Ss1.1-Spl1-SPL010018B02.5
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ACTCCAGGAGCAGGTCAGCCCACATAAAGCCAGGGCTCCTCTCCGGGGTACAGCGCTCAA
CATGCCCACCCAAAGGCAGGCCCCTCAGCTACTGCTGCTGCCGCTGCTGCTGCTCACCTT
ACCAGCCACAGGCTCAGACCCTGTACTCTGCTTCACCCAGTATGAGGAATCTTCGGGCAA
GTGCAAGGGCCTCCTTGGGGGGGGTGTCAGCTTGGAAGATTGCTGTCTCAATGCTGACTA
CGCCTTCCAGGAGACCAGCAGCAAGTTCTGTATGCCGTGCAGGCCCCCACAATGGTCACC
ATGGTCCGCATGGGCCCCCTGCTCAGTGACCTGCACCGAAGGCTCCCAGCTGCGGCACCG
GCGCTGTGTGGGCTGGGGCGGGCAGTGCCCTGAGAATGTGGAGCTGGGGACCCTCCAGTG
GCAGCTGCAGGCCTGTGAGAACCAGCCATGCTGTCCTGAGATGGGCGGCTGGTCCAGTTG
GGGGCCCTGGGCACCTTGCTCTGCCACCTGCTCCAGAGGGACCCGGACTCGTCGTCGGGC
ATGTGATCGCCCCACCCCCAAGTGTGGGGGCCACTGCCCAGGAGAGGCACAGGAATCAGA
GGACTGTGACACCCAACAGGTCTGCCCCACACACGGGGCCTGGGCTGCTTGGGGTCCCTG
GGGCCCCTGCCAAAGCACCTGCAAAGGTGGACCCAGCGAACCTGTGGAGAGACGAAAACG
CACGTGCACAGCACCTGAGCCTTCCACGAAGCCTCCCGGGAATCCCTGCTCAGGGTCAGC
CTATGACCAGCGGATGTGCAGCGGCTTGCCACCCTGCCCAGTGGCTGGGGGCTGGGGGCC
ATGGGGTGCTGTGAGTCCCTGCCCTGTGACCTGCGGCCTGGGCCAGACCCGAGAACAACG
GTCGTGTGATCACCCTGTGCCCCAGCACGGGGGCCCCTTCTGTGTCGGCGAAGCCTTTCG
GACCCACATCTGCAACACGGCTGTGCCCTGCCCTGTGGATGGAGAGTGGGGGCTCTGGGG
AGAGTGGAGCAACTGCGTCCGCCGGGGCATAAAGCACATCAGCTGCCAGGAGATCCCAGG
CCAGCAGACCCGCTCGAGGATCTGCAAAGGCCGCAAGTTTGACGGACGGCGATGTGTTGG
GGAACCACAGGACATCCGGCACTGCTACAGCATCCAGCGCTGCCCCCTCAAGGAAGCCTC
CTGGTCCGAGTGGAGTACCTGGGGGCTGTGCATACCTCCTTGTGGCCCCAGCCCTGTCCG
CACCCGCCAGCGCCTCTGCCAGCCCAAGCTCCCCAATTTCCCGCCCACCATTACCCCGGT
CGAAGGTCAGGGTGAGAAGAATGTGACCTTCTGGGGGAAACCTTTGGTAAAGTGCGATGT
GCTGCAGGGGCAGCACATGATGGTGGAGGAGAAACGGCCATGTCTACACGCACCTCCCTG
CAATGAACCCTGAGGATGAGAAGCTCTAACACCTCTCTCTTCCACTCTGACTCCCTGACC
TCTCAGACTTAAATAAACCAGCCTCTTCCCCAAGAAAAAAAAAAAAAA
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Blue-coloured subsequences are predicted RNA structures by RNAz
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ACTCCAGGAGCAGGTCAGCCCACATAAAGCCAGGGCTCCTCTCCGGGGTACAGCGCTCAA
CATGCCCACCCAAAGGCAGGCCCCTCAGCTACTGCTGCTGCCGCTGCTGCTGCTCACCTT
ACCAGCCACAGGCTCAGACCCTGTACTCTGCTTCACCCAGTATGAGGAATCTTCGGGCAA
GTGCAAGGGCCTCCTTGGGGGGGGTGTCAGCTTGGAAGATTGCTGTCTCAATGCTGACTA
CGCCTTCCAGGAGACCAGCAGCAAGTTCTGTATGCCGTGCAGGCCCCCACAATGGTCACC
ATGGTCCGCATGGGCCCCCTGCTCAGTGACCTGCACCGAAGGCTCCCAGCTGCGGCACCG
GCGCTGTGTGGGCTGGGGCGGGCAGTGCCCTGAGAATGTGGAGCTGGGGACCCTCCAGTG
GCAGCTGCAGGCCTGTGAGAACCAGCCATGCTGTCCTGAGATGGGCGGCTGGTCCAGTTG
GGGGCCCTGGGCACCTTGCTCTGCCACCTGCTCCAGAGGGACCCGGACTCGTCGTCGGGC
ATGTGATCGCCCCACCCCCAAGTGTGGGGGCCACTGCCCAGGAGAGGCACAGGAATCAGA
GGACTGTGACACCCAACAGGTCTGCCCCACACACGGGGCCTGGGCTGCTTGGGGTCCCTG
GGGCCCCTGCCAAAGCACCTGCAAAGGTGGACCCAGCGAACCTGTGGAGAGACGAAAACG
CACGTGCACAGCACCTGAGCCTTCCACGAAGCCTCCCGGGAATCCCTGCTCAGGGTCAGC
CTATGACCAGCGGATGTGCAGCGGCTTGCCACCCTGCCCAGTGGCTGGGGGCTGGGGGCC
ATGGGGTGCTGTGAGTCCCTGCCCTGTGACCTGCGGCCTGGGCCAGACCCGAGAACAACG
GTCGTGTGATCACCCTGTGCCCCAGCACGGGGGCCCCTTCTGTGTCGGCGAAGCCTTTCG
GACCCACATCTGCAACACGGCTGTGCCCTGCCCTGTGGATGGAGAGTGGGGGCTCTGGGG
AGAGTGGAGCAACTGCGTCCGCCGGGGCATAAAGCACATCAGCTGCCAGGAGATCCCAGG
CCAGCAGACCCGCTCGAGGATCTGCAAAGGCCGCAAGTTTGACGGACGGCGATGTGTTGG
GGAACCACAGGACATCCGGCACTGCTACAGCATCCAGCGCTGCCCCCTCAAGGAAGCCTC
CTGGTCCGAGTGGAGTACCTGGGGGCTGTGCATACCTCCTTGTGGCCCCAGCCCTGTCCG
CACCCGCCAGCGCCTCTGCCAGCCCAAGCTCCCCAATTTCCCGCCCACCATTACCCCGGT
CGAAGGTCAGGGTGAGAAGAATGTGACCTTCTGGGGGAAACCTTTGGTAAAGTGCGATGT
GCTGCAGGGGCAGCACATGATGGTGGAGGAGAAACGGCCATGTCTACACGCACCTCCCTG
CAATGAACCCTGAGGATGAGAAGCTCTAACACCTCTCTCTTCCACTCTGACTCCCTGACC
