Non-Coding RNA Search

Ss1.1-Spl1-SPL010018F08.5

Sequence:


               
               TTTTTTTTTTTTTTTTTGAGTGACTGAAACACCAAAATTAAGGTGGTGCAGGTCATCTGC
TTTTTAAACACATCAAGCCTTCTCTCACTGGGGTTCACAAATGTTTGTTGTCCCTTCTAA
AGTGAAATGAGACATACACACAAAAAAAAGGATGAGGAGTGCACAGGGTGGGTTTACAGG
GAGACAGCCTGGAGGACCAGGGGGTGAGTCTCCGAGCCTCGTTCCCTGACTGGTGCTGGG
CAGCGCCCCTTGCGCACAGCTGAGCCTGCCAGGCGTCTGGGACAGACCTGTGCAGTTCCG
CGTACCCCTGTATATGCAGACGGGTTCTTGTACACATTTAGGTAAAGTTCAAACTCTCTG
CTGTTGGATTTTTGGTTCTGTTCCCCAAAATAAAAGGCAATCAGAGTTCAGACCTCATTT
GGAAACACTTTCAGCCTCTGGGAATTCCTGTCCAAAACCACTGCCTGGACTTCTGGGGCC
ACTACTCTCGGTGTAACATCCTCAGTAGGGCCGGCCCCAACCCACAAGTTGTTGGGTTGC
CAGTCCCGGGCCTCCTTCCCCACCCTGATCCCCAAGACAATGTGCTGCTCTGGCCCAGGA
CCTGGGGCAGCGTGGCAGGGCTGGATGCTGGAGCTGGGGCATCAGTGTCGGAGAGTGTGC
ACAAAGGACAGCAGGAGGCGGGGCTGCAGCCGCTGGCTGGGATGGGAGGCAGCTGCCTCA
GCAGAGGAGCAGGTCAGCAGAAGATCTCTTCCCCCTCTGCGGATACTTCCGAGGCAGGGC
CATCACCGGGCTGCGAGCGGCTTCCTTTGCTCTTCTTCTTTTTTTCCTTCTTCTCCTTTG
GCTTGGCTAACCCAAACAGGCGGGTGGAGGTGGATGTGGAGGTGCAGACTGGCGTCTGGC
TCTGACCCTCTGGTATTCTGCTTGTCTGGCTTGTGGAACCCAGTATGTGAAAAGTCCCCT
TTTCTTTGTGTGTCCGAGAGAGGCTGTTCCTTTTGGGGGACACTGAGAGTTCTGAGTCCA
ATGACCCTGATTTGGCTATTGAAGGTACAGATGGCAAGGGGGCCTCCTCAGGACTGGGTG
AGAAGGATGGGATTCTCATCATCTTGGTGTGTTGATGGAAAACCTGGCAGGCGTCGCGGT
CGCGCTTCAGCTGCTCCTGCTCGCGCTCGAGCTGCCTCTGGGCGGCGCGCAGGCGCTCCA
GATCGCTCTGGTAGGTGCCCTTCCTCTGCTGCAGCTCCTCCCGCTCGCGCTCCAGGTCTT
GGCGGCCTCGCCGCAGCTCGTCCTCGCGCTGCGCCAGCCGCACCTCGCGCTCCTGCAGCG
CCCTGTCGCGGGCCTCCCACTCGCGCTCCCGCCGCCGCTTCTCCTCCAGGTGCTGCGCCT
GCTGCCTCTGCAGGTTGGCCAGGTCCTGGCGCTGCTTCTCCAGGCTGCGCTGCTTCTCCT
GCTCGATGAGGGAGCTGGGCCGGGATGCCGTCCGTGTGAGCGTCCGCTCAGTCAGCAGCA
GCTTCTGGTCCTCGATGTAGCTGTCTTGTTGCAGCACCACACCCTGCAAAGTGCTGAGGA
GCTCGTGGAGATGGATGACGCTCTGGACGACCTGCTCACTGTTTCTTTTAAGCATAAATA
CCACGTTAGCATTTCCACCCTTTTTCAAACCACTGTCCGATTCTGTTCTCCTAAGATCTT
GGCCATCATCTCCCTCTTCCTTTTCACCACCTTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTGAGTGACTGAAACACCAAAATTAAGGTGGTGCAGGTCATCTGC
TTTTTAAACACATCAAGCCTTCTCTCACTGGGGTTCACAAATGTTTGTTGTCCCTTCTAA
AGTGAAATGAGACATACACACAAAAAAAAGGATGAGGAGTGCACAGGGTGGGTTTACAGG
GAGACAGCCTGGAGGACCAGGGGGTGAGTCTCCGAGCCTCGTTCCCTGACTGGTGCTGGG
CAGCGCCCCTTGCGCACAGCTGAGCCTGCCAGGCGTCTGGGACAGACCTGTGCAGTTCCG
CGTACCCCTGTATATGCAGACGGGTTCTTGTACACATTTAGGTAAAGTTCAAACTCTCTG
CTGTTGGATTTTTGGTTCTGTTCCCCAAAATAAAAGGCAATCAGAGTTCAGACCTCATTT
GGAAACACTTTCAGCCTCTGGGAATTCCTGTCCAAAACCACTGCCTGGACTTCTGGGGCC
ACTACTCTCGGTGTAACATCCTCAGTAGGGCCGGCCCCAACCCACAAGTTGTTGGGTTGC
CAGTCCCGGGCCTCCTTCCCCACCCTGATCCCCAAGACAATGTGCTGCTCTGGCCCAGGA
CCTGGGGCAGCGTGGCAGGGCTGGATGCTGGAGCTGGGGCATCAGTGTCGGAGAGTGTGC
ACAAAGGACAGCAGGAGGCGGGGCTGCAGCCGCTGGCTGGGATGGGAGGCAGCTGCCTCA
GCAGAGGAGCAGGTCAGCAGAAGATCTCTTCCCCCTCTGCGGATACTTCCGAGGCAGGGC
CATCACCGGGCTGCGAGCGGCTTCCTTTGCTCTTCTTCTTTTTTTCCTTCTTCTCCTTTG
GCTTGGCTAACCCAAACAGGCGGGTGGAGGTGGATGTGGAGGTGCAGACTGGCGTCTGGC
TCTGACCCTCTGGTATTCTGCTTGTCTGGCTTGTGGAACCCAGTATGTGAAAAGTCCCCT
TTTCTTTGTGTGTCCGAGAGAGGCTGTTCCTTTTGGGGGACACTGAGAGTTCTGAGTCCA
ATGACCCTGATTTGGCTATTGAAGGTACAGATGGCAAGGGGGCCTCCTCAGGACTGGGTG
AGAAGGATGGGATTCTCATCATCTTGGTGTGTTGATGGAAAACCTGGCAGGCGTCGCGGT
CGCGCTTCAGCTGCTCCTGCTCGCGCTCGAGCTGCCTCTGGGCGGCGCGCAGGCGCTCCA
GATCGCTCTGGTAGGTGCCCTTCCTCTGCTGCAGCTCCTCCCGCTCGCGCTCCAGGTCTT
GGCGGCCTCGCCGCAGCTCGTCCTCGCGCTGCGCCAGCCGCACCTCGCGCTCCTGCAGCG
CCCTGTCGCGGGCCTCCCACTCGCGCTCCCGCCGCCGCTTCTCCTCCAGGTGCTGCGCCT
GCTGCCTCTGCAGGTTGGCCAGGTCCTGGCGCTGCTTCTCCAGGCTGCGCTGCTTCTCCT
GCTCGATGAGGGAGCTGGGCCGGGATGCCGTCCGTGTGAGCGTCCGCTCAGTCAGCAGCA
GCTTCTGGTCCTCGATGTAGCTGTCTTGTTGCAGCACCACACCCTGCAAAGTGCTGAGGA
GCTCGTGGAGATGGATGACGCTCTGGACGACCTGCTCACTGTTTCTTTTAAGCATAAATA
CCACGTTAGCATTTCCACCCTTTTTCAAACCACTGTCCGATTCTGTTCTCCTAAGATCTT
GGCCATCATCTCCCTCTTCCTTTTCACCACCTTTTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55642581|ref|XP_510570.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55642581|ref|XP_510570.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-668, gnl|bosTau2|chr21 (9838075-9837418)
               

