCGTCAG GGGGACGCTGCCTTTTGAAACGGTTGATGCTCATGGGACCCTTAACAAAGCTGCATTTCT TGGTTATTCTTAAACAGATTTGTATATTTTGATACCGTCGTTTATAATAAAATTGGCCAC TGAAGGTAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGAGCCGGTGGGCGGCCGAGGGTCGGAACGCTCGGCGGGTGCTTGCTGGACCTCGGCCG GTGCCCGCGCGGCCGCGTTCCCGTGGCGCTGTCCGCCTTGGCCCGCCATGCGCCCTCCGG TCCCGTCGCTGGGGGTGCTGCTGCTGCTGCTTCTGCCGCCGCCTCCCGGCGAGGCCACCA AGAAGCCGACGCCCTGTAAGCGCTGCCGGGAGCTGGTGGACAAGTTCAACCAGGGTATGG TGGACACGGCAAATAAGAACTTTGGAGGTGGAAACACAGCTTGGGAGGAAAAGACACTGT CCAAGTATGAATTCAGCGAGGTCCGCCTGCTGGAGATCCTGGAGGGCCTGTGCGGGAGCA GCGACTTCGAGTGCAACCAGCTGGTGGAGGAGCACGAGGAGCGCCTGGAGGCCTGGTGGC TGCGGCTGAAGAAGAAGCATCCTGACCTATTTGAATGGTTTTGTGTGAAAACACTGGAAG TCTGTTGTCCTCCGGGAACTTACGGGCCGGACTGCCTGGCGTGCCAGGGCGGGTCGGAGA GGCCCTGCAGCGGGAACGGCCACTGCAGCGGAGACGGCAGCAGGCAGGGGGACGGGTCCT GCCAGTGCCATGCGGGCTACCGGGGGCCGCTGTGCACCGACTGCGTGGACGGCTACTTCA GCTCGCTGAGGAATGCGACACACAGCGTCTGCTCAGCCTGTGACCAGTCCTGTAAGACGT GCACGGGCCCCACCCACAGGGACTGCGAGCAGTGCGAAGTGGGCTGGGTGCAGGAGGACG ACGCCTGCGTGGACGTGGACGAGTGCGCGGCGGAGACGCCCCCCTGCGGCGACGGGCAGT ACTGCGAGAACAGCCGCGGCGCGTTCACCTGCGAAGACTGTGATGCCACCTGTGTGGGCT GCACGGGCAAGGGTCCCGAGGGGTGTAAGGAGTGCGTGCCCGGCTACTCCAAGGACAGCG GCCAGTGCACAGATATTGACGAGTGCTCGCTGGAAGAAAAGCCCTGTTCGCGGCAGAATG AGAACTGCTACAACACGCCCGGCAGCTACGTCTGCGTGTGTCCCGAAGGCTTCGAGGAGA CAGAGGATGCCTGTGTGCAGACACGGCCCGCGGGGGACGAAGCGGCAGAAGAAAATCCCA CAGAGCTGCCCTCCCGCGAAGACCTGTGACGAGCACCCAGGACCGAAGCCACATCTTCCC TCTAAGTTATTCAGACTCAGGTCCCGGACACGCGCCCCTGTGGCTGCAGGGGGCCGTCAG GGGGACGCTGCCTTTTGAAACGGTTGATGCTCATGGGACCCTTAACAAAGCTGCATTTCT TGGTTATTCTTAAACAGATTTGTATATTTTGATACCGTCGTTTATAATAAAATTGGCCAC TGAAGGTAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 3-234, gnl|bosTau2|chr5 (76286739-76286514) | |
| 3-234, gnl|Hg17|chr22 (48633195-48633408) | |
| 3-234, gnl|Mm7|chr15 (88901979-88902170) | |
| 312-428, gnl|bosTau2|chr5 (76285228-76285112) | |
| 312-428, gnl|canFam2|chr10 (20279236-20279132) | |
| 312-428, gnl|danRer3|chr20 (56574558-56574459) | |
| 312-428, gnl|fr1|chrUn (52077585-52077689) | |
| 312-428, gnl|hg17|chr22 (48634230-48634334) | |
| 312-428, gnl|Hg17|chr22 (48634234-48634350) | |
| 312-428, gnl|loxAfr1|scaffold_64300 (4201-4103) | |
| 312-428, gnl|mm7|chr15 (88902855-88902959) | |
| 312-428, gnl|Mm7|chr15 (88902859-88902975) | |
| 312-428, gnl|monDom2|scaffold_99 (4456254-4456361) | |
| 312-428, gnl|oryCun1|scaffold_190722 (4080-4184) | |
| 312-428, gnl|panTro1|chr23 (49055467-49055571) | |
| 312-428, gnl|rheMac2|chr10 (93885001-93885105) | |
| 312-428, gnl|rn3|chr7 (127158947-127159051) | |
| 312-428, gnl|tetNig1|chr19 (5124462-5124362) | |
| 312-428, gnl|xenTro1|scaffold_24 (3151512-3151616) | |
| 519-696, gnl|bosTau2|chr5 (76284297-76284120) | |
| 519-696, gnl|Hg17|chr22 (48636093-48636270) | |
| 519-696, gnl|Mm7|chr15 (88904293-88904470) | |
| 971-1116, gnl|bosTau2|chr5 (76280972-76280827) | |
| 971-1116, gnl|canFam2|chr10 (20274641-20274465) | |
| 971-1116, gnl|fr1|chrUn (52078990-52079125) | |
| 971-1116, gnl|hg17|chr22 (48639910-48640082) | |
| 971-1116, gnl|Hg17|chr22 (48639924-48640063) | |
| 971-1116, gnl|mm7|chr15 (88907469-88907643) | |