TCTCAGACTTAAATAAACCAGCCTCTTCCCCAAGAAAAAAAAAAAAAA
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gi|61839325|ref|XP_588320.1| |
Protein identifier
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gi|61839325|ref|XP_588320.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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111-283, gnl|bosTau2|chrX (25643761-25643589) |
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111-283, gnl|Hg17|chrX (47245361-47245176) |
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111-283, gnl|Mm7|chrX (19364474-19364301) |
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458-629, gnl|bosTau2|chrX (25641744-25641573) |
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458-629, gnl|Hg17|chrX (47243295-47243124) |
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458-629, gnl|Mm7|chrX (19361964-19361793) |
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630-830, gnl|bosTau2|chrX (25641435-25641235) |
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630-830, gnl|Hg17|chrX (47242985-47242785) |
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630-830, gnl|Mm7|chrX (19361669-19361469) |
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995-1183, gnl|bosTau2|chrX (25640640-25640452) |
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995-1183, gnl|canFam2|chrX (41195000-41195226) |
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995-1183, gnl|echTel1|scaffold_144833 (8-233) |
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995-1183, gnl|hg17|chrX (47241959-47242186) |
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995-1183, gnl|Hg17|chrX (47242173-47241985) |
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995-1183, gnl|mm7|chrX (19360663-19360887) |
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995-1183, gnl|Mm7|chrX (19360874-19360689) |
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995-1183, gnl|monDom2|scaffold_134 (575423-575213) |
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995-1183, gnl|oryCun1|scaffold_122742 (204-428) |
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995-1183, gnl|panTro1|chrX (48825550-48825777) |
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995-1183, gnl|rheMac2|chrX (45451444-45451671) |
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995-1183, gnl|rn3|chrX (12592230-12592457) |
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1303-1535, gnl|bosTau2|chrX (25638816-25638586) |
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1303-1535, gnl|Hg17|chrX (47240093-47239813) |
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1303-1535, gnl|Mm7|chrX (19358909-19358629) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
111-283, gnl|bosTau2|chrX (25643761-25643589) |
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111-283, gnl|Hg17|chrX (47245361-47245176) |
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111-283, gnl|Mm7|chrX (19364474-19364301) |
| |
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458-629, gnl|bosTau2|chrX (25641744-25641573) |
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458-629, gnl|Hg17|chrX (47243295-47243124) |
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458-629, gnl|Mm7|chrX (19361964-19361793) |
| |
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630-830, gnl|bosTau2|chrX (25641435-25641235) |