               
               1-668, gnl|Hg17|chr15 (84089669-84088974)
               

               
               1-668, gnl|Mm7|chr7 (71603332-71602658)
               


               
               1122-1547, gnl|bosTau2|chr21 (9834385-9833957)
               

               
               1122-1547, gnl|Hg17|chr15 (84085703-84085279)
               

               
               1122-1547, gnl|Mm7|chr7 (71599995-71599568)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-668, gnl|bosTau2|chr21 (9838075-9837418)
               

               
               1-668, gnl|Hg17|chr15 (84089669-84088974)
               

               
               1-668, gnl|Mm7|chr7 (71603332-71602658)
               


               
               1122-1547, gnl|bosTau2|chr21 (9834385-9833957)
               

               
               1122-1547, gnl|Hg17|chr15 (84085703-84085279)
               

               
               1122-1547, gnl|Mm7|chr7 (71599995-71599568)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               pla (0.401016)
               

               
               sme (0.305437)
               

               
               jca (0.22792)
               

               
               rec (0.17307)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               cbl (0.114797)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.401016)
               

               
               sme (0.305437)
               

               
               jca (0.22792)
               

               
               rec (0.17307)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               cbl (0.114797)

	1-668, gnl\|bosTau2\|chr21 (9838075-9837418)
	1-668, gnl\|Hg17\|chr15 (84089669-84088974)
	1-668, gnl\|Mm7\|chr7 (71603332-71602658)

	1122-1547, gnl\|bosTau2\|chr21 (9834385-9833957)
	1122-1547, gnl\|Hg17\|chr15 (84085703-84085279)
	1122-1547, gnl\|Mm7\|chr7 (71599995-71599568)

	pla (0.401016)
	sme (0.305437)
	jca (0.22792)
	rec (0.17307)
	eep (0.122564)
	cly (0.120642)
	cbl (0.114797)