| 971-1116, gnl|Mm7|chr15 (88907483-88907622) | |
| 971-1116, gnl|panTro1|chr23 (49062138-49062305) | |
| 971-1116, gnl|rn3|chr7 (127163441-127163615) | |
| 971-1116, gnl|tetNig1|chr19 (5123263-5123106) | |
| 1119-1389, gnl|bosTau2|chr5 (76280115-76279861) | |
| 1119-1389, gnl|canFam2|chr10 (20273242-20272958) | |
| 1119-1389, gnl|hg17|chr22 (48641657-48641980) | |
| 1119-1389, gnl|Hg17|chr22 (48641763-48642037) | |
| 1119-1389, gnl|mm7|chr15 (88908590-88908954) | |
| 1119-1389, gnl|Mm7|chr15 (88908721-88909011) | |
| 1119-1389, gnl|rn3|chr7 (127164510-127164895) | |
| 1119-1389, gnl|xenTro1|scaffold_1095 (112902-113335) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-234, gnl|bosTau2|chr5 (76286739-76286514) | |
| 3-234, gnl|Hg17|chr22 (48633195-48633408) | |
| 3-234, gnl|Mm7|chr15 (88901979-88902170) | |
| 312-428, gnl|bosTau2|chr5 (76285228-76285112) | |
| 312-428, gnl|canFam2|chr10 (20279236-20279132) | |
| 312-428, gnl|danRer3|chr20 (56574558-56574459) | |
| 312-428, gnl|fr1|chrUn (52077585-52077689) | |
| 312-428, gnl|hg17|chr22 (48634230-48634334) | |
| 312-428, gnl|Hg17|chr22 (48634234-48634350) | |
| 312-428, gnl|loxAfr1|scaffold_64300 (4201-4103) | |
| 312-428, gnl|mm7|chr15 (88902855-88902959) | |
| 312-428, gnl|Mm7|chr15 (88902859-88902975) | |
| 312-428, gnl|monDom2|scaffold_99 (4456254-4456361) | |
| 312-428, gnl|oryCun1|scaffold_190722 (4080-4184) | |
| 312-428, gnl|panTro1|chr23 (49055467-49055571) | |
| 312-428, gnl|rheMac2|chr10 (93885001-93885105) | |
| 312-428, gnl|rn3|chr7 (127158947-127159051) | |
| 312-428, gnl|tetNig1|chr19 (5124462-5124362) | |
| 312-428, gnl|xenTro1|scaffold_24 (3151512-3151616) | |
| 519-696, gnl|bosTau2|chr5 (76284297-76284120) | |
| 519-696, gnl|Hg17|chr22 (48636093-48636270) | |
| 519-696, gnl|Mm7|chr15 (88904293-88904470) | |
| 971-1116, gnl|bosTau2|chr5 (76280972-76280827) | |
| 971-1116, gnl|canFam2|chr10 (20274641-20274465) | |
| 971-1116, gnl|fr1|chrUn (52078990-52079125) | |
| 971-1116, gnl|hg17|chr22 (48639910-48640082) | |
| 971-1116, gnl|Hg17|chr22 (48639924-48640063) | |
| 971-1116, gnl|mm7|chr15 (88907469-88907643) | |
| 971-1116, gnl|Mm7|chr15 (88907483-88907622) | |
| 971-1116, gnl|panTro1|chr23 (49062138-49062305) | |
| 971-1116, gnl|rn3|chr7 (127163441-127163615) | |
| 971-1116, gnl|tetNig1|chr19 (5123263-5123106) | |
| 1119-1389, gnl|bosTau2|chr5 (76280115-76279861) | |
| 1119-1389, gnl|canFam2|chr10 (20273242-20272958) | |
| 1119-1389, gnl|hg17|chr22 (48641657-48641980) | |
| 1119-1389, gnl|Hg17|chr22 (48641763-48642037) | |
| 1119-1389, gnl|mm7|chr15 (88908590-88908954) | |
| 1119-1389, gnl|Mm7|chr15 (88908721-88909011) | |
| 1119-1389, gnl|rn3|chr7 (127164510-127164895) | |
| 1119-1389, gnl|xenTro1|scaffold_1095 (112902-113335) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| cje (0.330469) | |
| pty (0.285429) | |
| tes (0.207814) | |
| nlu (0.191681) | |
| nco (0.161734) | |
| cag (0.151194) | |
| pla (0.133672) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.330469) | |
| pty (0.285429) | |
| tes (0.207814) | |
| nlu (0.191681) | |
| nco (0.161734) | |
| cag (0.151194) | |
| pla (0.133672) |