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630-830, gnl|Hg17|chrX (47242985-47242785) |
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630-830, gnl|Mm7|chrX (19361669-19361469) |
| |
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995-1183, gnl|bosTau2|chrX (25640640-25640452) |
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995-1183, gnl|canFam2|chrX (41195000-41195226) |
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995-1183, gnl|echTel1|scaffold_144833 (8-233) |
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995-1183, gnl|hg17|chrX (47241959-47242186) |
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995-1183, gnl|Hg17|chrX (47242173-47241985) |
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995-1183, gnl|mm7|chrX (19360663-19360887) |
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995-1183, gnl|Mm7|chrX (19360874-19360689) |
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995-1183, gnl|monDom2|scaffold_134 (575423-575213) |
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995-1183, gnl|oryCun1|scaffold_122742 (204-428) |
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995-1183, gnl|panTro1|chrX (48825550-48825777) |
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995-1183, gnl|rheMac2|chrX (45451444-45451671) |
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995-1183, gnl|rn3|chrX (12592230-12592457) |
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1303-1535, gnl|bosTau2|chrX (25638816-25638586) |
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1303-1535, gnl|Hg17|chrX (47240093-47239813) |
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1303-1535, gnl|Mm7|chrX (19358909-19358629) |
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csp (0.644745) |
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cly (0.603209) |
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eje (0.296501) |
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clu (0.239292) |
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sin (0.174948) |
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duo (0.172801) |
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cje (0.165235) |
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cag (0.151194) |
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nca (0.136874) |
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cov (0.132153) |
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cbl (0.114797) |
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nbm (0.0993246) |
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csp (0.644745) |
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cly (0.603209) |
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eje (0.296501) |
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clu (0.239292) |
|
sin (0.174948) |
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duo (0.172801) |
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cje (0.165235) |
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cag (0.151194) |
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nca (0.136874) |
|
cov (0.132153) |
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cbl (0.114797) |
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nbm (0.0993246) |
