Non-Coding RNA Search

Ss1.1-Spl1-SPL010018E03.5.45

Sequence:


               
               ACACAGAATCTCCGCAGATTCCAAAGATGCGGGTCAGGGGCCCTCAAGCCATCCTCATTC
TGCTGTCGGGGGCCCTGGCCCTGACCGGGACTCAGGCGGGTCCCCACTCCCTGAGCTATT
TCTACACCGCCGTGTCCCGGCCCGACCGCGGGGACTCCCGCTTCTTCATTGTCGGCTACG
TGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCCCAAATGCAAAGATGGAGCCGC
GGGCGCAGTGGATACAGCAGGAGGGGCAGGAGTATTGGGATCGGGAGACACAGATCAGCA
AGGACAACGCACAGATTAACCGAGTGAACCTGAACACCCTGCGCGGCTACTACAACCAGA
GCGAGGCCGGGTCTCACACCCTCCAGAGAATGTACGGCTGCTACTTGGGACCAGACGGGC
TCCTCCTCCGCGGGTACGATCAGGACGCCTACGACGGCGCCGATTACATCGCCCTGAACG
AGGACCTGCGCTCCTGGACCGCGGCGGACATGGCGGCTCAGATCTCCAAGCGCAAGAGGG
AGGCGGCCGATGAGGCGGAGCGGATGAGGAGCTACCTGCAGGGCCGGTGTGTGGAGTGGC
TCCAGAAATACCTGGAGATGGGGAAGGACACGCTGCAGCGCGCAGAGCCTCCAAAGACAC
ATGTGACCCGCCACCCCAGCTCTGACCTCGGGGTCACCTTGAGGTGCTGGGCCCTGGGCT
TCTACCCTAAGGAGATCTCCCTGAGCTGGCAGCGCGAGGGCCAGGACCAGAGCCAGGACA
TGGAGCTGGTGGAGACCAGGCCCTCAGGGGATGGGACCTTCCAGAAGTGGGCGGCCCTGG
TGGTGCCTCCTGGAGAGGAGCAGAGCTACACCTGCCATGTGCAGCACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACAGAATCTCCGCAGATTCCAAAGATGCGGGTCAGGGGCCCTCAAGCCATCCTCATTC
TGCTGTCGGGGGCCCTGGCCCTGACCGGGACTCAGGCGGGTCCCCACTCCCTGAGCTATT
TCTACACCGCCGTGTCCCGGCCCGACCGCGGGGACTCCCGCTTCTTCATTGTCGGCTACG
TGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCCCAAATGCAAAGATGGAGCCGC
GGGCGCAGTGGATACAGCAGGAGGGGCAGGAGTATTGGGATCGGGAGACACAGATCAGCA
AGGACAACGCACAGATTAACCGAGTGAACCTGAACACCCTGCGCGGCTACTACAACCAGA
GCGAGGCCGGGTCTCACACCCTCCAGAGAATGTACGGCTGCTACTTGGGACCAGACGGGC
TCCTCCTCCGCGGGTACGATCAGGACGCCTACGACGGCGCCGATTACATCGCCCTGAACG
AGGACCTGCGCTCCTGGACCGCGGCGGACATGGCGGCTCAGATCTCCAAGCGCAAGAGGG
AGGCGGCCGATGAGGCGGAGCGGATGAGGAGCTACCTGCAGGGCCGGTGTGTGGAGTGGC
TCCAGAAATACCTGGAGATGGGGAAGGACACGCTGCAGCGCGCAGAGCCTCCAAAGACAC
ATGTGACCCGCCACCCCAGCTCTGACCTCGGGGTCACCTTGAGGTGCTGGGCCCTGGGCT
TCTACCCTAAGGAGATCTCCCTGAGCTGGCAGCGCGAGGGCCAGGACCAGAGCCAGGACA
TGGAGCTGGTGGAGACCAGGCCCTCAGGGGATGGGACCTTCCAGAAGTGGGCGGCCCTGG
TGGTGCCTCCTGGAGAGGAGCAGAGCTACACCTGCCATGTGCAGCACG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q68VF2_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q68VF2_PIG

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               103-370, gnl|bosTau2|chr23 (21180741-21180474)
               

               
               103-370, gnl|Hg17|chr6 (30335574-30335841)
               

               
               103-370, gnl|Mm7|chr17 (33571220-33571487)
               


               
               403-653, gnl|bosTau2|chr20 (36655627-36655873)
               

               
               403-653, gnl|Hg17|chr6 (31347071-31346829)
               

               
               403-653, gnl|Mm7|chr17 (32077846-32077606)
               


               
               695-887, gnl|bosTau2|chr7 (27038140-27037948)
               

               
               695-887, gnl|Hg17|chr6 (31346192-31346000)
               

               
               695-887, gnl|Mm7|chr13 (23071892-23071697)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               103-370, gnl|bosTau2|chr23 (21180741-21180474)
               

               
               103-370, gnl|Hg17|chr6 (30335574-30335841)
               

               
               103-370, gnl|Mm7|chr17 (33571220-33571487)
               


               
               403-653, gnl|bosTau2|chr20 (36655627-36655873)
               

               
               403-653, gnl|Hg17|chr6 (31347071-31346829)
               

               
               403-653, gnl|Mm7|chr17 (32077846-32077606)
               


               
               695-887, gnl|bosTau2|chr7 (27038140-27037948)
               

               
               695-887, gnl|Hg17|chr6 (31346192-31346000)
               

               
               695-887, gnl|Mm7|chr13 (23071892-23071697)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nje (0.16592)
               

               
               cst (0.140036)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               cst (0.140036)
               

               
               cty (0.10408)

	103-370, gnl\|bosTau2\|chr23 (21180741-21180474)
	103-370, gnl\|Hg17\|chr6 (30335574-30335841)
	103-370, gnl\|Mm7\|chr17 (33571220-33571487)

	403-653, gnl\|bosTau2\|chr20 (36655627-36655873)
	403-653, gnl\|Hg17\|chr6 (31347071-31346829)
	403-653, gnl\|Mm7\|chr17 (32077846-32077606)

	695-887, gnl\|bosTau2\|chr7 (27038140-27037948)
	695-887, gnl\|Hg17\|chr6 (31346192-31346000)
	695-887, gnl\|Mm7\|chr13 (23071892-23071697)